Abstract: Cyst beds in ships and ports in Finland have previously been unstudied. Therefore, sediments from ships’ ballast water tanks and four Finnish ports were sampled for dinoflagellate cysts and other phytoplankton. Untreated sediments were incubated at 10°C and 20°C in the local 6psu salinity for 1, 4 and 7days, and vegetative cells were examined with light and scanning electron microscope. Sediments were inhabited by various dinoflagellates, diatoms, chlorophytes, cyanophytes and small flagellates. Germinated dinoflagellates were found in 90% of ballast tanks and in all ports. Gymnodiniales spp. and Heterocapsa rotundata formed a major proportion of the proliferating dinoflagellate cells. One species, Peridinium quinquecorne, not previously reported from the Baltic Sea, was identified with SEM. The study emphasises that ships are potential transport vehicles for dinoflagellate cysts even in the low salinity Finnish waters, and small-sized dinoflagellates should be focused upon in ballast water studies. [Copyright &y& Elsevier]