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Here we describe a new, haploid and stroma forming species within the genus Epichloë, as Epichloë scottii sp. nov. The fungus was isolated from Melica uniflora growing in Bad Harzburg, Germany. Phylogenetic reconstruction using a combined dataset of the tubB and tefA genes strongly support that E. scottii is a distinct species and the so far unknown ancestor species of the hybrid E. disjuncta. A distribution analysis showed a high infection rate in close vicinity of the initial sampling site and only two more spots with low infection rates. Genetic variations in key genes required for alkaloid production suggested that E. scottii sp. nov. might not be capable of producing any of the major alkaloids including ergot alkaloid, loline, indole-diterpene and peramine. All isolates and individuals found in the distribution analysis were identified as mating-type B explaining the lack of mature stromata during this study. We further release a telomere-to-telomere de novo assembly of all seven chromosomes and the mitogenome of E. scottii sp. nov. [ABSTRACT FROM AUTHOR]

Mycotoxins in agriculturally used plants can cause intoxication in animals and can lead to severe financial losses for farmers. The endophytic fungus Epichloë festucae var. lolii living symbiotically within the cool season grass species Lolium perenne can produce vertebrate and invertebrate toxic alkaloids. Hence, an exact quantitation of alkaloid concentrations is essential to determine intoxication risk for animals. Many studies use different methods to detect alkaloid concentrations, which complicates the comparability. In this study, we showed that alkaloid concentrations of individual plants exceeded toxicity thresholds on real world grasslands in Germany, but not on the population level. Alkaloid concentrations on five German grasslands with high alkaloid levels peaked in summer but were also below toxicity thresholds on population level. Furthermore, we showed that alkaloid concentrations follow the same seasonal trend, regardless of whether plant fresh or dry weight was used, in the field and in a common garden study. However, alkaloid concentrations were around three times higher when detected with dry weight. Finally, we showed that alkaloid concentrations can additionally be biased to different alkaloid detection methods. We highlight that toxicity risks should be analyzed using plant dry weight, but concentration trends of fresh weight are reliable. [ABSTRACT FROM AUTHOR]

Abstract: The common forage grass Lolium perenne has evolved with the systemic fungal endophyte Epichloë festucae var. lolii. The endophyte provides herbivore resistance to the grass due to defensive alkaloids, some of which are toxic to grazing livestock. In this field study, we determine whether distribution of the endophyte‐grass association changes along a land‐use intensity gradient on 87 managed grasslands in three German regions. Endophyte infections were detected in 66% of the studied sites and infection rates within infected sites ranged from 1% to 95%. Alkaloid concentrations of lolitrem B (vertebrate toxin) exceeded the toxicity thresholds in 50 (14%) of 351 infected plants and of peramine (invertebrate deterrent/toxin) in 12 (3%) of 351 plants. Infection rates and alkaloid concentrations were not significantly affected by land‐use intensity and region, but alkaloid concentrations were higher in summer compared to spring. We conclude that risks for livestock intoxication are currently low, as (i) average alkaloid concentrations per grassland were always below toxicity thresholds and as (ii) none of the grasslands was dominated by L. perenne. We suggest avoidance of grass monocultures in Europe to keep intoxication risks for livestock low; we also recommend regular examination of seeds and grasslands, as seed producers might accidentally distribute infected seeds, and as climate warming might further enhance the distribution of Epichloë endophytes in European grasslands. [ABSTRACT FROM AUTHOR]