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A Gram-negative, aerobic, non-flagellated and coccoid, ovoid or rod-shaped bacterial strain, designated SSK1-4(T), was isolated from the junction between the ocean and a freshwater spring at Jeju island, South Korea. Strain SSK1-4(T) was found to grow optimally at 30 °C, at pH 7.0-8.0 and in the presence of 2.0 % (w/v) NaCl. In the neighbour-joining, maximum-likelihood and maximum-parsimony phylogenetic trees based on 16S rRNA gene sequences, strain SSK1-4(T) was found to form an evolutionary lineage independent of those of other genera within the family Rhodobacteraceae. Strain SSK1-4(T) exhibited the highest 16S rRNA gene sequence similarity values to the type strains of Ruegeria lacuscaerulensis (94.99 %), Ruegeria atlantica (94.98 %) and Rhodovulum marinum (94.97 %). Sequence similarities to the type strains of other recognized species were less than 94.87 %. Strain SSK1-4(T) was found to contain Q-10 as the predominant ubiquinone and C18:1 ω7c and cyclo-C19:0 ω8c as the major fatty acids. The polar profile of strain SSK1-4(T) was found to contain phosphatidylglycerol, sulfoquinovosyldiacylglycerol, an unidentified lipid and an unidentified aminolipid as major components, which distinguish it from those of the phylogenetically related taxa. The DNA G+C content of strain SSK1-4(T) was determined to be 58.4 mol%. On the basis of the phylogenetic data and the chemotaxonomic and other phenotypic properties, strain SSK1-4(T) is considered to represent a new genus and species within the class Alphaproteobacteria, for which the name Confluentimicrobium lipolyticum gen. nov., sp. nov. is proposed. The type strain of C. lipolyticum is SSK1-4(T) (=KCTC 42136(T) = CECT 8621(T)). In addition, an emended description of Actibacterium mucosum Lucena et al. 2012 is also proposed.

Atmospheric mercury pollution was recognized after a large oil spill on the west coast of Korea on 7 December 2007. In this study, the concentrations of gaseous elemental mercury (GEM: Hg(0)) in air were measured both shortly after the oil spill ( approximately 100h) and 1month after the accident near the accident site. When the Hg concentration levels were compared between two seashore sites and two parallel sites offshore, the values tend to decrease further offshore. The unusual rise in Hg concentration levels observed on the seashore area shortly after the accident (mean of 16.4+/-9.85ngm(-3)) dropped dramatically after 1month with active cleanup activities (2.99+/-1.40ngm(-3)). Because of the connection between crude oil and Hg (one of the major impurities), the unusual rise in the atmospheric Hg after the oil spill can be explained by the active evasion of Hg from the spilled crude oil. Although Hg levels determined a few days after the accident did not exceed the reference exposure limits (REL) proposed by several agencies, the early build-up of elemental mercury level due to the oil spill might have exerted certain impacts on the surrounding environments.

In this study, the environmental significance of mercury emission has been investigated with respect to the use of the barbecue (BBQ) charcoal. For this purpose, emission gas samples collected from a total of 11 barbecue charcoal products commonly available in the Korean market were analyzed. All of these products consist of both domestic (4 types) and imported products (7 types from three countries). The emission concentration of Hg varied widely from sample to sample ranging from 114 to 496ngm(-3). The amount of Hg emission appeared to be affected by the diverse nature of raw materials and/or the processes involved in their production. In light of the recent reference exposure limits (REL) of Hg, it can be a potential threat to human health. As such, a proper regulation is desirable from a toxicological viewpoint to reduce the potential risk associated with the use of BBQ charcoal.

An HPLC system was automated for the measurement of gaseous hydroperoxides in the ambient air. In this system, samples collected using a glass coil without a long sampling tube are injected automatically into HPLC. The analytical system is based on the post-column derivatization, which is a reaction of hydroperoxides with p-hydroxyphenyl acetic acid to produce a fluorescent dimer in the presence of horseradish peroxidase as an enzyme catalyst. The detection limits of hydrogen peroxide (H(2)O(2)) were from 0.018 to 0.042 ppbv. The gaseous hydroperoxides were measured in Gwangju during March, May and October 2002, and in Seoul during June 2002. H(2)O(2) concentrations were remarkably low and almost at the detection limit during a period of the yellow sand (Asian dust). These results might be strongly ascribed to the effect of Asian dust particles for heterogeneous loss of peroxides and partly loss of samples due to the storage of sample and analysis. Methyl hydroperoxide (CH(3)OOH) was identified and quantified only in Seoul. The highest concentrations of H(2)O(2) were 0.24, 2.84, and 0.89 ppbv during March, May, October, respectively in Gwangju, and 5.19 ppbv in Seoul. The concentration of CH(3)OOH was as high as 1.1 ppbv and sometimes its concentration was higher than that of H(2)O(2) in the early morning or in the late night. The variability of CH(3)OOH was lower than that of H(2)O(2). H(2)O(2) showed a positive relationship with O(3) (r = 0.54, P < 0.01 level; two-tailed), solar radiation (r = 0.61, P < 0.01 level; two-tailed), temperature (r = 0.66, P < 0.01 level; two-tailed), and a negative relationship with NO( x ) (r = -0.20, P < 0.05 level; two-tailed), and relative humidity (r = -0.58, P < 0.01 level; two-tailed) in Seoul. Thus, photochemical activity is considered an important factor in gaseous H(2)O(2) and CH(3)OOH distribution.

A critical step in the process of metagenome analysis is to screen for clones that contain specific genes among a large number of clones. To form one of the sequence-based screening tools of a metagenome library, we designed a format of microarray [metagenome microarray (MGA)] that is arrayed with fosmid library clone DNA samples on a glass slide. We evaluated the MGA using random prime labeled fluorescent probes prepared from PCR products of the target gene and found that we could obtain specific hybridization signals only for the fosmid clone that contained the target gene. We found that the detection limit of the MGA was c. 10 ng microL(-1) of fosmid clone DNA, and that the MGA-based hybridization was quantitative within a concentration range of 10-200 ng microL(-1) of fosmid clone DNA. We used the MGA successfully to identify two fosmid clones that contained 16S rRNA genes from a fosmid library from the sediment of the East Sea, Korea. In conclusion, we have demonstrated that the MGA can be used for screening for fosmid clones containing specific genes in a metagenome library, and that this technology has potential application as a high-throughput metagenome screening tool.

The concentrations of total gaseous mercury (TGM) and its relevant environmental parameters were measured at a highly industrialized area in the Ban Wall industrial complex (BWIC) in An San city, Korea from March to May 2005. The mean concentrations of Hg measured during the entire study period were computed to be 6.32+/-8.56 ng m(-3) (range of 2.32-181 ng m(-3); N=1,160). Due to the effects of strong man-made activities, the significantly high Hg concentration levels (e.g., at or above 10 ng m(-3)) comprised about 7.5% of all data with the mean of 21.8+/-26.3 ng m(-3) (N=87). By separating the data into daytime and nighttime periods, the Hg values exhibited a notable daytime enhancement possibly due to strong man-made activities during working hours. The results of the correlation analysis indicated the possible relationship between the Hg concentration and the temperature as well as several pollutant species (e.g., NO(2) and NO(x)). Evaluation of the Hg data in relation with the air mass transport pattern confirms that the Hg concentration levels in this industrial area are affected most eminently by local, rather than distant, pollution sources.

To analyze polycyclic aromatic hydrocarbons (PAHs) at an urban site in Seoul, South Korea, 24-hr ambient air PM2.5 samples were collected during five intensive sampling periods between November 1998 and December 1999. To determine the PAH size distribution, 3-day size-segregated aerosol samples were also collected in December 1999. Concentrations of the 16 PAHs in the PM2.5 particles ranged from 3.9 to 119.9 ng m(-3) with a mean of 24.3 ng m(-3). An exceptionally high concentration of PAHs( approximately 120 ng m(-3)) observed during a haze event in December 1999 was likely influenced more by diesel vehicle exhaust than by gasoline exhaust, as well as air stagnation, as evidenced by the low carbon monoxide/elemental carbon (CO/EC) ratio of 205 found in this study and results reported by previous studies. The total PAHs associated with the size-segregated particles showed unimodal distributions. Compared to the unimodal size distributions of PAHs with modal peaks at < 0.12 microm measured in highway tunnels in Los Angeles (Venkataraman and Friedlander, 1994), four- to six-ring PAHs in our study had unimodal size distributions, peaking at the larger size range of 0.28-0.53 microm, suggesting the coagulation of freshly emitted ultrafine particles during transport to the sampling site. Further, the fraction of PAHs associated with coarse particles(> 1.8 microm) increased as the molecular weight of the PAHs decreased due to volatilization of fine particles followed by condensation onto coarse particles.

In the present study, the distribution patterns of various metals were analyzed and compared using PM samples collected concurrently from three monitoring sites located in Korea (Seoul, Busan, and Jeju island) in December 2002. As these sites can represent metal pollution with different degrees of anthropogenic activities, their concentration levels were distinguished in a systematic manner in the order of Jeju, Busan, and Seoul. By comparing the present data sets with those measured previously from other locations in Korea and around the world, we attempted to diagnose the general status of elemental pollution on the Korean peninsula. Through an application of different statistical approaches, the major processes controlling elemental levels were assessed for each of the three study sites. The results indicated the importance of both crustal and anthropogenic sources in all sites with their relative roles varying significantly from each other. The results of the metal analysis data, when examined in relation to back trajectory analysis, confirmed that their concentration changes are affected quite sensitively with air mass movement patterns. The overall results of this study consistently indicated the contribution of a strong anthropogenic source area (e.g., China) to the observed metal concentration levels in the study area, but the strengths of such signals vary considerably across the Korean peninsula.

The atmospheric concentrations of dimethylsulfide (DMS) and carbon disulfide (CS2) were measured concurrently with relevant environmental parameters at Gosan, Jeju Island, Korea during 5-26 April 2001. The mean concentrations for these two compounds were 18.7+/-17.9 and 6.4+/-9.9 pptv, respectively. Results of our analysis indicated that relative temporal variations between DMS and CS2 can be best described by dividing the whole data set into three different periods which reflect the variable transport patterns of air masses into the study area. (Periods I, II, and III denote: 5-10, 10-18, and 19-26 April.) The environmental conditions during those three periods varied greatly. The effects of continental and/or oceanic processes were evident for certain periods, yielding diverse relationships between DMS and CS2 in both absolute and relative terms. Most observed variations were best explained in terms of an interplay between source/sink processes and air mass transport patterns. The sea-to-air flux of DMS, when estimated using our measurement data during this study period, was approximately 4 micromole m(-2)d(-1).

A recently developed electron probe X-ray microanalysis (EPMA), called low-Z EPMA, employing an ultrathin window energy-dispersive X-ray detector, was applied to characterize aerosol particles collected at two sampling sites, namely, Kosan and 1100 Hill of Cheju Island, Korea, on a summer day in 1999. Since low-Z EPMA can provide quantitative information on the chemical composition of aerosol particles, the collected aerosol particles were classified and analyzed based on their chemical species. Many different particle types were identified, such as marine-originated, carbonaceous, soil-derived, and anthropogenic particles. Marine-originated particles, such as NaNO3- and Na2SO4-containing particles, are very frequently encountered in the two samples. In this study, it was directly proven that the observed nitrate particles were from sea salts. In addition, two types of nitrate particles from sea salts were observed, with and without Mg. The sodium nitrate particles without Mg were believed to be collected as crystalline form, either with the sodium nitrate particles being fractionally recrystallized within evaporating seawater drops or with recrystallized sodium chloride particles having reacted with gaseous nitrogen species in the air to form the crystalline sodium nitrate particles. The other seemed to be collected as seawater drops, where the atmospheric reaction had occurred in the droplets, and thus sodium as well as magnesium nitrates were observed. Carbonaceous particles are the most abundant in the samples at both sites. From this study, it was found that about three-quarters of the carbonaceous particles in the samples were biogenic, which partially explains a previously reported observation of a large concentration of organic carbon particles as compared to elemental carbon. Various soil-derived particles were also observed. In addition to aluminosilicate- and iron oxide-containing particles, which are ubiquitous components in soil-derived particles, CaCO3-, Al2O3- and Cr-containing particles were also frequently encountered.

A 58-year-old man described a short history of dyspnea and a preceding flu like illness with roentgenographic features of an interstitial lung disease. An open lung biopsy specimen from him showed bronchiolitis obliterans with organizing pneumonia (BOOP). Adenovirus was isolated from a throat swab. There was both clinical and radiographic improvement with supportive care. We herein report a first case of BOOP associated with adenovirus in Korea.