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With the increasing demand for giant clams in the ornamental trade as well as habitat destruction of coral reefs, giant clam populations have been threatened across the Indo‐Pacific. This study documents the population status and genetic diversity of giant clams in Perhentian Islands Marine Park (PMP), a Marine Protected Area (MPA) on the east coast of Peninsular Malaysia, plus Rhu Island, an adjacent island outside the MPA.Of the 13 reef sites surveyed across an area of 11,200 m2, two giant clam species were recorded: Tridacna squamosa and Tridacna maxima, with average densities of 1.5 ± 2.2 and 5.2 ± 6.0 ind. 100 m−2, respectively. The size‐class survey revealed a higher number of T. maxima recruits (88 recruits) as compared to T. squamosa (only three recruits), suggesting a disparity in recruitment in the area.The genetic diversity of T. squamosa (n = 83) and T. maxima (n = 104) was explored using the mitochondrial cytochrome c oxidase I (COI) and 16S rRNA gene markers. Interestingly, a higher genetic diversity was detected in COI than 16S for both species. No significant genetic differentiation was detected between the populations of PMP and Rhu Island, while a low but significant genetic structure was detected in both species across the sites of PMP (COI datasets, AMOVA, T. squamosa, FCT = 0.14, P < 0.05; T. maxima, FCT = 0.11, P < 0.05).In general, the results of this study revealed healthy giant clam populations in PMP, but the decline warrants urgent attention to integrating conservation strategies such as restoration programmes in conjunction with a sustainable giant clam fishery. Given the relatively high genetic diversity of T. maxima at Rhu Island, expansion of the current MPA is needed for better conservation coverage. [ABSTRACT FROM AUTHOR]

• Spatial variability of HAB species in the micro-eukaryotic protist community of the eastern Malaysian Peninsula, South China Sea was investigated by DNA metabarcoding. • The results revealed 29 molecular HAB taxa, dominated by Alexandrium tamiyavanichii. • The diversity and community structure of HABs varied in space with different HAB taxa occupied in different environmental niches across the region. A large-scale sampling was undertaken during a research cruise across the South China Sea in August 2016, covering an area of about 100,000 km2 to investigate the molecular diversity and distributions of micro-eukaryotic protists, with a focus on the potentially harmful microalgal (HAB) species along the east coast of Peninsular Malaysia. Environmental DNAs from 30 stations were extracted and DNA metabarcoding targeting the V4 and V9 markers in the 18S rDNA was performed. Many protistan molecular units, including previously unreported HAB taxa, were discovered for the first time in the water. Our findings also revealed interesting spatial distribution patterns, with a marked signal of compositional turnover between latitudinal regimes of water masses, where dinophytes and diatom compositions were among the most strongly enhanced at the fronts, leading to distinct niches. Our results further confirmed the widespread distribution of HAB species, such as the toxigenic Alexandrium tamiyavaichii and Pseudo-nitzschia species, and the fish-killing Margalefidinium polykrikoides and Karlodinium veneficum. The molecular information obtained from this study provides an updated HAB species inventory and a toolset that could facilitate existing HAB monitoring schemes in the region to better inform management decisions. [ABSTRACT FROM AUTHOR]

• Two new species of Chattonella detected from Southeast Asia are described based on their chloroplasts. • Chattonella tenuiplastida was distributed in Ko Chang and Rayong, Thailand and Sarawak, Malaysia. • Chattonella malayana was detected in the northeastern coast of Peninsular Malaysia. • Chattonella malayana caused a wild fish mortality in Bachok, Kelantan, Malaysia in 2016. • Phylogeography of Chattonella spp. occurrences in the Asia-Pacific region is updated. Fisheries damage caused by Chattonella red tide has been recorded in Southeast Asia. Molecular studies have clarified the presence of two species, Chattonella marina complex and Chattonella subsalsa in the region, unlike East Asia that had only C. marina complex. To elucidate the phylogeography of Chattonella in Asia, further phylogenetic and morphological examinations were carried out with 33 additional culture strains, including the strains isolated during a bloom of Chattonella sp. (up to 142 cells mL−1) that was associated with a wild fish mortality along the northeastern coast of Peninsular Malaysia in 2016, and those from Yellow Sea, where the Chattonella genotypes have not been determined. LSU rDNA and ITS2 trees showed five intrageneric clades in the genus Chattonella , which were clades I and II (C. subsalsa), clade III (C. marina complex) and two new clades, namely clade IV from Thailand and Malaysia, and clade V from Peninsular Malaysia. The positions of the two new clades were different in LSU rDNA and ITS2 trees. LSU rDNA divergences of clades IV and V from the other clades were ≥ 4.01% and ≥ 5.70%, while their ITS2 divergences were ≥ 7.44% and ≥ 16.43%, respectively. Three and five compensatory base changes (CBCs) were observed in the clades IV and V, respectively, when compared to each of their closest clade. Cells from clades IV and V showed similar morphology to C. marina complex and C. subsalsa clade II, including the presence of button-like granules on cell surface and oboe-shaped mucocysts. However, cell size, the number and shape of chloroplasts in Chattonella clades IV and V, and the non-stacked thylakoids penetrated the pyrenoid in C. subsalsa clade II, were distinctive. Based on the diagnostic chloroplast shape, we proposed the designation of clades IV and V to two new species, Chattonella tenuiplastida sp. nov. and Chattonella malayana sp. nov. [ABSTRACT FROM AUTHOR]

• Ostreopsis siamensis identified from waters of Peninsular Malaysia found to produce Ostreocin-B and Ostreocin-D. • Two clades of Ostreopsis cf. ovata (A and B) were identified in the South China Sea. • Ostreopsis cf. ovata clade A produces Ovatoxin k and j2, but clade B is nontoxic. In the dinophyte genus Ostreopsis , seven out of 11 described species are known to produce various toxic compounds that were characterized in the palytoxins family. Species in the genus shared identical thecal plate patterns but differed in size, shape, and thecal plate ornamentation. Two species, O. cf. ovata and O. siamensis , have been reported from the Western Pacific, but information on toxin production is scarce. Here, we established nine strains of Ostreopsis from six localities in the South China Sea (SCS), covering the Gulf of Thailand, northern SCS (Hainan Island, Beibu Bay), and southern SCS (Peninsular Malaysia). Their morphology was examined by light and electron microscopy and the molecular phylogeny was inferred based on the LSU rDNA (D1-D3) and ITS rDNA sequences using maximum likelihood and Bayesian inference. Both O. cf. ovata and O. siamensis , albeit morphologically closely related, can be distinguished by a feature of the thecal pores with pronounced ridges in the latter. Molecular data further supported their species identity. Toxin production in the strains was examined by LC-MS/MS. O. cf. ovata strain T5PRBost02 was observed to produce Ovatoxin-k and Ovatoxin-j2 only; while Ostreocin-B and Ostreocin-D was produced by O. siamensis strain T10PRBost04. This is the first report confirming the production of palytoxins analogs in Ostreopsis species from the region. [ABSTRACT FROM AUTHOR]