1. Genomic analysis of global Plasmodium vivax populations reveals insights into the evolution of drug resistance.
- Author
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Ngwana-Joseph GC, Phelan JE, Manko E, Dombrowski JG, da Silva Santos S, Suarez-Mutis M, Vélez-Tobón G, Tobón Castaño A, Machado RLD, Marinho CRF, Nolder D, Nosten F, Sutherland CJ, Campino S, and Clark TG
- Subjects
- Humans, Indonesia, Chloroquine pharmacology, Chloroquine therapeutic use, Quinolines pharmacology, Protozoan Proteins genetics, Protozoan Proteins metabolism, Artemisinins pharmacology, Artemisinins therapeutic use, Genomics, Multidrug Resistance-Associated Proteins genetics, Multidrug Resistance-Associated Proteins metabolism, Evolution, Molecular, Genome, Protozoan genetics, Piperazines, Plasmodium vivax genetics, Plasmodium vivax drug effects, Drug Resistance genetics, Antimalarials pharmacology, Antimalarials therapeutic use, Malaria, Vivax parasitology, Malaria, Vivax drug therapy, Polymorphism, Single Nucleotide
- Abstract
Increasing reports of chloroquine resistance (CQR) in Plasmodium vivax endemic regions have led to several countries, including Indonesia, to adopt dihydroarteminsin-piperaquine instead. However, the molecular drivers of CQR remain unclear. Using a genome-wide approach, we perform a genomic analysis of 1534 P. vivax isolates across 29 endemic countries, detailing population structure, patterns of relatedness, selection, and resistance profiling, providing insights into potential drivers of CQR. Selective sweeps in a locus proximal to pvmdr1, a putative marker for CQR, along with transcriptional regulation genes, distinguish isolates from Indonesia from those in regions where chloroquine remains highly effective. In 106 isolates from Indonesian Papua, the epicentre of CQR, we observe an increasing prevalence of novel SNPs in the candidate resistance gene pvmrp1 since the introduction of dihydroartemisinin-piperaquine. Overall, we provide novel markers for resistance surveillance, supported by evidence of regions under recent directional selection and temporal analysis in this continually evolving parasite., Competing Interests: Competing interests: The authors declare no competing interests., (© 2024. The Author(s).)
- Published
- 2024
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