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Data on the carbon and oxygen isotopic composition of carbonates from the rocks of the Giyani greenstone belt, Kaapvaal craton, South Africa are presented. This belt is immediately adjacent to the Hout River Shear Zone, along which the Southern Marginal Zone (SMZ) of the Limpopo granulite complex is overthrusted onto the Kaapvaal craton. The δ13C values are –2.1 and –2.2‰ for carbonates from two metapelite samples, –5.1‰ for a meta ultrabasite sample, and –7.1 and –7.7‰ for two metabasite samples, respectively. The δ18О values are 17.1 and 17.5‰ for carbonates from the metapelites, 14.3‰ for carbonates from the metaultrabasite, and 12.9 and 13.0‰ for carbonates from the metabasites. The comparison of the data obtained to the published data on the isotopic composition of carbonates from the rocks of the different greenstone belts indicates both hydrothermal (in the metabasites and the metaultrabasite) and sedimentary (in the metapelites) origins of the carbonate material in the rocks studied. Based on the comparison of these data to δ13C of magnesite that formed in ultrabasic granulites during the interaction of the Limpopo complex with the craton, the graphite and fluid inclusions in leucocratic garnet-bearing granitoids that transported fluids, and the carbon isotopic composition of graphite from metapelites of the SMZ, it is concluded that the carbon source was located outside the SMZ and represented a heterogeneous carbonate-bearing lithologies. It could be carbonate-bearing volcanogenic–sedimentary sequences of the greenstone belts of the Kaapvaal craton, which underwent prograde metamorphism during the interaction with the SMZ granulites. [ABSTRACT FROM AUTHOR]