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Transdisciplinary research has gained traction globally for mapping pathways for sustainable urbanisation. The involvement of local communities is believed to central to knowledge co-production needed to address sustainability challenges. But working with local communities can be challenging. This paper is structured around the authors' personal reflections on undertaking transdisciplinary household energy conservation projects in Ghana and South Africa. The paper reflects on the assumptions and challenges of doing transdisciplinary research in urban Africa and suggests some guidelines for consideration when doing transdisciplinary projects. An inductive analysis of our reflections showed five key challenges: lack of integration, divergent problem identification, tensions in knowledge co-production, asymmetrical power relations, and distrust and managing expectations. We draw on our collective experiences to develop guidelines for conducting transdisciplinary research in urban Africa. These guidelines are not prescriptive but can be useful for a growing and broader audience interested in undertaking transdisciplinary research. [ABSTRACT FROM AUTHOR]