8 results on '"Oak Ridge Institute for Science and Education"'
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2. Spatial, environmental, and individual associations with Anopheles albimanus salivary antigen IgG in Haitian children.
- Author
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Jaramillo-Underwood A, Herman C, Impoinvil D, Sutcliff A, Knipes A, Worrell CM, Fox LM, Desir L, Fayette C, Javel A, Monestime F, Mace KE, Chang MA, Lemoine JF, Won K, Udhayakumar V, and Rogier E
- Subjects
- Male, Child, Female, Animals, Humans, Haiti, Mosquito Vectors, Black People, Immunoglobulin G, Anopheles
- Abstract
IgG serology can be utilized to estimate exposure to Anopheline malaria vectors and the Plasmodium species they transmit. A multiplex bead-based assay simultaneously detected IgG to Anopheles albimanus salivary gland extract (SGE) and four Plasmodium falciparum antigens (CSP, LSA-1, PfAMA1, and PfMSP1) in 11,541 children enrolled at 350 schools across Haiti in 2016. Logistic regression estimated odds of an above-median anti-SGE IgG response adjusting for individual- and environmental-level covariates. Spatial analysis detected statistically significant clusters of schools with students having high anti-SGE IgG levels, and spatial interpolation estimated anti-SGE IgG levels in unsampled locations. Boys had 11% (95% CI: 0.81, 0.98) lower odds of high anti-SGE IgG compared to girls, and children seropositive for PfMSP1 had 53% (95% CI: 1.17, 2.00) higher odds compared to PfMSP1 seronegatives. Compared to the lowest elevation, quartiles 2-4 of higher elevation were associated with successively lower odds (0.81, 0.43, and 0.34, respectively) of high anti-SGE IgG. Seven significant clusters of schools were detected in Haiti, while spatially interpolated results provided a comprehensive picture of anti-SGE IgG levels in the study area. Exposure to malaria vectors by IgG serology with SGE is a proxy to approximate vector biting in children and identify risk factors for vector exposure., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Jaramillo-Underwood, Herman, Impoinvil, Sutcliff, Knipes, Worrell, Fox, Desir, Fayette, Javel, Monestime, Mace, Chang, Lemoine, Won, Udhayakumar and Rogier.)
- Published
- 2022
- Full Text
- View/download PDF
3. Evaluation of a parasite-density based pooled targeted amplicon deep sequencing (TADS) method for molecular surveillance of Plasmodium falciparum drug resistance genes in Haiti.
- Author
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Louha S, Herman C, Gupta M, Patel D, Kelley J, Oh JM, Guru J, Lemoine JF, Chang MA, Venkatachalam U, Rogier E, and Talundzic E
- Subjects
- Animals, Antimalarials pharmacology, Dried Blood Spot Testing methods, Epidemiological Monitoring, Haiti, High-Throughput Nucleotide Sequencing methods, Humans, Malaria epidemiology, Malaria, Falciparum parasitology, Nucleic Acid Amplification Techniques methods, Parasites genetics, Plasmodium falciparum drug effects, Plasmodium falciparum pathogenicity, Polymerase Chain Reaction methods, Sequence Analysis, DNA, Drug Resistance genetics, High-Throughput Screening Assays methods, Plasmodium falciparum genetics
- Abstract
Sequencing large numbers of individual samples is often needed for countrywide antimalarial drug resistance surveillance. Pooling DNA from several individual samples is an alternative cost and time saving approach for providing allele frequency (AF) estimates at a population level. Using 100 individual patient DNA samples of dried blood spots from a 2017 nationwide drug resistance surveillance study in Haiti, we compared codon coverage of drug resistance-conferring mutations in four Plasmodium falciparum genes (crt, dhps, dhfr, and mdr1), for the same deep sequenced samples run individually and pooled. Samples with similar real-time PCR cycle threshold (Ct) values (+/- 1.0 Ct value) were combined with ten samples per pool. The sequencing success for samples in pools were higher at a lower parasite density than the individual samples sequence method. The median codon coverage for drug resistance-associated mutations in all four genes were greater than 3-fold higher in the pooled samples than in individual samples. The overall codon coverage distribution for pooled samples was wider than the individual samples. The sample pools with < 40 parasites/μL blood showed more discordance in AF calls for dhfr and mdr1 between the individual and pooled samples. This discordance in AF estimation may be due to low amounts of parasite DNA, which could lead to variable PCR amplification efficiencies. Grouping samples with an estimated ≥ 40 parasites/μL blood prior to pooling and deep sequencing yielded the expected population level AF. Pooling DNA samples based on estimates of > 40 parasites/μL prior to deep sequencing can be used for rapid genotyping of a large number of samples for these four genes and possibly other drug resistant markers in population-based studies. As Haiti is a low malaria transmission country with very few mixed infections and continued chloroquine sensitivity, the pooled sequencing approach can be used for routine national molecular surveillance of resistant parasites., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2022
- Full Text
- View/download PDF
4. Barriers to attendance of canine rabies vaccination campaigns in Haiti, 2017.
- Author
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Barbosa Costa G, Ludder F, Monroe B, Dilius P, Crowdis K, Blanton JD, Pieracci EG, Head JR, Gibson AD, and Wallace RM
- Subjects
- Adult, Aged, Aged, 80 and over, Animals, Cross-Sectional Studies, Dogs, Female, Haiti, Humans, Kaplan-Meier Estimate, Logistic Models, Male, Mass Vaccination psychology, Middle Aged, Rabies prevention & control, Young Adult, Dog Diseases prevention & control, Mass Vaccination veterinary, Rabies veterinary, Social Class
- Abstract
We conducted a cross-sectional survey to better understand the barriers to attendance at canine rabies vaccination campaigns in Haiti. A structured community-based questionnaire was conducted over a 15-day period during May-June 2017, focused on socio-economic status correlated with participation at canine rabies vaccination campaigns. Questions phrased as a bidding game were asked to determine individuals' willingness to pay (WTP) for dog rabies vaccination and willingness to walk (WTW) to fixed-point vaccination campaigns. The Kaplan-Meier estimator was applied to determine relationships between survey variables. Logistic regression was used to examine factors associated with participants' WTP and WTW. A total of 748 households from eight communities were surveyed. Respondents were predominantly female (54.4%) and had a median age of 45 years. The total number of owned dogs reported from households was 926, yielding a human-to-dog ratio in dog-owning households of 5.2:1. The majority of dogs (87.2%) were acquired for security, and 49% were allowed to roam freely; 42.0% of dog owners reported that they were unable to manage (or restrain) their dogs using a leash. Seventy per cent of dog owners were willing to pay up to 15.9 gourdes (0.25 USD) and/or walk up to 75 m to vaccinate their dogs. Households that owned free-roaming dogs, owned dogs for the purpose of companionship and owned dogs that they were unable to walk on a leash were associated with a higher WTP for vaccination. Living in Artibonite Department, having a middle or higher household income, and owning a dog for security purpose were associated with a higher WTW for vaccination. Low leash use and propensity for dogs to roam freely are barriers to successful fixed-point vaccination methods in Haiti, and alternative methods such as door to door (DD), capture-vaccinate-release (CVR) or oral vaccination should be explored. There may be some prospect for fee-for-service vaccination in Haiti; however, this programme should be introduced as a supplement, rather than a replacement for free rabies vaccination programmes so that mass dog vaccination is not discouraged., (© 2020 The Authors. Transboundary and Emerging Diseases published by Blackwell Verlag GmbH.)
- Published
- 2020
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5. Using the LN34 Pan-Lyssavirus Real-Time RT-PCR Assay for Rabies Diagnosis and Rapid Genetic Typing from Formalin-Fixed Human Brain Tissue.
- Author
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Condori RE, Niezgoda M, Lopez G, Matos CA, Mateo ED, Gigante C, Hartloge C, Filpo AP, Haim J, Satheshkumar PS, Petersen B, Wallace R, Olson V, and Li Y
- Subjects
- Child, Preschool, Dominican Republic, Fatal Outcome, Female, Formaldehyde, Haiti, Humans, Immunohistochemistry, Molecular Typing, RNA, Viral genetics, Rabies virology, Specimen Handling, Brain pathology, Brain virology, Lyssavirus genetics, Rabies diagnosis, Real-Time Polymerase Chain Reaction
- Abstract
Human rabies post mortem diagnostic samples are often preserved in formalin. While immunohistochemistry (IHC) has been routinely used for rabies antigen detection in formalin-fixed tissue, the formalin fixation process causes nucleic acid fragmentation that may affect PCR amplification. This study reports the diagnosis of rabies in an individual from the Dominican Republic using both IHC and the LN34 pan-lyssavirus real-time RT-PCR assay on formalin-fixed brain tissue. The LN34 assay generates a 165 bp amplicon and demonstrated higher sensitivity than traditional PCR. Multiple efforts to amplify nucleic acid fragments larger than 300 bp using conventional PCR were unsuccessful, probably due to RNA fragmentation. Sequences generated from the LN34 amplicon linked the case to the rabies virus (RABV) strain circulating in the Ouest Department of Haiti to the border region between Haiti and the Dominican Republic. Direct sequencing of the LN34 amplicon allowed rapid and low-cost rabies genetic typing.
- Published
- 2020
- Full Text
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6. Haiti Poliovirus Environmental Surveillance.
- Author
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Coulliette-Salmond AD, Alleman MM, Wilnique P, Rey-Benito G, Wright HB, Hecker JW, Miles S, Peñaranda S, Lafontant D, Corvil S, Francois J, Rossignol E, Stanislas M, Gue E, Faye PC, Castro CJ, Schmidt A, Ng TFF, Burns CC, and Vega E
- Subjects
- Disease Eradication, Filtration methods, Haiti epidemiology, High-Throughput Nucleotide Sequencing, Humans, Poliomyelitis prevention & control, Poliovirus genetics, Poliovirus Vaccine, Oral, Water Microbiology, Environmental Monitoring, Feces virology, Poliomyelitis epidemiology, Poliovirus isolation & purification, Sewage virology
- Abstract
Poliovirus (PV) environmental surveillance was established in Haiti in three sites each in Port-au-Prince and Gonaïves, where sewage and fecal-influenced environmental open water channel samples were collected monthly from March 2016 to February 2017. The primary objective was to monitor for the emergence of vaccine-derived polioviruses (VDPVs) and the importation and transmission of wild polioviruses (WPVs). A secondary objective was to compare two environmental sample processing methods, the gold standard two-phase separation method and a filter method (bag-mediated filtration system [BMFS]). In addition, non-polio enteroviruses (NPEVs) were characterized by next-generation sequencing using Illumina MiSeq to provide insight on surrogates for PVs. No WPVs or VDPVs were detected at any site with either concentration method. Sabin (vaccine) strain PV type 2 and Sabin strain PV type 1 were found in Port-au-Prince, in March and April samples, respectively. Non-polio enteroviruses were isolated in 75-100% and 0-58% of samples, by either processing method during the reporting period in Port-au-Prince and Gonaïves, respectively. Further analysis of 24 paired Port-au-Prince samples confirmed the detection of a human NPEV and echovirus types E-3, E-6, E-7, E-11, E-19, E-20, and E-29. The comparison of the BMFS filtration method to the two-phase separation method found no significant difference in sensitivity between the two methods (mid- P -value = 0.55). The experience of one calendar year of sampling has informed the appropriateness of the initially chosen sampling sites, importance of an adequate PV surrogate, and robustness of two processing methods.
- Published
- 2019
- Full Text
- View/download PDF
7. Prevalence of Chronic Hepatitis B Virus Infection among Children in Haiti, 2017.
- Author
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Childs L, Adrien P, Minta AA, François J, Phaïmyr Jn Charles N, Blot V, Rey-Benito G, Vanden Eng JL, and Tohme RA
- Subjects
- Adult, Caregivers, Child, Child, Preschool, Cross-Sectional Studies, Female, Haiti epidemiology, Hepatitis B Surface Antigens blood, Hepatitis B Vaccines administration & dosage, Hepatitis B, Chronic prevention & control, Humans, Male, Prevalence, Seroepidemiologic Studies, Socioeconomic Factors, Vaccination, Hepatitis B Vaccines immunology, Hepatitis B, Chronic epidemiology
- Abstract
In 2016, the World Health Assembly endorsed the Global Health Sector Strategy on Viral Hepatitis, which calls for elimination of hepatitis B virus (HBV) by 2030 (definition: ≤ 0.1% hepatitis B surface antigen [HBsAg] prevalence among children aged 5 years). The burden of chronic HBV infection among children in Haiti is unknown. We conducted a nationally representative cross-sectional serological survey among 5- to 7-year-old children based on a two-stage cluster design with two strata: West (includes metropolitan Port-au-Prince) and non-West (all other departments). We collected demographic, socioeconomic, and vaccination history data and tested for HBsAg using a rapid point-of-care test. We estimated HBsAg prevalence and evaluated the association of HBV infection with vaccination history, demographics, and socioeconomic characteristics. Of the 1,152 children, seven (0.5%, 95% CI: 0.2-1.2) were HBsAg positive. The HBsAg prevalence varied by region (West: 0.1%, 95% CI: 0.01-0.9; non-West: 0.7%, 95% CI: 0.2-1.9) ( P = 0.1), gender (males: 0.7%, 95% CI: 0.2-2.4; females: 0.2%, 95% CI: 0.05-1.1) ( P = 0.3), and caregiver's education level (none: 0.8%, 95% CI: 0.2-3.1; some or completed primary: 0.5%, 95% CI: 0.1-1.8; some secondary: 0.4%, 95% CI: 0.1-1.8; secondary and higher: 0.0%, 95% CI: 0-0), although the differences were not statistically significant. None of the HBsAg-positive children had documented vaccination with hepatitis B vaccine (HepB). Haiti's chronic HBV infection prevalence among children is low; however, it is above the elimination target. To reach elimination, Haiti needs to achieve high coverage with the three HepB doses and introduce a HepB birth dose.
- Published
- 2019
- Full Text
- View/download PDF
8. Seroprevalence of Hepatitis A and Hepatitis E Viruses among Pregnant Women in Haiti.
- Author
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Tejada-Strop A, Tohme RA, Andre-Alboth J, Childs L, Ji X, de Oliveira Landgraf de Castro V, Boncy J, and Kamili S
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- Adolescent, Adult, Antibodies, Viral blood, Female, Haiti epidemiology, Hepatitis A blood, Hepatitis A virology, Hepatitis A virus immunology, Hepatitis E blood, Hepatitis E virology, Hepatitis E virus genetics, Hepatitis E virus immunology, Humans, Immunoglobulin G blood, Pregnancy, Seroepidemiologic Studies, Hepatitis A epidemiology, Hepatitis E epidemiology, Pregnancy Complications, Infectious epidemiology, Pregnancy Complications, Infectious virology
- Abstract
Hepatitis E virus (HEV) infection is associated with a high fatality rate among pregnant women, and gestational complications have been reported among pregnant women infected with hepatitis A virus (HAV). The aim of this study was to determine the seroprevalence of HAV and HEV infections among pregnant women in Haiti. We stratified the population ( n = 1,307) between West and non-West regions. Specimens were tested for total HAV antibody (anti-HAV), and IgM and IgG HEV antibody (anti-HEV). Overall, 96.8% pregnant women were positive for total anti-HAV, 10.3% for IgG anti-HEV, and 0.3% for IgM anti-HEV. The prevalence of IgG anti-HEV in the non-West region (12.3%) was significantly greater than that in the West region (5.3%) ( P < 0.0001). Most pregnant women in Haiti had evidence of past exposure and immunity to HAV. The non-West region had a higher prevalence of HEV. Improvement in water and sanitation will help in the prevention and control of these infections in Haiti.
- Published
- 2019
- Full Text
- View/download PDF
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