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A survey of seed chalcids from woody plants in Kenya revealed 12 species belonging to the genus Megastigmus Dalman, 1820, and has increased to 16 the number of Megastigmus species presently recorded from the Afrotropical Region, of which at least 13 are seed feeders. A key to female Megastigmus of the Afrotropical Region is provided. Eight new species are described from morphological evidence: M. lanneae Roques & Copeland, M. laventhali Roques & Copeland, M. ozoroae Roques & Copeland, and M. smithi Roques & Copeland in seeds of species of the family Anacardiaceae, M. copelandi Roques & Copeland and M. grewianae Roques & Copeland in seeds of Malvaceae, M. helinae Roques & Copeland in seeds of Rhamnaceae, and M. icipeensis Roques & Copeland for which no host is known. These collections include the first records of Malvaceae and Rhamnaceae as hosts of Megastigmus seed chalcids, which appear to have radiated in Angiosperms much more than previously considered. Analyses of the mitochondrial (cytochrome oxidase subunit one - COI) and nuclear DNA (28S ribosomal region) could be carried out on 8 of the 16 African species of which 5 were newly described ones. The species associated with Anacardiaceae always clustered together in phylogenies, confirming the existence of a strong and ancestral monophyletic clade, unlike the ones associated with Malvaceae and Rhamnaceae, whose position remains unclear. All holotypes are deposited in the National Museums of Kenya. [ABSTRACT FROM AUTHOR]