1. Genomic and phenotypic characterisation of Leeuwenhoekiella obamensis sp. nov., a novel marine bacterium isolated from the surface water of a Japanese fishing port.
- Author
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Machii Y, Tsukamoto M, Kataoka T, and Kondo R
- Subjects
- Japan, Base Composition, Fatty Acids analysis, Fatty Acids chemistry, Seawater microbiology, Bacterial Typing Techniques, Phenotype, Sequence Analysis, DNA, Genomics, East Asian People, Phylogeny, RNA, Ribosomal, 16S genetics, DNA, Bacterial genetics, Genome, Bacterial
- Abstract
A novel aerobic marine bacterium, FRT2
T , isolated from surface water of a fishing port in Fukui, Japan, was characterised based on phylogenomic and phylogenetic analyses combined with classical phenotypic and chemotaxonomic characterisations. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain FRT2T clustered with genus Leeuwenhoekiella. Closest relatives of FRT2T were Leeuwenhoekiella palythoae KMM 6264T and Leeuwenhoekiella nanhaiensis G18T with 16S rRNA gene sequence identities of 95.1% and 94.5%, respectively, suggesting that FRT2T is a novel species of genus Leeuwenhoekiella. Phylogenetic analysis of 81 bacterial core gene sequences also placed FRT2T in a highly supported lineage distinct from described Leeuwenhoekiella species. Values of digital DNA-DNA hybridisation and average nucleotide identity between FRT2T and type strains of species of genus Leeuwenhoekiella indicate that FRT2T is a novel species of the genus Leeuwenhoekiella. Cells were Gram-stain-negative rods with 0.3-0.8 µm width and 1.6-4.1 µm length. The bacterium was strictly aerobic, produced yellow-orange-pigments and showed gliding motility. Na+ was needed to grow FRT2T with optimal growth in the presence of 3.0-4.0% (w/v) NaCl. Growth pH and temperature ranges were 5.5-8.5 (optimum pH 6.5-7.5) and 10-39 °C (optimum 25-35 °C), respectively. Major cellular fatty acids were iso-C15:0 , iso-C15:1 , iso-C17:0 3-OH and summed feature 3 (C16:1 ω6c and/or C16:1 ω7c). The only respiratory quinone was MK-6. Genomic G + C content of FRT2T was 38.9%. FRT2T represents a novel species, for which the name Leeuwenhoekiella obamensis sp. nov. is proposed, with type strain FRT2T (= BCRC 81451T = DSM 118489T = JCM 36940T )., Competing Interests: Declarations. Conflicts of interest: The authors declare that there are no conflicts of interest. Ethical approval: Ethical approval was not required because this article did not contain any studies involving humans or animals. Consent for publication: Consent for publication was not applicable because this article did not contain personal details., (© 2025. The Author(s), under exclusive licence to Springer Nature Switzerland AG.)- Published
- 2025
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