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The effectiveness of a Marine Protected Area (MPA) is strongly related to its zoning design, management, and surveillance, and fish communities are considered indicators of conservation effects. Posidonia oceanica beds and fish assemblages were studied here to evaluate the fishing impacts and the effectiveness of the Marine Protected Areas (MPAs) of Santa Maria di Castellabate (SMC) and Costa degli Infreschi e della Masseta (CIM) in the South Tyrrhenian Sea, Italy. P. oceanica characteristics were estimated counting and collecting shoots, while fish communities were investigated by visual census. Multivariate analyses were performed to detect differences in fish assemblages among the MPA protection levels and seagrass characteristics. Significant differences in fish communities were observed between the depth and protection levels. The latter are probably due to the zoning design at SMC, which does not allow a spillover effect, and to fishing activities, as showed by the ABC curve results. Trophic analyses suggested the use of longlines at SMC, due to the dominance of planktivorous fish species, and of trammel nets at CIM, due to the great heterogeneity of the fish trophic groups. Shoot density and leaf length were significantly correlated with fish communities. CCA analyses showed omnivorous species, mostly belonging to the Sparidae family, correlated with the highest shoot densities, with their feeding habits mostly directed to crustaceans, while macro- and microinvertivores, mainly belonging to the Serranidae and Labridae families, correlated with the highest leaf lengths, where they sough shelter and feed. In conclusion, the data suggest that a zoning redesign at SMC and an increase in the surveillance of fishing activities at CIM might enhance the effectiveness of these MPAs, highlighting the role of fish community studies in identifying MPA efficiency issues and providing trustful guidelines for their management. [ABSTRACT FROM AUTHOR]