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The adverse effects of intensified cropland practices on soil quality and biodiversity become especially evident in India, where nearly 60% of land is dedicated to cultivation and almost 30% of soil is already degraded. Intensive agricultural practice significantly contributes to soil degradation, highlighting the crucial need for effective countermeasures to support sustainable development goals. A long-term experiment, established in the semi-arid Nimar Valley (India) in 2007, monitors the effect of organic and conventional management on the plant-soil system in a Vertisol. The focus of our study was to assess how organic and conventional farming systems affect biological and chemical soil quality indicators. Additionally, we followed the community structure of the soil microbiome throughout the vegetation phase under soya or cotton cultivation in the year 2019. We found that organic farming enhanced soil organic carbon and nitrogen content, increased microbial abundance and activity, and fostered distinct microbial communities associated with traits in nutrient mineralization. In contrast, conventional farming enhanced the abundance of bacteria involved in ammonium oxidation suggesting high nitrification and subsequent nitrogen losses with regular mineral fertilization. Our findings underscore the value of adopting organic farming approaches in semi-arid subtropical regions to rectify soil quality and minimize nitrogen losses., (© The Author(s) 2024. Published by Oxford University Press on behalf of FEMS.)

Bipolaris maydis is pathogen of maize which causes maydis leaf blight disease. In India major losses occur due to the B. maydis race "O" pathogen, whereas in other parts of the world, major losses are due to the race "T" pathogen. In the present study, we conducted an in planta transcriptomics study of the B. maydis race "O" pathogen after infection on non-CMS maize resistant and susceptible genotypes by mRNA sequencing to understand the molecular basis of pathogenicity for better management of the pathogen. Approximately 23.4 GB of mRNA-seq data of B. maydis were obtained from both resistant and susceptible maize backgrounds for fungus. Differentially expressed genes (DEGs) analysis of B. maydis in two different genetic backgrounds suggested that the majority of highly DEGs were associated with mitochondrial, cell wall and chitin synthesis, sugar metabolism, peroxidase activity, mitogen-activated protein kinase (MAPK) activity, and shikimate dehydrogenase. KEGG analysis showed that the biosynthetic pathways for secondary metabolism, antibiotics, and carbon metabolism of fungus were highly enriched, respectively, in susceptible backgrounds during infection. Previous studies in other host pathogen systems suggest that these genes play a vital role in causing disease in their host plants. Our study is probably the first transcriptome study of the B. maydis race "O" pathogen and provides in-depth insight of pathogenicity on the host. [ABSTRACT FROM AUTHOR]

Background: Studies of epigenomic alterations associated with diseases primarily focus on methylation profiles of promoter regions of genes, but not of other genomic regions. In our past work (Das et al. 2019) on patients suffering from gingivo-buccal oral cancer - the most prevalent form of cancer among males in India - we have also focused on promoter methylation changes and resultant impact on transcription profiles. Here, we have investigated alterations in non-promoter (gene-body) methylation profiles and have carried out an integrative analysis of gene-body methylation and transcriptomic data of oral cancer patients.Methods: Tumor and adjacent normal tissue samples were collected from 40 patients. Data on methylation in the non-promoter (gene-body) regions of genes and transcriptome profiles were generated and analyzed. Because of high dimensionality and highly correlated nature of these data, we have used Random Forest (RF) and other data-analytical methods.Results: Integrative analysis of non-promoter methylation and transcriptome data revealed significant methylation-driven alterations in some genes that also significantly impact on their transcription levels. These changes result in enrichment of the Central Carbon Metabolism (CCM) pathway, primarily by dysregulation of (a) NTRK3, which plays a dual role as an oncogene and a tumor suppressor; (b) SLC7A5 (LAT1) which is a transporter dedicated to essential amino acids, and is overexpressed in cancer cells to meet the increased demand for nutrients that include glucose and essential amino acids; and, (c) EGFR which has been earlier implicated in progression, recurrence, and stemness of oral cancer, but we provide evidence of epigenetic impact on overexpression of this gene for the first time.Conclusions: In rapidly dividing cancer cells, metabolic reprogramming from normal cells takes place to enable enhanced proliferation. Here, we have identified that among oral cancer patients, genes in the CCM pathway - that plays a fundamental role in metabolic reprogramming - are significantly dysregulated because of perturbation of methylation in non-promoter regions of the genome. This result compliments our previous result that perturbation of promoter methylation results in significant changes in key genes that regulate the feedback process of DNA methylation for the maintenance of normal cell division. [ABSTRACT FROM AUTHOR]

Mungbean, is a widely cultivated pulse crop in India, experiences severe drought stress during the cultivation period. The mechanism of drought tolerance in mungbean is not well understood. In this presents study we screened 7 widely cultivated mungbean genotypes towards their drought sensitivity at seedling stage and transcriptome sequencing of drought-tolerant and susceptible genotype to understand the drought tolerance mechanism. Our physiological data such as increase in root length, shoot length, fresh weight, dry weight, relative water content (RWC), proline content, MDA content and molecular data in terms of quantitative expression of drought stress responsive genes under 3-d drought stress in mungbean suggests that, K851 seems to be most drought tolerant and PDM-139 as drought susceptible genotype. The transcriptomic study between K-851 and PDM-139 revealed 22,882 differentially expressed genes (DEGs) which were identified under drought stress, and they were mainly mapped to phytohormone signal transduction, carbon metabolism and flavonoid biosynthesis. Out of these, 10,235 genes were up-regulated and 12,647 genes were down-regulated. Furthermore, we found that, the DEGs related to, phytohormone signal transduction, carbon metabolism and flavonoid biosynthesis and they were more induced in K-851. Our data suggested that, the drought tolerant genotype K-851, scavenges the damage of drought stress by producing more amount of osmolytes, ROS scavengers and sugar biosynthesis. • Drought is the most serious factor among various stresses limiting crop productivity. • Mungbean (Vigna radiata) is a drought-sensitive crop and the mechanism of drought tolerance in mungbean is not well understood. • In this study, we screened 7 widely cultivated mungbean genotypes towards their drought sensitivity and performed transcriptome sequencing between tolerant (K-851) and sensitive (PDM-139) genotype to explore the drought tolerance mechanism in mungbean. • The transcriptomic study between K-851 and PDM-139 revealed 22,882 differentially expressed genes (DEGs) under drought stress and they were mainly mapped to phytohormone signal transduction, carbon metabolism and flavonoid biosynthesis. •The transcriptome sequencing revealed 10,235 genes were up-regulated and 12,647 were down-regulated. •The DEGs related to phytohormone signal transduction, carbon metabolism and flavonoid biosynthesis are much more induced in K-851 in compare to PDM-139. [ABSTRACT FROM AUTHOR]

Introduction: Prostate neoplasm is a major health problem globally since last two decades. Among the contributory factors in aetiopathogenesis, oxidative stress and one carbon metabolism are also important. Aim: To compare the serum level of vitamin B12, homocysteine and Malondialdehyde (MDA) between prostate cancer, Benign Prostatic Hyperplasia (BPH) and control subjects to find out the status of oxidative stress and one carbon metabolism in prostate tumours. Materials and Methods: Forty patients each with BPH and Prostate cancer along with 40 age matched healthy controls were selected in an observational cross-sectional study, attending the outpatient and inpatient Department of Urology, IPGME&R, Kolkata, West Bengal, India, from January 2018 to June 2019. Oxidative stress for these patients was estimated by measuring lipid peroxidation product MDA by Thiobarbituric Acid Reactive Substances (TBARS) assay with spectrophotometer. Vitamin B12 and homocysteine were also analysed as a marker of one carbon metabolism by chemiluminescent method. Biochemical parameters such as fasting and post-prandial blood sugar, urea, creatinine and liver function tests were measured by autoanalyser to rule out diabetes and any underlying hepatic and renal pathology. All the data were then analysed using statistical software SPSS version 24. The groups were compared using student's unpaired t-test and Pearson's correlation coefficient was applied to observe the correlation between variables. Results: A statistically significant rise of oxidative stress was found in BPH and prostate cancer cases compared to age matched control. Regarding one carbon metabolism, this study fails to demonstrate any statistically significant difference of Vitamin B12 level between BPH and control as well as between prostate cancer and control group. However, high serum homocysteine is associated with both BPH and prostate cancer compared to the controls. Conclusion: In the present study, statistically significant increase in oxidative stress and serum homocysteine level and no difference of serum vitamin B12 was found in BPH and prostate cancer cases compared to control group. Longitudinal studies are however required to establish any relationship and to investigate the potential role of homocysteine as a novel tumour marker. [ABSTRACT FROM AUTHOR]

Accurate estimation of carbon cycle is a challenging task owing to the complexity and heterogeneity of ecosystems. Carbon Use Efficiency (CUE) is a metric to define the ability of vegetation to sequester carbon from the atmosphere. It is key to understand the carbon sink and source pathways of ecosystems. Here, we quantify CUE using remote sensing measurements to examine its variability, drivers and underlying mechanisms in India for the period 2000-2019, by applying the principal component analyses (PCA), multiple linear regression (MLR) and causal discovery. Our analysis shows that the forests in the hilly regions (HR) and northeast (NE), and croplands in the western areas of South India (SI) exhibit high (>0.6) CUE. The northwest (NW), Indo-Gangetic plain (IGP) and some areas in Central India (CI) show low (<0.3) CUE. In general, the water availability as soil moisture (SM) and precipitation (P) promote higher CUE, but higher temperature (T) and air organic carbon content (AOCC) reduce CUE. It is found that SM has the strongest relative influence (33%) on CUE, followed by P. Also, SM has a direct causal link with all drivers and CUE; reiterating its importance in driving vegetation carbon dynamics (VCD) for the cropland dominated India. The long-term analysis reveals that the low CUE regions in NW (moisture induced greening) and IGP (irrigation induced agricultural boom) have an increasing trend in productivity (greening). However, the high CUE regions in NE (deforestation and extreme events) and SI (warming induced moisture stress) exhibit a decreasing trend in productivity (browning), which is a great concern. Our study, therefore, provides new insights on the rate of carbon allocation and the need of proper planning for maintaining balance in the terrestrial carbon cycle. This is particularly important in the context of drafting policy decisions for the mitigation of climate change, food security and sustainability., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)

Background/objectives: Multi-nutrient insufficiencies as a consequence of nutritional and economic factors are common in India and other developing countries. We have examined the impact of multi-nutrient insufficiency on markers of one carbon (1C) metabolism in the blood, and response to a methionine load in clinically healthy young women.Subjects/methods: Young women from Pune, India (n=10) and Cleveland, USA (n=13) were studied. Blood samples were obtained in the basal state and following an oral methionine load (50 mg/kg of body weight in orange juice). Plasma concentrations of vitamin B12, folate and B6 were measured in the basal state. The effect of methionine load on the levels of methionine, total homocysteine, cysteine, glutathione and amino acids was examined.Results: Indian women were significantly shorter and lighter compared with the American women and had lower plasma concentration of vitamins B12, folate and B6, essential amino acids and glutathione, but higher concentration of total homocysteine. The homocysteine response to methionine load was higher in Indian women. The plasma concentrations of glycine and serine increased in the Indian women after methionine (in juice) load. A significant negative correlation between plasma B6 and homocysteine (r= -0.70), and plasma folate and glycine and serine levels were observed in the Indian group (P<0.05) but not in the American group.Conclusions: Multi-nutrient insufficiency in the Indian women caused unique changes in markers of whole body protein and 1C metabolism. These data would be useful in developing nutrient intervention strategies. [ABSTRACT FROM AUTHOR]

Mass balance is a good indicator of glacier health and sensitivity to climate change. The debris-covered Hoksar Glacier (HG) in the Upper Indus Basin (UIB) was studied using direct and geodetic mass balances. During the 5-year period from 2013 to 2018, the glacier's mean in situ mass balance (MB) was - 0.95 ± 0.39 m w.e. a -1 . Similarly, the glacier's mean geodetic MB from 2000 to 2012 was - 1.20 ± 0.35 m w.e. a -1 . The continuously negative MB observations indicated that the HG is losing mass at a higher rate than several other Himalayan glaciers. The glacier showed increased mass loss with increasing altitude, in contrast to the typical decreasing MB with increasing elevation, due to the existence of thick debris cover in the ablation zone, which thins out regularly towards the accumulation zone. Rising temperatures, depleting snowfall and increasing black carbon concentration in the region, indicators of climatic change, have all contributed to the increased mass loss of the HG. During the lean period, when glacier melt contributes significantly to streamflow, the mass loss of glaciers has had a considerable impact on streamflow. Water availability for food, energy, and other essential economic sectors would be adversely affected, if, glaciers in the region continued to lose mass due to climatic change. However, long-term MB and hydro-meteorological observations are required to gain a better understanding of glacier recession in the region as climate changes in the UIB., (© 2022. The Author(s).)

Shifting cultivation has resulted in large-scale deforestation and forest degradation in the tropics; however the abandoned fallows are known to have high potential for carbon capture. The paper is an attempt to determine the forest recovery patterns following shifting cultivation by evaluating the tree species composition, diversity and abundance with respect to topographical factors in Manipur, India. We also used ordination analysis to understand the change in species composition with regard to environmental variables. The living woody biomass carbon of each fallow was quantified, and the factors affecting the recovery of carbon stock along an increasing fallow gradient was assessed. Our results showed that the species richness and basal area recovered relatively with time since abandonment, and the north-facing lower elevation fallow sites displayed higher species richness and stem density than those in higher elevations. Environmental variables had no impact on the regeneration of Elaeocarpus floribundus Blume and Castanopsis hystrix Hook. f. & Thomson ex A. DC. which suggests that they may be capable of effective restoration of degraded forest areas. As these species appear naturally in the forests, it would facilitate quicker rehabilitation and reinstate the soil nutrients making the soil reusable in a short term. We also found that fallow age plays a vital role in recovering above-ground biomass carbon from living woody species followed by the aspect of the site. The total living woody biomass carbon ranged from 0.98 Mg ha-1 in 5 years fallow to 142.58 Mg ha-1 in 20 years fallow. The above-ground biomass carbon recovery of the oldest fallow was 39% to 40% of the reference undisturbed forest and the estimated time for the shifting cultivation fallows to reach that of the undisturbed forest level was approximately 39 years to 41 years., Competing Interests: The authors have declared that no competing interests exist.

Appropriate land configuration and assured nutrient supply are prerequisites for quality organic baby corn (Zea mays L.) production in high rainfall areas of the delicate Eastern Himalayan Region of India. A long term (5-year) study was conducted during 2012-2016 on a sandy loam soil in the mid attitude of Sikkim, Eastern Himalayan Region of India to evaluate the productivity, produce quality, the profitability of baby corn, and soil properties under different land configurations comprising flatbed, ridge and furrow, and broad bed and furrow, and organic nutrient management practices comprising un-amended control, farmyard manure 12 t ha -1 , vermicompost 4 t ha -1 and farmyard manure 6 t ha -1  + vermicompost 2 t ha -1 . The baby corn sown on broad bed and furrow had the tallest plant (149.25 cm), maximum dry matter (64.33 g plant -1 ), highest leaf area index (3.5), maximum cob length (8.10 cm), cob girth (6.13 cm) and cob weight (8.14 g) leading to significantly higher fresh baby corn yield (1.89 t ha -1 ), and net returns (US$ 906.1 ha -1 ) than those of other treatments. Mineral composition (phosphorus, potassium, iron, and zinc), protein, and ascorbic acid content were also the highest in baby corn grown under the broad bed and furrow system. The soil of broad bed and furrow had a higher pH, organic carbon content, organic carbon pools, microbial biomass carbon, and enzymatic activities (dehydrogenase, fluorescein diacetate, and acid phosphatase) compared to soils of other land configurations. A combined application of farmyard manure (6 t ha -1 ) + vermicompost (2 t ha -1 ) improved the crop growth and produced 117.8% higher fresh baby corn and 99.7% higher fodder yield over control (0.9 t fresh corn and 13.02 t fodder yield ha -1 ), respectively. This treatment also registered significantly higher gross return (US$ 1746.9 ha -1 ), net return (US$ 935.8 ha -1 ), and benefit-cost ratio (2.15) than other nutrient management practices. Fresh cob quality in terms of protein (22.91%) and ascorbic acid content (101.6 mg 100 g -1 ) was observed to be significantly superior under combined application of farmyard manure (6 t ha -1 ) + vermicompost (2 t ha -1 ) than those of other nutrient management systems. However, fresh baby corn cobs produced with vermicompost 4 t ha -1 had the highest concentration of phosphorus, potassium, iron, and zinc. Application of farmyard manure 12 t ha -1 registered the maximum increment in soil organic carbon content (1.52%), its pool (40.6 t ha -1 ) and carbon sequestration rate (0.74 t ha -1  year -1 ) followed by integrated application of farmyard manure (6 t ha -1 ) and vermicompost (2 t ha -1 ). The maximum soil microbial biomass carbon and enzymatic activities [dehydrogenase (22.1 µg TPF g -1 soil h -1 ) and fluorescein diacetate (67.1 µg FDA g -1 soil h -1 )] were noted with the combined use of farmyard manure (6 t ha -1 ) + vermicompost (2 t ha -1 ). Thus, the study suggests that the broad bed and furrow land configuration along with the combined application of farmyard manure + vermicompost could be an economically feasible practice for quality organic baby corn production and soil health improvement in the Eastern Himalaya and other similar eco-regions elsewhere.

The ecology and distribution of many bacteria is strongly associated with specific eukaryotic hosts. However, the impact of such host association on bacterial ecology and evolution is not well understood. Bacteria from the genus Methylobacterium consume plant-derived methanol, and are some of the most abundant and widespread plant-associated bacteria. In addition, many of these species impact plant fitness. To determine the ecology and distribution of Methylobacterium in nature, we sampled bacteria from 36 distinct rice landraces, traditionally grown in geographically isolated locations in North-East (NE) India. These landraces have been selected for diverse phenotypic traits by local communities, and we expected that the divergent selection on hosts may have also generated divergence in associated Methylobacterium strains. We determined the ability of 91 distinct rice-associated Methylobacterium isolates to use a panel of carbon sources, finding substantial variability in carbon use profiles. Consistent with our expectation, across spatial scales this phenotypic variation was largely explained by host landrace identity rather than geographical factors or bacterial taxonomy. However, variation in carbon utilisation was not correlated with sugar exudates on leaf surfaces, suggesting that bacterial carbon use profiles do not directly determine bacterial colonization across landraces. Finally, experiments showed that at least some rice landraces gain an early growth advantage from their specific phyllosphere-colonizing Methylobacterium strains. Together, our results suggest that landrace-specific host-microbial relationships may contribute to spatial structure in rice-associated Methylobacterium in a natural ecosystem. In turn, association with specific bacteria may provide new ways to preserve and understand diversity in one of the most important food crops of the world., Competing Interests: The authors have declared that no competing interests exist.

Lindane contamination in different environmental compartments is still posing a serious threat to our environment and effective measures need to be taken for the detoxification of lindane. Soil bacteria isolated from agricultural fields are known to possess certain plant growth promoting traits like the production of phytohormones, production of ammonia, nitrogen fixation and solubilization of phosphorus, etc. In the present study, an indigenous bacterial strain Paracoccus sp. NITDBR1 have been isolated from an agricultural field in Manipur, India which could grow on 100 mg L -1 lindane as the sole source of carbon and could degrade up to 90% of lindane in mineral salt media under liquid culture conditions in 8 days. The strain NITDBR1 was able to form biofilm in lindane media and the addition of substrate like glucose and sucrose enhanced the biofilm formation by 1.3 and 1.17-fold respectively in 3 days. The strain NITDBR1 could produce glycolipid and glycoprotein based biosurfactants. It was also found to possess plant growth promoting traits like nitrogen fixation and indole-3-acetic acid production to assist crop production. The phytotoxicity studies carried out on mustard seeds revealed that the degradation products formed after treatment with NITDBR1 could lower the toxicity of lindane for root elongation by 1.3-fold. Therefore, strain NITDBR1 could be useful for the bioremediation of soil contaminated with lindane with lesser damage to the environment, biofilm forming ability may help the bacteria survive under stressed environmental conditions, and biosurfactant production will help in increasing the bioavailability of contaminants. The plant growth promoting traits can be beneficial for agriculture. With such soil friendly activities coupled with pesticide degradation, this strain can be used for environmental as well as agricultural applications.

Seagrass ecosystems are vital for its regulatory services yet, highly threatened by degradation due to human pressures. Decomposition of two tropical seagrass species (Cymodocea serrulata and Cymodocea rotundata) was studied and compared, to understand their potential in generating additional nutrients to coastal waters. Release of carbon, nitrogen and phosphorus during the decomposition process of seagrass wracks was estimated in bacteria-active (non-poisoned) and bacteria-inhibited (poisoned) conditions from shore-washed fresh seagrass, sampled from Palk Bay, India. Incubation experiments for 25 days indicated a near three times higher concentration of dissolved organic carbon (DOC) in bacteria-inhibited flasks compared to bacteria-active conditions for both species. The maximum leaching rates of DOC, TDN and TDP were found to be 294, 65.1 and 11.2 μM/g dry wt/day, respectively. Further, higher release of dissolved inorganic nitrogen (DIN) (> 1.3 times) was documented from the bacteria-active flask, highlighting the significance of microbial process in generating bio-available nutrients from decaying seagrass. Faster decomposition (0.014 ± 0.004 day -1 ) in the initial stages (up to 8 days) compared to the later stages (0.005 ± 0.001 day -1 ) indicated a rapid loss of biomass carbon during the initial leaching process and its relative importance in the decomposition pathway. The decomposition rate is best described by a single-stage exponential decay model with a half-life of 41 days. It is estimated that the total seagrass litter available along the Palk Bay coast is about ~ 0.3 Gg with high potential of additional nitrogen (0.9 ± 0.5 Mg) and phosphorus (0.3 ± 0.1 Mg) supply to the adjacent coastal waters.

The role of earthworms in soil carbon dynamics is a recent avenue of research which is less studied in India. Three plots of 1 m 3 size were laid in Jeevaka live laboratory (JLL)- a biodiversity rich area within the University campus. A control plot (CP) of same dimension was maintained outside JLL. Out of three plots within JLL, one was operated with native earthworm Perionyx ceylanensisMichaelson (100 numbers), water and cattle dung as feed (Jeevaka test plot- JT) and fenced with nylon mesh. Remaining two plots were operated as controls within JLL (JC1 and JC2). JC1 (Jeevaka control 1) was provided with cattle dung and water, while JC2 and CP (outside JLL) were operated without any supplements. Throughout the experiment native earthworm species have maintained their dominancy in all plots except CP where no earthworms were observed. At the end of a year-long study, JC1 with maximum diversity of earthworms showed better soil organic carbon (SOC) and particulate organic carbon (POC)-which is relatively a stable form of SOC. Overall findings indicate better the diversity of earthworms better is the carbon storage in the soil.

The role of soil organic carbon in global carbon cycles is receiving increasing attention both as a potentially large and uncertain source of CO 2 emissions in response to predicted global temperature rises, and as a natural sink for carbon able to reduce atmospheric CO 2 . There is general agreement that the technical potential for sequestration of carbon in soil is significant, and some consensus on the magnitude of that potential. Croplands worldwide could sequester between 0.90 and 1.85 Pg C/yr, i.e. 26-53% of the target of the "4p1000 Initiative: Soils for Food Security and Climate". The importance of intensively cultivated regions such as North America, Europe, India and intensively cultivated areas in Africa, such as Ethiopia, is highlighted. Soil carbon sequestration and the conservation of existing soil carbon stocks, given its multiple benefits including improved food production, is an important mitigation pathway to achieve the less than 2 °C global target of the Paris Climate Agreement.

Arsenic (As) mobilization in alluvial aquifers is caused by a complex interplay of hydro-geo-microbiological activities. Nevertheless, diversity and biogeochemical significance of indigenous bacteria in Bengal Delta Plain are not well documented. We have deciphered bacterial community compositions and metabolic properties in As contaminated groundwater of West Bengal to define their role in As mobilization. Groundwater samples showed characteristic high As, low organic carbon and reducing property. Culture-independent and -dependent analyses revealed presence of diverse, yet near consistent community composition mostly represented by genera Pseudomonas, Flavobacterium, Brevundimonas, Polaromonas, Rhodococcus, Methyloversatilis and Methylotenera. Along with As-resistance and -reductase activities, abilities to metabolize a wide range carbon substrates including long chain and polyaromatic hydrocarbons and HCO3, As3+ as electron donor and As5+/Fe3+ as terminal electron acceptor during anaerobic growth were frequently observed within the cultivable bacteria. Genes encoding cytosolic As5+ reductase (arsC) and As3+ efflux/transporter [arsB and acr3(2)] were found to be more abundant than the dissimilatory As5+ reductase gene arrA. The observed metabolic characteristics showed a good agreement with the same derived from phylogenetic lineages of constituent populations. Selected bacterial strains incubated anaerobically over 300 days using natural orange sand of Pleistocene aquifer showed release of soluble As mostly as As3+ along with several other elements (Al, Fe, Mn, K, etc.). Together with the production of oxalic acid within the biotic microcosms, change in sediment composition and mineralogy indicated dissolution of orange sand coupled with As/Fe reduction. Presence of arsC gene, As5+ reductase activity and oxalic acid production by the bacteria were found to be closely related to their ability to mobilize sediment bound As. Overall observations suggest that indigenous bacteria in oligotrophic groundwater possess adequate catabolic ability to mobilize As by a cascade of reactions, mostly linked to bacterial necessity for essential nutrients and detoxification.

A bacterial isolate capable of utilizing tributyltin chloride (TBTCl) as sole carbon source was isolated from estuarine sediments of west coast of India and identified as Pseudomonas stutzeri based on biochemical tests and Fatty acid methyl ester (FAME) analysis. This isolate was designated as strain DN2. Although this bacterial isolate could resist up to 3 mM TBTCl level, it showed maximum growth at 2 mM TBTCl in mineral salt medium (MSM). Pseudomonas stutzeri DN2 exposed to 2 mM TBTCl revealed significant alteration in cell morphology as elongation and shrinkage in cell size along with roughness of cell surface. FTIR and NMR analysis of TBTCl degradation product extracted using chloroform and purified using column chromatography clearly revealed biotransformation of TBTCl into Dibutyltin dichloride (DBTCl₂) through debutylation process. Therefore, Pseudomonas stutzeri strain DN2 may be used as a potential bacterial strain for bioremediation of TBTCl contaminated aquatic environmental sites.

Low cost treatment of polluted wastewater has become a serious challenge in most of the urban areas of developing countries. The present study was undertaken to investigate the potential of Canna lily towards removal of carbon, nitrogen, and phosphorus from wastewater under sub-tropical conditions. A constructed wetland (CW) cell supporting vegetative layer of Canna lily was used to treat wastewater having high strength of CNP. Removal of biological oxygen demand (BOD3) and chemical oxygen demand (COD) varied between 69.8-96.4% and 63.6-99.1%, respectively. C. lily could efficiently remove carbon from a difficult to degrade wastewater at COD:BOD ratio of 24.4. Simultaneous reduction in TKN and nitrate pointed to good nitrification rates, and efficient plant assimilation as the dominant nutrient removal mechanism in the present study. Suitable Indian agro-climatic conditions favored plant growth and no evident stress over the Canna plant was observed. High removal rate of 809.8 mg/m(2)-day for TKN, 15.0 mg/m(2)-day for nitrate, and 164.2 mg/m(2)-day for phosphate suggests for a possible use of Canna-based CW for wastewater treatment for small, rural, and remote Indian communities.

The indigenous fungal flora of three oil refinery contaminated sites (Bharuch, Valsad and Vadodara) of India has been documented in the present investigation. A total seventy-five fungal morphotypes were isolated from these sites and out of them, only fifteen isolates were capable of utilizing ethanol (0-8%; v:v) as a sole source of carbon and energy for growth. Ten percent ethanol was completely lethal for the growth of all the isolated fungus. Biochemical characterization of the potent ethanol utilizing fungal isolates was studied based on substrate utilization profiles using BIOLOG phenotype microarray plates. Based on the morphological characters and Internal Transcribed Spacer region of ribosomal DNA, the fungal isolates were identified as Fusarium brachygibbosum, Fusarium equiseti, Fusarium acuminatum, Pencillium citrinum, Alternaria tenuissima, Septogloeum mori, Hypocrea lixii, Aureobasidium sp., Penicillium sp., and Fusarium sp. Intra-species genetic diversity among Fusarium sp. was evaluated by whole genome analysis with repetitive DNA sequences (ERIC, REP and BOX) based DNA fingerprinting. It was found that these fungus use alcohol dehydrogenase and acetaldehyde dehydrogenase enzymes based metabolism pathway to utilize ethanol for their growth and colonization.

Temporal and spatial variations in Synechococcus abundance were investigated over an annual cycle (February'10-January'11) along a salinity gradient (0-35) in the tropical Zuari estuary, influenced by south-west monsoons. Synechococcus exhibited salinity preferences with phycoerythrin-rich cells at salinities >2 (Synechococcus-PEI), >20 (Synechococcus-PEII) and <1 (Synechococcus-PEIII) whereas phycocyanin-rich (Synechococcus-PC) dominant at lower salinities. Downstream stratification during monsoon caused Synechococcus group segregation in the surface and near-bottom waters. During monsoon-break and non-monsoon period stabilized waters, increased salinity, temperature, solar radiation and low rainfall favored high Synechococcus abundance whereas unstable waters, increased turbidity and low solar radiation during active monsoon lowered abundance. SYN-PC positively co-related with nitrate and phosphate and SYN-PEI with phosphate. Synechococcus contribution to phytoplankton carbon biomass ranged from 9 to 29%. In monsoonal estuaries, rainfall intensity regulates freshwater runoff which modulates the estuarine environment, creating temporal-spatial niche segregation of Synechococcus groups thereby serving as indicator organisms of the estuarine hydrodynamics., (Copyright © 2013 Elsevier Ltd. All rights reserved.)

The objective of this study was to identify the most promising nutritional mode of growth for enhanced biomass and lipid productivity in a set of twenty microalgal strains, grown under photoautotrophic and mixotrophic/heterotrophic conditions using 2% glucose as carbon source. These included four cyanobacterial strains (Cyanosarcina, Phormidium, Nostoc and Anabaena) and sixteen green algae belonging to six genera (five strains each of Chlorella and Chlorococcum, two of Scenedesmus and one each of Chlamydomonas, Kirchneria, Bracteacoccus and Ulothrix). Lipid productivity ranged from 2-13% under photoautotrophic conditions, 1.7-32% under mixotrophic conditions and 0.9-20% under heterotrophic conditions. MIC-G5 Chlorella sp. followed by MIC-G11 Chlorella sp. exhibited the highest cellular lipid content (355 and 271 μg/ml) and lipid productivity of 32% and 28% respectively in mixotrophic condition. In the glucose supplemented conditions (heterotrophic), a significant reduction in PUFA from 25.1 to 9.4, 29.2 to 12.4 and 44.7 to 10.2 was observed in MIC-G4, MIC-G5 and MIC-G11, respectively. A remarkable enhancement of 33-70% in SFA was recorded under mixotrophic conditions. As the quality of biodiesel is based on high SFA and low PUFA, our results illustrate the significance of glucose supplemented condition as a promising strategy for generating high value biodiesel from algae., (© 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

The burden of chronic noncommunicable diseases (NCDs) such as diabetes, obesity and cardiovascular disease is shifting rapidly to low- and middle-income countries. It calls for a review of the classic 'dogma' of genetic predisposition, precipitated by adult lifestyle. The paradigm of early life origins of chronic disease has focused attention on maternal health and nutrition as major determinants of the health of the offspring. India has high burden of maternal ill health and also of diabetes and cardiovascular disease, offering unique opportunities to study the links between the two. Pune studies showed that the Indian babies were thin but fat (more adipose) compared to European babies, and that maternal micronutrient status during pregnancy was a determinant of offspring size and body composition. Two thirds of the mothers had low vitamin B12 concentrations, while folate deficiency was rare. Higher circulating concentrations of homocysteine predicted smaller baby size. Follow-up studies revealed that higher maternal folate in pregnancy predicted higher adiposity and insulin resistance in the child at 6 years of age, and that low maternal vitamin B12 exaggerated the risk of insulin resistance. Low maternal vitamin B12 status is also associated with increased risk of neural tube defects and poor offspring cognitive functions. Our results suggest an important role for maternal one-carbon metabolism in offspring growth and programming of NCD risk. These ideas are supported by animal studies. Improvement of adolescent nutrition could effect intergenerational prevention of chronic diseases., (Copyright © 2013 Nestec Ltd., Vevey/S. Karger AG, Basel.)

In the present investigation Thalassospira frigidphilosprofundus, a novel species from the deep waters of the Bay of Bengal, was explored for the production of cold-active β-galactosidase by submerged fermentation using marine broth medium as the basal medium. Effects of various medium constituents, namely, carbon, nitrogen source, pH, and temperature, were investigated using a conventional one-factor-at-a-time method. It was found that lactose, yeast extract, and bactopeptones are the most influential components for β-galactosidase production. Under optimal conditions, the production of β-galactosidase was found to be 3,864 U/mL at 20 ± 2°C, pH 6.5 ± 0.2, after 48 hr of incubation. β-Galactosidase production was further optimized by the Taguchi orthogonal array design of experiments and the central composite rotatable design (CCRD) of response surface methodology. Under optimal experimental conditions the cold-active β-galactosidase enzyme production from Thalassospira frigidphilosprofundus was enhanced from 3,864 U/mL to 10,657 U/mL, which is almost three times higher than the cold-active β-galactosidase production from the well-reported psychrophile Pseudoalteromonas haloplanktis.

Arsenite-tolerant bacteria were isolated from an organic farm of Navsari Agricultural University (NAU), Gujarat, India (Latitude: 20°55'39.04″N; Longitude: 72°54'6.34″E). One of the isolates, NAU-1 (aerobic, Gram-positive, non-motile, coccobacilli), was hyper-tolerant to arsenite (As(III), 23 mM) and arsenate (As(V), 180 mM). 16S rRNA gene of NAU-1 was 99% similar to the 16S rRNA genes of Rhodococcus (Accession No. HQ659188). Assays confirmed the presence of membrane bound arsenite oxidase and cytoplasmic arsenate reductase in NAU-1. Genes for arsenite transporters (arsB and ACR3(1)) and arsenite oxidase gene (aoxB) were confirmed by PCR. Arsenite oxidation and arsenite efflux genes help the bacteria to tolerate arsenite. Specific activities of antioxidant enzymes (catalase, ascorbate peroxidase, superoxide dismutase and glutathione S-transferase) increased in dose-dependent manner with arsenite, whereas glutathione reductase activity decreased with increase in As(III) concentration. Metabolic studies revealed that Rhodococcus NAU-1 produces excess of gluconic and succinic acids, and also activities of glucose dehydrogenase, phosphoenol pyruvate carboxylase and isocitrate lyase were increased, to cope with the inhibited activities of glucose-6-phosphate dehydrogenase, pyruvate dehydrogenase and α-ketoglutarate dehydrogenase enzymes respectively, in the presence of As(III). Enzyme assays revealed the increase in direct oxidative and glyoxylate pathway in Rhodococcus NAU-1 in the presence of As(III)., (© 2012 The Authors. Microbial Biotechnology © 2012 Society for Applied Microbiology and Blackwell Publishing Ltd.)

The Fabaceae tree Butea monosperma (TAUB.; syn. Erythrina monosperma (LAM.)) is widely distributed in Central and West-India. We studied it at three sites, i.e. at two locations with contrasting exposure (NE and SW, respectively) in a small mountain range with poor soil on highly drained rocky slopes and at a third location in a plane with deeper soils and better water supply. The two mountain range sites differed in the light climate where the NE-slope obtained more day-integrated irradiance. Chlorophyll fluorescence was measured with a portable fluorometer and leaf samples for stable isotope analyses (δ(13)C, δ(15)N, δ(18)O) were collected. No differences were seen in carbon and nitrogen contents of leaves at the three sites. N and O isotope signatures of the leaves were similar at the two rocky hill slope sites. More positive values for both signatures were obtained in the leaves in the plane. For all sites saturation of ETR was only achieved well above a PPFD of 1,000 μmol m(-2) s(-1) indicating that the leaves were sun-type leaves. The photosynthetic performance of Butea at the plane was very similar to that at the SW-slope of the mountain range and higher ETRs were obtained at the NE-slope. Ecophysiological flexibility allows Butea to perform well in a variety of habitats and yet gives it particular fitness at specific sites. The best performance was observed in the highly insolated steep rocky hill site (NE-slope) underlining the suitability of the tree for reforestation.

India is world's capital for low birth weight (LBW), which is ascribed to intrauterine growth restriction (IUGR) rather than prematurity. An average Indian mother is short and thin and gives birth to a light and thin baby. Maternal undernutrition is thought to be a major factor in the aetiology of IUGR, and the undernutrition is usually thought to be a low macronutrient intake. The Pune Maternal Nutrition Study (PMNS) showed that the Indian babies were thin but fat (more adipose) compared to European babies, and that maternal intake of micronutrient-rich foods was a strong determinant of fetal size. Two thirds of the mothers had low vitamin B(12) concentrations, folate deficiency was rare, and high circulating concentrations of homocysteine predicted IUGR. Follow up of these children revealed that higher maternal folate in pregnancy predicted higher adiposity and insulin resistance at 6 years of age. The most insulin resistant children were born to mothers who were vitamin B(12) deficient and had high folate concentrations. Thus, PMNS suggests an important role for maternal one-carbon (1C) metabolism in fetal growth and programming of diabetes risk. This could be due to the role of 1C metabolism in synthesis of nucleic acids, genomic stability and the epigenetic regulation of gene function. In addition, methionine has important role in protein synthesis. These ideas are supported by animal studies. The next logical step in India will be to improve 1C metabolism in adolescents to effect intergenerational prevention of adiposity, diabetes and other related conditions.

Strain AK12(T), an orange pigmented Gram-negative, rod shaped, non-motile bacterium, was isolated from a mud sample collected from a brackish water pond at Rampur of West Bengal, India. The strain was positive for oxidase, catalase and phosphatase. The predominant fatty acids were iso-C(15:0) (42.7%), iso-C(17:0) 3OH (13.2%), C(16:1ω7c)/C(16:1ω6c) (summed feature 3) (8.0%), iso-C(17:1) I/anteiso-C(17:1) B (summed feature 4) (6.1%) and iso-C(17:1ω9c)/C(16:0) 10-methyl (summed feature 9) (9.4%). Strain AK12(T) contained MK-7 as the major respiratory quinone and phosphatidylethanolamine, one unidentified aminophospholipid and six unidentified lipids as the polar lipids. The G + C content of DNA of the strain AK12(T) was 46.2 mol%. The 16S rRNA gene sequence analysis indicated that strain AK12(T) was member of the genus Echinicola and closely related to Echinicola vietnamensis, Echinicola pacifica and Echinicola jeungdonensis with pair-wise sequence similarity of 96.8, 96.3 and 96.0% respectively. Phylogenetic analyses indicated that the strain AK12(T) clustered with E. vietnamensis and together with E. pacifica and E. jeungdonensis with a phylogenetic distance of 5.1, 6.3 and 6.6% (94.9, 93.7 and 93.4% similarity) respectively. Based on data from the current polyphasic study, strain AK12(T) is proposed as a novel species of the genus Echinicola, for which the name Echinicola shivajiensis sp. nov. is proposed. The type strain of E. shivajiensis is AK12(T) (= MTCC 11083(T) = JCM 17847(T)).

A Psychrotolerant alkaline protease producing bacterium IIIM-ST045 was isolated from a soil sample collected from the Thajiwas glacier of Kashmir, India and identified as Stenotrophomonas sp. on the basis of its biochemical properties and 16S ribosomal gene sequencing. The strain could grow well within a temperature range of 4-37°C however, showed optimum growth at 15°C. The strain was found to over-produce proteases when it was grown in media containing lactose as carbon source (157.50 U mg(-1)). The maximum specific enzyme activity (398 U mg(-1)) was obtained using soya oil as nitrogen source, however, the inorganic nitrogen sources urea, ammonium chloride and ammonium sulphate showed the lowest production of 38.9, 62.2 and 57.9 U mg(-1). The enzyme was purified to 18.45 folds and the molecular weight of the partially purified protease was estimated to be ~55 kDa by SDS-PAGE analysis. The protease activity increased as the increase in enzyme concentration while as the optimum enzyme activity was found when casein (1% w/v) was used as substrate. The enzyme was highly active over a wide range of pH from 6.5 to 12.0 showing optimum activity at pH 10.0. The optimum temperature for the enzyme was 15°C. Proteolytic activity reduced gradually with higher temperatures with a decrease of 56% at 40°C. The purified enzyme was checked for the removal of protein containing tea stains using a silk cloth within a temperature range of 10-60°C. The best washing efficiency results obtained at low temperatures indicate that the enzyme may be used for cold washing purposes of delicate fabrics that otherwise are vulnerable to high temperatures.

In India the exotic epigeic species, Eisenia fetida is mostly used for vermicomposting. The introduction of exotic species into local bio system may affect the indigenous earthworm species population. A comparative study between exotic species (Eisenia fetida) and indigenous species Perionyx sansibaricus and Perionyx excavates was performed to determine the potential of indigenous species of the area vis-à-vis the exotic species for composting of domestic organic waste blended with cattle manure. The results of the study show a significant reduction in initial C/N ratio from 55 to 13 for P. excavates and 15 for P. sansibaricus of the ready product which was within the agronomic acceptable limit ( < 20). The total organic matter reduced by 50% and pH also reduced to be nearer to neutral, but there was an increase in total nitrogen to 102% and total phosphorus increased from the initial concentration of 7.62 g kg(-1) up to 13.2 g kg(-1). Overall, by employing above indigenous species, domestic organic waste can be directly converted into high-quality hygienic stable fertilizer (vermicompost) which is rich in nitrogen, phosphorus and potassium and free from pathogens.

A pink, aerobic, facultatively methylotrophic, motile, Gram-negative rod, designated Gh-105(T), was isolated from the phyllosphere of cotton from Coimbatore (Tamilnadu, India). 16S rRNA gene sequence analysis showed clearly that the isolate belonged to the Methylobacterium cluster. Strain Gh-105(T) was most closely related to Methylobacterium adhaesivum AR27(T) (99% 16S rRNA gene sequence similarity) and Methylobacterium iners 5317S-33(T) (97.5%). The isolate grew with C(1) compounds such as methanol and dichloromethane, but not with formaldehyde, formate, methylamine, trimethylamine or methane, as sole carbon sources and carried mxaF, which encodes methanol dehydrogenase and supports methylotrophic metabolism. The major fatty acid was C(18:1)ω7c and the G+C content of the genomic DNA was 64.2 mol%. Physiological and biochemical data and DNA-DNA relatedness with M. adhaesivum KACC 12195(T) and M. iners KACC 11765(T) revealed clear phenotypic and genotypic differences. For this reason, we propose that strain Gh-105(T) (=CCM 7572(T) =NRRL B-51692(T)) represents the type strain of a novel species, with the name Methylobacterium gossipiicola sp. nov.

Aspergillus sp. (MTCC 5436), isolated from contaminated clarified butter was used as a whole cell catalyst for transesterification of oils from different sources. The strain was observed to be tolerant and grow in 90% oil as carbon source. Oils of Jathropa, karanj and spent cottonseed were used as carbon sources in the study. The product, alkyl ester, was characterized and quantified using (1) H-NMR. The strain was observed to facilitate transesterification in an oil:minimal medium with the ratio of 70:30 resulting in a 98% conversion of oil to ethyl esters within 48 h at 28 °C and 120 rpm. The physico-chemical characteristics of the ethyl ester (>98%) at 70% oil as carbon source were similar to the standards specified for biodiesel as per standards of American Society for Testing and Materials (ASTM) and Bureau of Indian Standards (BIS), India., (Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Effluent generated from coal carbonization to coke was characterized with high organic content, phenols, ammonium nitrogen, and cyanides. A full scale effluent treatment plant (ETP) working on the principle of single stage carbon-nitrogen bio-oxidation process (SSCNBP) revealed competition between heterotrophic and autotrophic bacteria in the bio-degradation and nitrification process. The effluent was pretreated in a stripper and further combined with other streams to treat in the SSCNBP. Laboratory studies were carried on process and stripped effluents in a bench scale model of ammonia stripper and a two stage bio-oxidation process. The free ammonia removal efficiency of stripper was in the range 70-89%. Bench scale studies of the two stage bio-oxidation process achieved a carbon-nitrogen reduction at 6 days hydraulic retention time (HRT) operating in an extended aeration mode. This paper addresses the studies on selection of a treatment process for removal of organic matter, phenols, cyanide and ammonia nitrogen. The treatment scheme comprising ammonia stripping (pretreatment) followed by the two stage bio-oxidation and chlorination process met the Indian Standards for discharge into Inland Surface Waters. This treatment process package offers a techno-economically viable treatment scheme to neuter hazardous effluent generated from coal carbonization process., (Copyright © 2011 Elsevier B.V. All rights reserved.)

Methyl violet, used extensively in the commercial textile industry and as a biological stain, is a hazardous recalcitrant. Aspergillus sp. strain CB-TKL-1 isolated from a water sample from Tsumoriri Lake, Karzok, Ladakh, India, was found to completely decolorize methyl violet within 24 h when cultured under aerobic conditions at 25 degrees C. The rate of decolorization was determined by monitoring the decrease in the absorbance maxima of the dye by UV-visible spectroscopy. The decolorization of methyl violet was optimal at pH 5.5 and 30 degrees C when agitated at 200 rpm. Addition of glucose or arabinose (2%) as a carbon source and sodium nitrate or soyapeptone (0.2%) as a nitrogen source enhanced the decolorization ability of the culture. Furthermore, the culture exhibited a maximum decolorization rate of methyl violet after 24 h when the C:N ratio was 10. Nine N-demethylated decolorized products of methyl violet were identified based on UV-visible spectroscopy, Fourier transform infrared (FTIR), and LC-MS analyses. The decolorization of methyl violet at the end of 24 h generated mono-, di-, tri-, tetra-, penta-, and hexa-Ndemethylated intermediates of pararosaniline. The variation of the relative absorption peaks in the decolorized sample indicated a linear decrease of hexa-N-demethylated compounds to non-N-demethylated pararosaniline, indicating a stepwise N-demethylation in the decolorization process.

The molecular diversity of aerobic endospore-forming bacteria, typically Bacillus and its derived genera, has been investigated in various environments. However, there have been few investigations concerning Bacillus in acidic soils. In this study, the genotypic diversity and phylogenetic relationships among plant growth-promoting (PGP) bacilli isolated from the rice rhizosphere growing in acidic soils of Kerala (pH varying from 6.3 to 6.8) were investigated. For assessing their biocontrol potential and PGP attributes, 115 isolates were randomly selected and 49 isolates that were positive for multiple traits were selected. Metabolic characterization of representative strains, using the Biolog GP2 (Gram Positive) MicroPlate(TM) , revealed a large versatility with respect to carbohydrate utilization. Amplified ribosomal DNA restriction analysis revealed 13 clusters at 65% similarity level, which consisted of 1-21 strains. 16S rDNA partial sequencing assigned all the isolates, except for one, to the Bacillus genus, with close relatedness to Bacillus humi, B. megaterium, B. drentensis, B. pocheonensis, B. aestuarii, B. arbutinivorans, B. niacini, and Brevibacterium casei. The Bacillus species with different metabolic capabilities, PGP abilities, and genetic diversity found in this study are likely to have ecological relevance., (Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

In this experiment, different microorganisms viz., Trichoderma viridae, Aspergillus niger and Bacillus megaterium were inoculated in bagasse and coir with the objective to study their effect on nutrient dynamics and microbial properties, specially effect on fungal status in these waste materials. Fungal biomass (FBC) was calculated from the ergosterol content in the vermicompost samples. Inoculation of B. megaterium registered comparatively higher TP content in the final stabilized product. Vermicomposting increased microbial biomass carbon (MBC) and nitrogen (MBN) content in bagasse and coir. Microbial biomass carbon to nitrogen ratio (MBC/ MBN) was comparatively narrower in fungi inoculated vermicomposts and FBC/MBC ratio was increased up to 11.69 from 9.51 of control during vermicomposting., (Copyright (c) 2010 Elsevier Ltd. All rights reserved.)

In India, millions of tons of press mud (PM) are generated by sugar mills every year. This paper reports the potential of vermitechnology to convert sugar industry waste PM mixed with cow dung (CD) into vermicompost, employing an epigeic earthworm Eisenia fetida. A total of six different reactors were established having different ratios of PM and CD including one control (CD only). The growth and fecundity of E. fetida was monitored for 13 weeks. Maximum growth was recorded in 100% CD, but earthworms grew and reproduced favourably up to 1:1 PM and CD feed composition. However, greater percentages of PM in different reactors significantly affected the growth and fecundity of worms. Vermicomposting resulted in a decrease in carbon concentration and an increase in nitrogen, phosphorus and calcium concentrations of the vermicompost. Investigations indicated that vermicomposting could be an alternative technology for the management of PM into useful fertilizing material, if mixed at maximum 50% with CD.

Five fungal isolates were screened for the production of alpha-amylase using both solid-state and submerged fermentations. The best amylase producer among them, Aspergillus niger JGI 24, was selected for enzyme production by solid-state fermentation (SSF) on wheat bran. Different carbon and nitrogen supplements were used to enhance enzyme production and maximum amount of enzyme was obtained when SSF was carried out with soluble starch and beef extract (1% each) as supplements. Further attempts to enhance enzyme production by UV induced mutagenesis were carried out. Survival rate decreased with increase in duration of UV exposure. Partial purification of the enzyme using ammonium sulphate fractionation resulted in 1.49 fold increase in the enzyme activity. The enzyme showed a molecular weight of 43 kDa by SDS-PAGE. Metal ions Ca2+ and Co2+ increased the enzyme activity. The enzyme was optimally active at 30 degrees C and pH 9.5.

The diversity population of microorganisms with the capability to use selenate as a terminal electron acceptor, reducing it to selenite and elemental selenium by the process known as dissimilatory selenate reduction, is largely unknown. The overall objective of this study was to gain an in-depth understanding of anaerobic biotransformation of selenium in the environment, particularly anaerobic respiration, and to characterize the microorganisms catalyzing this process. Here, we demonstrate the isolation and characterization of four novel anaerobic dissimilatory selenate-respiring bacteria enriched from a variety of sources, including sediments from three different water bodies in Chennai, India, and a tidal estuary in New Jersey. Strains S5 and S7 from India, strain KM from the Meadowlands, NJ, and strain pn1, categorized as a laboratory contaminant, were all phylogenetically distinct, belonging to various phyla in the bacterial domain. The 16S rRNA gene sequence shows that strain S5 constitutes a new genus belonging to Chrysiogenetes, while strain S7 belongs to the Deferribacteres, with greater than 98% 16S rRNA gene similarity to Geovibrio ferrireducens. Strain KM is related to Malonomonas rubra, Pelobacter acidigallici, and Desulfuromusa spp., with 96 to 97% 16S rRNA gene similarity. Strain pn1 is 99% similar to Pseudomonas stutzeri. Strains S5, S7, and KM are obligately anaerobic selenate-respiring microorganisms, while strain pn1 is facultatively anaerobic. Besides respiring selenate, all these strains also respire nitrate.

A pink-pigmented, phototrophic, purple nonsulfur bacterium, strain JA173(T), was isolated in pure culture from a saltern in Gokarna, India, in a medium containing 2 % (w/v) NaCl. Strain JA173(T) was a non-motile Gram-negative rod that multiplied by budding. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain JA173(T) clusters with the class Alphaproteobacteria; highest sequence similarity (98 %) was to the type strain of Rhodobium orientis and 94 % similarity was observed to the 16S rRNA gene sequence of the type strain of Rhodobium marinum. However, DNA-DNA hybridization with R. orientis DSM 11290(T) revealed a relatedness value of only 35.1 % with strain JA173(T). Strain JA173(T) contained lamellar internal membranes, bacteriochlorophyll a and carotenoids of the spirilloxanthin series. Strain JA173(T) had an obligate requirement for NaCl (optimum growth at 2-6 %, w/v) and grew photoheterotrophically with a number of organic compounds as carbon source or electron donor. Photoautotrophic, chemoautotrophic and fermentative growth could not be demonstrated. Yeast extract was required for growth. Based on 16S rRNA gene sequence analysis, DNA-DNA hybridization data and morphological and physiological characteristics, strain JA173(T) is sufficiently different from other species of the genus Rhodobium to be recognized as a representative of a novel species, Rhodobium gokarnense sp. nov. The type strain is JA173(T) (=ATCC BAA-1215(T)=DSM 17935(T)=JCM 13532(T)).

Study on active and labile carbon-pools can serve as a clue for soil organic carbon dynamics on exposure to elevated level of CO2. Therefore, an experimental study was conducted in a Typic Haplustept in sub-tropical semi-arid India with wheat grown in open top chambers at ambient (370 micromol mol-1) and elevated (600 micromol mol-1) concentrations of atmospheric CO2. Elevated atmospheric CO2 caused increase in yield and carbon uptake by all plant parts, and their preferential partitioning to root. Increases in fresh root weight, volume and length have also been observed. Relative contribution of medium-sized root to total root length increased at the expense of very fine roots at elevated CO2 level. All active carbon-fractions gained due to elevated atmospheric CO2 concentration, and the order followed their relative labilities. All the C-pools have recorded a significant increase over initial status, and are expected to impart short-to-medium-term effect on soil carbon sequestration.

A bacterial isolate obtained from soil from a municipal landfill site in India was characterized using a polyphasic taxonomic approach. The colonies of the isolate were found to be yellow and highly mucoid. Comparative analysis of the 16S rRNA gene sequence showed that this isolate constitutes a distinct phyletic line within the genus Lysobacter, displaying >3 % sequence divergence with respect to recognized Lysobacter species. The generic assignment was confirmed by chemotaxonomic data, which revealed the presence of a fatty acid profile characteristic of members of the genus Lysobacter and consisting of saturated, unsaturated, straight-chain and branched-chain fatty acids as well as iso-C(11 : 0) 3-OH as hydroxylated fatty acid, and the presence of an ubiquinone with eight isoprene units (Q-8) as the predominant respiratory quinone. The genotypic and phenotypic data show that strain IMMIB APB-9(T) merits classification as representing a novel species of the genus Lysobacter, for which the name Lysobacter defluvii sp. nov. is proposed. The type strain is IMMIB APB-9(T) (=CCUG 53152(T)=DSM 18482(T)).

Studies were carried out on the production of pectinases using deseeded sunflower head by Aspergillus niger DMF 27 and DMF 45 in submerged fermentation (SmF) and solid-state fermentation (SSF). Higher titres of endo- and exo-pectinases were observed when medium was supplemented with carbon (4% glucose for SmF and 6% sucrose for SSF) and nitrogen (ammonium sulphate, 0.3% for both SmF and SSF) sources. Green gram husk proved to be relatively a better supplement to attain higher yield of endo-pectinase (11.7 U/g) and exo-pectinase (30.0 U/g) in solid-state conditions. Maximum production of endo-pectinase (19.8 U/g) and exo-pectinase (45.9 U/g) by DMF 45 were recorded in SSF when compared to endo-pectinase (18.9 U/ml) and exo-pectinase (30.3 U/ml) by DMF 27 in SmF under optimum process conditions.

Bacterial growth efficiency (BGE) is an index of organic carbon passing through bacteria in an aquatic system. BGE values of natural bacterioplankton assemblages were measured in tropical estuarine and adjacent coastal waters in Goa along the southwest coast of India. The BGE values for estuarine and coastal waters were 18 (+/-7.84%) and 11 (+/-4.19%), respectively. BGE in these waters were at the lower end of what is usually found in productive systems. This may be due to the high respiration rates. Further, it was observed that grazers also influenced BGE. As BGE was positively correlated with bacterial productivity, the observed variation in BGE was attributed to bacterial productivity. BGE was inversely related to C:N ratio, indicating a close coupling between the nature of the substrates and BGE. Being system-dependent, the variations in BGE at the two locations were dynamic and were regulated by the quality of the substrates. Therefore, a constant value for BGE would lead to error in carbon budgets in these waters.

Alkaliphilic bacteria belonging to the genera Bacillus, Staphylococcus, Micrococcus, Pseudomonas and Arthrobacter isolated from sediment samples of the alkaline Lonar lake situated in the Buldhana District of Maharashtra State, India, were studied for the production of protease activity. Among the 54 isolates obtained, Arthrobacter ramosus and Bacillus alcalophilus exhibited high protease activity using soyacake as a sole source of carbon and nitrogen. Protease activity was optimum at 1% initial substrate concentration, at 30 degrees C and under shake culture condition for both organisms. The enzyme was thermostable (65 degrees C), stable at pH 12 and also active in the presence of commercial detergent. This enzyme removed blood stains from cotton fabric indicating its potential use in detergent formulations.

Soil amended with different proportions of flyash, a solid waste generated from coal-fired thermal power plants, was evaluated as a soil conditioner and nutrient supplement during a field study on the growth of rice, Oryza sativa. Generally, pH and organic carbon (OC) content did not increase significantly (P > 0.05) in flyash amended soil, but significant increases (P < 0.05) in soil conductivity (32%), available phosphorus (48%) and organic matter (OM, 29%) were observed during harvest at the 20 t ha-1 flyash application rate. Amylase, invertase, dehydrogenase and protease activities, and CO2 evolution increased in flyash amended soil over the control. The pigment (chl-a, chl-b, and carotenoid) content in rice plants did not vary significantly (P > 0.05) between different flyash amendments. Total plants biomass and aboveground biomass increased (P < 0.05) significantly (17% and 25%, respectively) at the 20 t ha-1 flyash application. However, there was a retarded growth of underground biomass. Grain and straw yield increased by 21% and 18%, respectively, at 17.5 t ha-1 flyash amendment when compared to the control. Although, a significant increase (P < 0.05) in plant biomass and grain yield in flyash amended soil is encouraging from the point of waste disposal and management, elucidation of reasons for retarded growth in underground biomass will require additional research based on long-term studies.

The diversity of 16 strains of chickpea-infective rhizobia from various geographical origins was analysed using genotypic and phenotypic approaches. Multilocus enzyme electrophoresis was performed, and restriction fragment length polymorphisms of the amplified 16S + IGS (intergenic spacer) rRNA gene, assimilation of 147 carbon sources, antibiotic resistance, and tolerance to NaCl and extreme pH values and temperatures were tested. These approaches had different discriminating powers. Esterase polymorphisms gave a unique pattern for each strain, allowing this method to be used for strain fingerprinting. Genetic distances between strains were estimated. The three approaches used in this study yielded consistent results. They evidenced high heterogeneity among the strains, and made it possible to classify the strains into two clusters. Isozyme patterns for superoxide dismutase were particularly interesting, since they delineated the same two groups. The phenotypic tests clearly confirmed the existence of two genetic groups on the basis of 11 phenotypic characters. Owing to the large phylogenetic distance between the two groups of strains, the taxonomic status of chickpea-infective strains is discussed.

A new species of Streptoverticillium assignable to biverticillate series, isolated from coal mine soil, Kothagudem (A. P.) is described. It grows from pH 4.5-6.0 with an optimum at pH 5.0 and temperature 37 degrees C. Its growth characters on differential media and utilization of carbon compounds are presented.

The effect of lanthanum sulphate together with 100 micrometer of sodium molybdate show that there is considerable increase in nitrogen fixation and carbon consumption in the culture medium of nitrogen-fixing Azotobacter species A1 and A2, isolated from Allahabad soil. But these combination decrease the nitrogen fixation and carbon consumption in case of another species, Azotobacter A3, of the same soil.

The effect of ruthenium chloride in the culture media on the nitrogen-fixing ability of the three nitrogen fixers (unidentified species of Azotobacter, designated here as D3, B3, and B), isolated from Allahabad soil, was studied. It was observed that the nitrogen-fixing ability of the organisms is much increased in presence of 25-75 micro M concentration of ruthenium chloride in the culture media, while sugar consumption remains more or less steady. Also, if mg nitrogen fixed/g carbon consumed in two culture media with successive increasing concentrations of ruthenium chloride is compared by calculating the difference in increase of the amount of nitrogen fixed and carbon consumed in these two culture media, it was observed that high amounts of nitrogen are fixed by B3 and B between 25-50 micro M, and between 50-75 micro M concentration of ruthenium chloride by D3.