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Large pulses of tree mortality have ushered in a major reorganization of Europe's forest ecosystems. To initiate a robust next generation of trees, the species that are planted today need to be climatically suitable throughout the entire twenty-first century. Here we developed species distribution models for 69 European tree species based on occurrence data from 238,080 plot locations to investigate the option space for current forest management in Europe. We show that the average pool of tree species continuously suitable throughout the century is smaller than that under current and end-of-century climate conditions, creating a tree species bottleneck for current management. If the need for continuous climate suitability throughout the lifespan of a tree planted today is considered, climate change shrinks the tree species pool available to management by between 33% and 49% of its current values (40% and 54% of potential end-of-century values), under moderate (Representative Concentration Pathway 2.6) and severe (Representative Concentration Pathway 8.5) climate change, respectively. This bottleneck could have strong negative impacts on timber production, carbon storage and biodiversity conservation, as only 3.18, 3.53 and 2.56 species of high potential for providing these functions remain suitable throughout the century on average per square kilometre in Europe. Our results indicate that the option space for silviculture is narrowing substantially because of climate change and that an important adaptation strategy in forestry-creating mixed forests-might be curtailed by widespread losses of climatically suitable tree species., (© 2024. The Author(s), under exclusive licence to Springer Nature Limited.)

Two recently published analyses make cases for severe bottlenecking of human populations occurring in the late Early Pleistocene, one case at about 0.9 Mya based on a genomic analysis of modern human populations and the low number of hominin sites of this age in Africa and the other at about 1.1 Mya based on an age inventory of sites of hominin presence in Eurasia. Both models point to climate change as the bottleneck trigger, albeit manifested at very different times, and have implications for human migrations as a mechanism to elude extinction at bottlenecking. Here, we assess the climatic and chronologic components of these models and suggest that the several hundred-thousand-year difference is largely an artifact of biases in the chronostratigraphic record of Eurasian hominin sites. We suggest that the best available data are consistent with the Galerian hypothesis expanded from Europe to Eurasia as a major migration pulse of fauna including hominins in the late Early Pleistocene as a consequence of the opening of land routes from Africa facilitated by a large sea level drop associated with the first major ice age of the Pleistocene and concurrent with widespread aridity across Africa that occurred during marine isotope stage 22 at ~0.9 Mya. This timing agrees with the independently dated bottleneck from genomic analysis of modern human populations and allows speculations about the relative roles of climate forcing on the survival of hominins., Competing Interests: Competing interests statement:The authors declare no competing interest.

Why do over 90% of the learners in Massive Open Online Courses (MOOCs) never finish the course? There is a need for further studies focusing on the learners' experiences of participating in MOOCs and factors that influence the decision to complete or drop out of the course. To deepen our understanding of why learners complete or drop out of MOOCs, we report on a qualitative case study based on in-depth interviews with 34 learners with different degrees of course completion for two MOOCs. A qualitative analysis of the interviews led to the identification of four main factors influencing dropout: (1) the learner's perception of the course content, (2) the learner's perception of the course design, (3) the learner's social situation and characteristics, and (4) the learner's ability to find and manage time effectively. How the learners conceptualized a MOOC had a strong impact on how they engaged with the contents. We discuss the implications of our results for MOOC practice in terms of time, openness and accessibility and provide recommendations for future research.

Europe has a well‐established network of breeding bird monitoring that is used to produce supranational indices of population trends for many species. However, a comparison of breeding bird censuses with other methods may be beneficial to confirm the validity of such indices. The aim of this study was to assess the value of standardized capture data of migratory birds at migration bottlenecks as an indicator of the effective breeding populations. One limitation to this method is that several populations are co‐occurring at these bottlenecks and their catchment areas need to be clearly identified to allow extrapolation of population indices. Here, we used standardized trends in capture numbers of 30 species on the island of Ponza, a migration bottleneck in the central Mediterranean, and compared them to population trends estimated in the putative catchment breeding areas between 2005 and 2016. The catchment areas were identified through the analysis of ring recoveries during the breeding season of birds passing through Ponza. Our results show an agreement between the population trends observed on Ponza and those in the breeding areas in 15 out of 30 species. The correlations were strongest in species with a more robust definition of the catchment areas, that is, species with more than 10 recoveries, and for which the recoveries were most likely of breeding birds. The main reason for disagreement between the two indices in the remaining species might be related to different intensity of sampling in different areas. This issue can be solved by further developing monitoring projects in underrepresented countries, as well as by intensifying monitoring through ringing, both in the breeding grounds and at migration bottlenecks. These results show that spring migration monitoring at bottlenecks has the potential to provide a valuable complement and an independent control of breeding bird surveys, allowing raising early warnings of population declines and contributing to their conservation. [ABSTRACT FROM AUTHOR]

Demographic change lies at the core of debates on genetic inheritance and resilience to climate change of prehistoric hunter-gatherers. Here we analyze the radiocarbon record of Iberia to reconstruct long-term changes in population levels and test different models of demographic growth during the Last Glacial-Interglacial transition. Our best fitting demographic model is composed of three phases. First, we document a regime of exponential population increase during the Late Glacial warming period (c.16.6-12.9 kya). Second, we identify a phase of sustained population contraction and stagnation, beginning with the cold episode of the Younger Dryas and continuing through the first half of the Early Holocene (12.9-10.2 kya). Finally, we report a third phase of density-dependent logistic growth (10.2-8 kya), with rapid population increase followed by stabilization. Our results support a population bottleneck hypothesis during the Last Glacial-Interglacial transition, providing a demographic context to interpret major shifts of prehistoric genetic groups in south-west Europe.

• Collected and consolidated a comprehensive set of supply and demand data from multiple data repositories, government agencies, freight carriers, research papers and reports, and text and oral communications with industry professionals for China-Europe containerized freight flows; • Constructed a multimodal freight transportation supernetwork for China-Europe containerized freight flows, including a liner shipping network run by all major liner shipping alliances, a freight rail network exclusively managed by the China Railway Express, and a domestic highway network in China and a multinational highway network in Europe; • Proposed and analyzed a multimodal multicommodity freight transportation network flow model with bottleneck congestion functions and service capacity constraints, in which the individual mode-route choice behavior is regulated by stochastic user equilibrium; • Developed, tested and analyzed a Lagrangian relaxation framework embedding a disaggregate simplicial decomposition algorithm for the developed multimodal multicommodity freight transportation network problem. As a traditional way for transporting containerized cargoes, international liner shipping has long played a dominant role in the China-Europe freight transportation market. In recent years, China Railway Express has offered a new and competitive freight transportation option, contributing to a significant increase in the trade volume by rail between China and Europe. With the goal of providing a holistic computational tool that can predict and analyze the spatial distribution of containerized freight flows and suggest strategic transportation infrastructure and service expansion options, this paper develops and implements a multimodal multicommodity freight transportation network equilibrium model, based on a newly constructed supernetwork integrating international liner shipping lines, international freight rail services, and international and domestic highway networks in relevant countries. The combined transportation mode-route choice behavior of individual shippers is characterized by the widely used multinomial logit model, where the values of time of different commodity categories are included in its utility functions. The congestion effects arising from bottleneck facilities along liner shipping and freight rail lines (i.e., seaports, water channels, and break-of-gauge stations) are first captured by queueing models and then approximated by polynomial delay functions, while the accommodation capacity of individual service lines is explicitly embedded into the model as hard constraints. This supernetwork equilibrium model is tackled by a subgradient algorithm in the Lagrangian relaxation framework embedding a disaggregate simplicial decomposition algorithm. Computational experiments are conducted with a multi-layer, hetero-structure set of supply and demand data collected from multiple data repositories, government agencies, freight carriers, and research papers and reports. The preliminary results exhibit the computational performance of the solution procedure and reveal the variation of congestion levels of bottleneck facilities, capacity usage profiles of service lines, and competitiveness conditions between liner shipping and freight rail services under different monthly demand patterns. [ABSTRACT FROM AUTHOR]

The inference of the demographic history of populations from genetic variability data is not only of academic interest. It also provides background information for the identification of genes which may have played a role in human evolution or in the aetiology of human disease. To obtain a clear picture of this background, it is necessary to compare data obtained from a number of genomic loci. Due to its very low recombination rate, the NF1 gene region can be regarded as a further suitable locus. A combined resequencing and SNP typing project in a European population disclosed the presence of only two well separated subgroups of NF1 sequences. Statistical analysis revealed a bimodal distribution of the pairwise differences, a positive value of Tajima’s D and a TMRCA of 700,000 years for the whole sample, and pairwise differences indicative for a growing population and TMRCAs of 130,000 to 150,000 years for the subgroups. Together, the data lead to a model that the recent European population went through a bottleneck during the last 150,000 years of its history. Regarding the given timeframe, this bottleneck could either reflect a speciation event which led to the anatomically modern human (AMH), or a severe reduction of the population size during the emigration of AMHs out of Africa or the immigration into Europe. [ABSTRACT FROM AUTHOR]

The genetic and demographic impact of European contact with Native Americans has remained unclear despite recent interest. Whereas archeological and historical records indicate that European contact resulted in widespread mortality from various sources, genetic studies have found little evidence of a recent contraction in Native American population size. In this study we use a large dataset including both ancient and contemporary mitochondrial DNA to construct a high-resolution portrait of the Holocene and late Pleistocene population size of indigenous Americans. Our reconstruction suggests that Native Americans suffered a significant, although transient, contraction in population size some 500 y before the present, during which female effective size was reduced by ∼50%. These results support analyses of historical records indicating that European colonization induced widespread mortality among indigenous Americans.

Fishery assessment models meant to determine sustainability of commercial marine fish failed to predict recent stock collapses due to overexploitation. One flaw of assessment models is that they strongly rely on catch and age-composition statistics, but largely ignore the genetic background of the studied populations. We examined population genetic structure of sardine (Sardina pilchardus) in the centraleastern and northeastern Atlantic Ocean and Mediterranean Sea to aid fishery management of this heavily fished small pelagic species. We found that sardine has a striking mitochondrial control region, and sequenced a fragment of 387 bp of its 5'-end in 261 individuals collected off the coasts of Morocco (Dakhla, Tantan, Safi, Larache, and Nador), Portugal (Quarteira), Spain (Pasajes, Barcelona), and Greece (Kavala). High levels of haplotypic diversity rendered a rather unresolved NJ phylogeny. The recovered tree had no phylogeographic structuring except for the clustering of 13 individuals of Safi. In contrast, individuals grouped together according to the presence or absence of a 13-bp insertion in the sequence. Phi(ST) pairwise comparisons and molecular variance analyses supported genetic differentiation between the population of Pasajes (Bay of Biscay), and those of the Mediterranean Sea and Moroccan coast, with a contact zone around the Strait of Gibraltar. This result confirms the existence of two subspecies, S. pilchardus pilchardus and S. pilchardus sardina that were previously identified based on meristics and morphometry. Mismatch distribution analysis showed that sardine populations are expanding since the Pleistocene. Surprisingly, the population of Safi showed strong and statistically significant levels of genetic differentiation that could be related with isolation and genetic drift. Comparative analysis of the Safi population versus the rest including mismatch distributions, and a Bayesian skyline plot suggest that the Safi population likely underwent an early genetic bottleneck. The genetic singularity of the Safi population could have been responsible for the historical collapse of this sardine stock in the 1970s.

Phylogeographical research has revealed several paradigm patterns of postglacial range expansion from the Mediterranean peninsulas to more northern parts of Europe. These range expansions have consequences for the genetic constitution of populations. Although many studies have been performed in mainland Europe, the colonization history of the British Isles is relatively poorly studied; the genetic consequences of the last glacial readvances and the climate optimum conditions, as well as the implications of the recent climatic conditions on the population genetic structures, are little understood. Therefore, we selected the common blue butterfly Polyommatus icarus as a model species for understanding more generally the colonization patterns of the British Isles and the genetic dynamics on these islands. Allozyme analyses of this butterfly show a rather high genetic diversity over continental Europe without major genetic differentiation. The situation on the British Isles is completely different. Here, populations show a much lower genetic diversity compared to mainland Europe. The genetic constitution is well differentiated from that observed on the European mainland, and the genetic differentiation among populations in Britain is stronger than at the European scale. These results support the hypothesis that a relatively cold-tolerant species such as the common blue could have colonized the British Isles early during the late glacial period and survived the last glacial readvances in small refugia in the South. The retraction of this species in small isolated populations could have caused the genetic impoverishment found. The subsequent forest climax during the climate optimum possibly restricted further expansion of this early succession species to small pockets all over the British Isles, resulting in the genetic patchwork that is still observed. Additionally, the relatively cool and rainy conditions one these islands might have caused bottlenecks, possibly enforcing these genetic patterns. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, ••, ••-••. [ABSTRACT FROM AUTHOR]

Infectious diseases and their demographic consequences are thought to influence the genetic diversity of populations. In Europe, during the last 50 years, the European rabbit (Oryctolagus cuniculus) has suffered two important viral epizootics: myxomatosis and rabbit viral haemorraghic disease (RVHD). Although mortality rates were very high, the impact of these diseases on genetic diversity has never been assessed directly. The subject of this paper is a wild rabbit population in France, which has been studied since the beginning of the 1980s. The first outbreak of RVHD occurred in 1995 and provoked a demographic crash. The population, sampled for the first time in 1982 and 1994, was sampled again at the end of 1996 to examine the impact of the epizootic on genetic diversity. In spite of the observed high mortality rate ( approximately 90%), analysis of 14 polymorphic loci (allozymes and microsatellites) showed no loss in genetic diversity after the epizootic. Determination of temporal changes in allele frequencies indicated that the population evolved under genetic drift. The temporal method of Waples demonstrated a significant decrease in the effective population size (Ne) correlated with the demographic crash due to the epizootic. However, the population had only been studied for two generations after the epizootic and the remnant population size probably stayed high enough ( approximately 50 individuals) to keep its genetic diversity at the precrash level. These results suggest that, contrary to what is usually thought and in spite of the subsequent high mortality rates, past epizootics (especially myxomatosis) may have had little effect on the genetic diversity of wild rabbit populations in Europe.

An analysis of Y-chromosomal haplotypes in several European populations reveals an almost monomorphic pattern in the Finns, whereas Y-chromosomal diversity is significantly higher in other populations. Furthermore, analyses of nucleotide positions in the mitochondrial control region that evolve slowly show a decrease in genetic diversity in Finns. Thus, relatively few men and women have contributed the genetic lineages that today survive in the Finnish population. This is likely to have caused the so-called "Finnish disease heritage"-i.e., the occurrence of several genetic diseases in the Finnish population that are rare elsewhere. A preliminary analysis of the mitochondrial mutations that have accumulated subsequent to the bottleneck suggests that it occurred about 4000 years ago, presumably when populations using agriculture and animal husbandry arrived in Finland.

Highly heritable phenotypic traits become prevalent in small populations. We estimated the heritability of the coat pattern of the Eurasian lynx (Lynx lynx) in captive individuals, and we explored changes in the proportions of three phenotypes (spotted, rosetted and uniform) in the wild-ranging native population in the Slovak Carpathians over the last six decades. Coat pattern was highly heritable in each geographically defined subspecies, as offspring greatly resembled their parents. In the last decades, we have recorded a significantly lowered proportion of spotted individuals in the native Carpathian population, which have represented a phenotype characteristic for this lineage (subspecies) and were predominant in the past. The proportion of spots and rosettes was equalised in the population during the most recent period, while the smallest, most depleted population sub-range was even dominated by the rosetted phenotype. The rapid change in the frequency of dominant phenotype may be attributed to the small population size with limited gene flow to marginal sub-ranges. High intensity traffic development and anthropogenic-induced mortality are suggested to be the primary factors that fragment the local population and reduce the number of reproducing lynx in the region. The Slovak lynx population is the main source for lynx reintroduction projects in Central Europe, and so the phenotype profile may be used as an effective indicator of potential genetic-based conservation problems in this autochthonous population. [ABSTRACT FROM AUTHOR]

Sharp declines in population size, known as genetic bottlenecks, increase the level of inbreeding and reduce genetic diversity threatening population sustainability in both short- and long-term.We evaluated the presence, severity and approximate time of bottlenecks in 34 European grayling (Thymallus thymallus) populations covering the majority of the species distribution using microsatellite markers. We identified footprints of population decline in all grayling populations using the M ratio test. In contrast to earlier simulation studies assuming isolated populations, forward simulations allowing low levels of migration demonstrated that bottleneck footprints measured using the M ratio can persist within small populations much longer (up to thousands of generations) than previously anticipated. Using a coalescence approach, the beginning of population reduction was dated back to 1,000-10,000 years ago which suggests that the extremely low M ratio in European grayling is most likely caused by the last glaciation and subsequent postglacial recolonization processes. In contrast to the M ratio, two alternative methods for bottleneck detection identified more recent bottlenecks in six populations and thus, from a conservation perspective, these populations warrant future monitoring. Based on a single time-point analysis using approximate Bayesian computation methodology, all grayling populations exhibited very small effective population sizes with the majority of Ne estimates below 50. Taken together, our results demonstrate the predominate role of genetic drift in European grayling populations in the short term but also emphasize the importance of gene flow counteracting the effects of genetic drift and loss of variation over longer evolutionary timescales. [ABSTRACT FROM AUTHOR]

The large American liver fluke (Fascioloides magna) is considered an invasive trematode parasite in Europe. Its origin dates back before the Cretaceous-Paleogene Mass Extinction, after which it survived at least three population bottlenecks and successful host switches before it arrived in Europe. The authors review the evolutionary history of F. magna, the distribution by its ancient proboscidean hosts, and the probable drivers of the switch to the white-tailed deer (Odocoileus virginianus). The review collects knowledge on the biology of intermediate hosts, which helps understand the factors that influence the epidemiology of F. magna in aquatic ecosystems. The authors demonstrate the adaptation potential of the parasite using data from both North American and European endemics. Finally, the study calls attention to the epidemiological risk of human-induced global change, with a special interest in the invasive snail species Pseudosuccinea columella. [ABSTRACT FROM AUTHOR]

The Cartographic Institute of Catalonia (ICC) produces commercial aerial photographic maps of locations in Europe and South America. These maps are often so large that it is necessary to produce one map from two or more photographs, which are combined two at a time in a process called mosaicking. The objective is to make the final map appear to be the product of a single photograph by producing a seam that is invisible even to an expert cartographer. The problem and a variation are modeled via bottleneck shortest paths and cycles. Optimization algorithms are developed for both, and the first has been implemented with demonstrable impact on the company. The second represents a new class of constrained shortest cycle problems. [ABSTRACT FROM AUTHOR]

Background: Anaplasma phagocytophilum is a tick-vectored, obligately intracellular bacterium that infects a diversity of vertebrate hosts. In North America, the Ap-ha variant of A. phagocytophilum can cause dangerous infections in humans, whereas symptomatic human infections in Europe are rare. Conversely, the European host-generalist ecotype of A. phagocytophilum frequently causes illness in domestic ruminants while no comparable infections have been recorded from North America. Despite these differences in pathogenicity, the Ap-ha variant is closely aligned phylogenetically with the European host-generalist ecotype. Furthermore, North American populations of A. phagocytophilum are less genetically diverse than those in Europe. Taken together, these observations suggest that the North American Ap-ha variant may represent an introduced population of this bacterium. Methods: Data from publicly available whole genomes of A. phagocytophilum were used to compare phylogeographic patterns and the extent of genetic divergence between the North American Ap-ha variant and the European host-generalist ecotype. Results: The results confirm that North American Ap-ha samples are phylogenetically nested within the diversity of the European host-generalist ecotype, and that Ap-ha likely radiated within the last 100 years. As expected, the Ap-ha variant also exhibited relatively low genetic diversity levels compared to the European host-generalist ecotype. Finally, North American Ap-ha harbored significantly more derived alleles than the European host-generalist A. phagocytophilum population. Conclusions: Collectively, these results support the hypothesis that the Ap-ha variant was recently introduced to North America from Europe and underwent a strong genetic bottleneck during this process (i.e. a 'founder event'). Adaptation to novel vectors may have also played a role in shaping genetic diversity and divergence patterns in these pathogenic bacteria. These findings have implications for future studies aimed at understanding evolutionary patterns and pathogenicity variation within A. phagocytophilum. [ABSTRACT FROM AUTHOR]

Studies the phylogeography of the hornbeam, a shade tolerant tree species which colonised Europe late in the Holocene, using cpDNA in order to investigate whether this postglacial recolonisation had led to a loss of chloroplast (cp) DNA diversity, as already described for other tree species, and especially the beech, another late-successional species. Results, including that a remarkably high value of differentiation among populations was found; Finding that pollen data are congruent with genetic data: during the last ice age, the hornbeam was restricted to the Balkans and to southern Italy and recolonised Europe northwards and westwards; Conclusion that conservation priorities should target several populations from these regions that are hotspots of diversity and that represent a small part of the range of the species.

The interest in microalgae as food in Europe is growing due to its remarkable features that can foster a sustainable economy. The lack of tradition on their use among Europeans is changing and a demand for more sustainable products is increasing. The legal framework from the microalgae stakeholders' point of view has been consistently identified as a bottleneck, regardless of its nutritional value and potential to provide added-value metabolites. Microalgae-based products have been mostly consumed as food supplements, which are characterized by some general uncertainty with regards to food security of products sourced from non-European countries. The novel foods regulation is a landmark in Europe's food law defining the conditions in which a new type of food can be commercialized. Currently, a more simplified and centralized version is in place, and around eleven microalgae-based products are on the market; however, more than half are represented by Schizochytrium sp. derived products (DHA-rich oil). Microalgae have immense potential as a sustainable food source; nonetheless, there is limited experience in assessing the safety of these microorganisms, considering the uncertainty around undesirable substances present in the way they are produced and their diverse metabolites. Here, we overview the regulatory use of microalgae as food in Europe with a focus on market introduction, highlighting the administrative procedures and scientific requirements to assess food safety. We also discuss the implications of the Transparency regulation related to microalgae as novel foods and provide considerations for a more solid interaction between academia and industry. [ABSTRACT FROM AUTHOR]

Tomato (Solanum lycopersicum L.) domestication and later introduction into Europe resulted in a genetic bottleneck that reduced genetic variation. Crosses with other wild tomato species from the Lycopersicon clade can be used to increase genetic diversity and improve important agronomic traits such as stress tolerance. However, many species in the Lycopersicon clade have intraspecific and interspecific incompatibility, such as gametophytic self-incompatibility and unilateral incompatibility. In this review, we provide an overview of the known incompatibility barriers in Lycopersicon. We begin by addressing the general mechanisms self-incompatibility, as well as more specific mechanisms in the Rosaceae, Papaveraceae, and Solanaceae. Incompatibility in the Lycopersicon clade is discussed, including loss of self-incompatibility, species exhibiting only self-incompatibility and species presenting both self-compatibility and selfincompatibility. We summarize unilateral incompatibility in general and specifically in Lycopersicon, with details on the ’self-compatible x selfincompatible’ rule, implications of self-incompatibility in unilateral incompatibility and self-incompatibility-independent pathways of unilateral incompatibility. Finally, we discuss advances in the understanding of compatibility barriers and their implications for tomato breeding. [ABSTRACT FROM AUTHOR]

Automated monitoring technologies can increase the efficiency of ecological data collection and support data‐driven conservation. Camera traps coupled with infrared light barriers can be used to monitor temperate‐zone bat assemblages at underground hibernacula, where thousands of individuals of multiple species can aggregate in winter. However, the broad‐scale adoption of such photo‐monitoring techniques is limited by the time‐consuming bottleneck of manual image processing. Here, we present BatNet, an open‐source, deep learning‐based tool for automated identification of 13 European bat species from camera trap images. BatNet includes a user‐friendly graphical interface, where it can be retrained to identify new bat species or to create site‐specific models to improve detection accuracy at new sites. Model accuracy was evaluated on images from both trained and untrained sites, and in an ecological context, where community‐ and species‐level metrics (species diversity, relative abundance, and species‐level activity patterns) were compared between human experts and BatNet. At trained sites, model performance was high across all species (F1‐score: 0.98–1). At untrained sites, overall classification accuracy remained high (96.7–98.2%), when camera placement was comparable to the training images (<3 m from the entrance; <45° angle relative to the opening). For atypical camera placements (>3 m or >45° angle), retraining the detector model with 500 site‐specific annotations achieved an accuracy of over 95% at all sites. In the ecological case study, all investigated metrics were nearly identical between human experts and BatNet. Finally, we exemplify the ability to retrain BatNet to identify a new bat species, achieving an F1‐score of 0.99 while maintaining high classification accuracy for all original species. BatNet can be implemented directly to scale up the deployment of camera traps in Europe and enhance bat population monitoring. Moreover, the pretrained model can serve as a baseline for transfer learning to automatize the image‐based identification of bat species worldwide. [ABSTRACT FROM AUTHOR]

Arrival, establishment, and further dispersal of non‐native natural enemies are considered essential for a successful biological control programme, while among the factors that may determine the success of such a programme, genetic diversity of the introduced population plays an important role in the establishment of a non‐native species.The Chinese parasitoid wasp Torymus sinensis Kamijo (Hymenoptera: Torymidae) was initially released in Europe in Italy to control biologically the Asian chestnut gall wasp Dryocosmus kuriphilus Yasumatsu (Hymenoptera: Cynipidae), and reduce the damage induced on sweet chestnut (Castanea sativa Miller). In the following years, T. sinensis was then released in numerous other European countries as a biological control agent of D. kuriphilus. Its presence has also been reported beyond the countries of release due to rapid natural dispersal.To assess the post‐release genetic diversity of D. kuriphilus, we screened T. sinensis populations from six European countries and tested the possibility of these populations suffering from frequently observed genetic effects that could threaten its successful establishment in Europe.Our results exhibit that T. sinensis populations have suffered neither from the Allee effect nor from genetic bottleneck after their release and establishment in Europe, something that increases the possibility to effectively control D. kuriphilus in Europe. [ABSTRACT FROM AUTHOR]

The Trans-Caspian International Transport Route is one of the branches of the Belt & Road Initiative. Its importance is growing for political reasons: the war in Ukraine and the pressure from the US to limit Chinese business activity in Europe. If trade links between China and the EU are nevertheless maintained, a TITR with a fulcrum in Azerbaijan could absorb much of the now bottleneck traffic on the northern section of the BRI. Bulgaria will be able to take advantage of this through its infrastructure assets if the EU clarifies its strategy on the BRI and revives the TRACECA programme. [ABSTRACT FROM AUTHOR]

The Eurasian field vole (Microtus agrestis) comprises three evolutionarily significant units (ESUs). The northern ESU is found at higher latitudes across the western Palaearctic region and includes six, largely allopatric, mitochondrial DNA lineages that were derived from population bottlenecks. One of these lineages is found in southern Britain and nearby areas of continental Europe. A prominent sub-lineage is nested within, and therefore derived from, the part of this lineage occupying southern Britain. The sub-lineage consists of an abundant central haplotype together with a series of closely related haplotypes, a distribution that would result from either a recent population bottleneck or a selective sweep. To distinguish between these, we sequenced a Y-chromosome marker in 167 field voles from Britain and Europe, and analysed a panel of 13 autosomal microsatellite loci in 144 field voles from eight populations in Britain. The Y-chromosome marker showed a continental-scale pattern of variation that was not aligned with that of the mitochondrial marker, while microsatellite variation did not show any evidence for a bottleneck, tentatively favouring selection instead. This implies a role for both stochastic and selective processes in generating phylogeographical patterns at different scales in the field vole. [ABSTRACT FROM AUTHOR]

Aim Moose, Alces alces (Linnaeus, 1758), survived the European Pleistocene glaciations in multiple southern refugia, in a northern refugium near the Carpathians and possibly in other locations. During the second millennium ad, moose were nearly extirpated in Europe and only recolonized their current range after World War II. The number and location of refugia during the Pleistocene and recent population lows may have affected the current genetic diversity. We sought to characterize the genetic diversity in European moose in order to determine its genetic structure and the location of genetic hotspots as a way of inferring its population history and the number of Last Glacial Maximum ( LGM) refugia. Location Europe. Methods We sequenced 538 nucleotides from the mitochondrial control region of 657 moose from throughout the species' European range. We estimated diversity within and among 16 sampling localities, and used samova to cluster sampling locations into subpopulations. We constructed phylogenetic trees and median-joining networks to examine systematic relationships, and conducted Bayesian analysis of the coalescent and used mismatch distributions and approximate Bayesian computation to infer demographic history. Results Estonia had the highest nucleotide diversity, and western Belarus had the highest haplotype diversity. We observed four regional populations from the samova analysis. We found three haplogroups in European moose, probably representing lineages conserved in different refugia during the Pleistocene. European moose underwent spatial expansion after the LGM, but did not undergo demographic expansion. The effective population size has declined markedly within the last 2000 years. Main conclusions The current levels and distribution of genetic diversity in European moose indicate the effects both of Pleistocene glaciations and of a recent bottleneck, probably associated with anthropogenic influences such as pastoralization and hunting, and a very recent re-expansion. We show that both historical and recent events can influence the diversity and distribution of a large mammal on a large scale. [ABSTRACT FROM AUTHOR]

Genetic analyses of host-specific parasites can elucidate the evolutionary histories and biological features of their hosts. Here, we used population-genomic analyses of ectoparasitic seal lice (Echinophthirius horridus) to shed light on the postglacial history of seals in the Arctic Ocean and the Baltic Sea region. One key question was the enigmatic origin of relict landlocked ringed seal populations in lakes Saimaa and Ladoga in northern Europe. We found that that lice of four postglacially diverged subspecies of the ringed seal (Pusa hispida) and Baltic gray seal (Halichoerus grypus), like their hosts, form genetically differentiated entities. Using coalescent-based demographic inference, we show that the sequence of divergences of the louse populations is consistent with the geological history of lake formation. In addition, local effective population sizes of the lice are generally proportional to the census sizes of their respective seal host populations. Genome-based reconstructions of long-term effective population sizes revealed clear differences among louse populations associated with gray versus ringed seals, with apparent links to Pleistocene and Holocene climatic variation as well as to the isolation histories of ringed seal subspecies. Interestingly, our analyses also revealed ancient gene flow between the lice of Baltic gray and ringed seals, suggesting that the distributions of Baltic seals overlapped to a greater extent in the past than is the case today. Taken together, our results demonstrate how genomic information from specialized parasites with higher mutation and substitution rates than their hosts can potentially illuminate finer scale population genetic patterns than similar data from their hosts., (© 2024 The Author(s). Molecular Ecology published by John Wiley & Sons Ltd.)

Simple Summary: The development of skeletal anomalies in the early life stage of gilthead seabream (Sparus aurata) poses a significant challenge for farmers, affecting their profit margins, animal welfare, and the consumers' perception of the aquaculture industry. Although many factors have been considered to be causative in the development of skeletal anomalies in marine finfish, the stocking density and available swimming space represent two key parameters which can be easily manipulated by the farmers during the critical phase of pre-ongrowing (prior to being placed in sea cages). This work aims at distinguishing which among tank volume and stocking density is the driving factor eliciting the development of skeletal anomalies during the pre-ongrowing phase in gilthead seabream, a productive cycle in which many skeletal anomalies can arise, particularly those affecting the vertebral axis. The results from this work indicated that particular cranial and axis deformities affected fish in higher incidences when they were reared at higher densities. The results are discussed through an eco-evo-devo approach in relation to the potential mechanisms at play affecting the increased prevalence of skeletal anomalies found. This research represents an intriguing contribution to aquaculture with results that can be applied directly to the production methods used by fish farmers to ameliorate the skeletal and morphological quality of farmed gilthead seabream. Gilthead seabream (Sparus aurata) production is a highly valued aquaculture industry in Europe. The presence of skeletal deformities in farmed gilthead seabream represents a major bottleneck for the industry leading to economic losses, negative impacts on the consumers' perception of aquaculture, and animal welfare issues for the fish. Although past work has primarily focused on the hatchery phase to reduce the incidence of skeletal anomalies, this work targets the successive pre-ongrowing phase in which more severe anomalies affecting the external shape often arise. This work aimed to test the effects of: (i) larger and smaller tank volumes, stocked at the same density; and (ii) higher and lower stocking densities maintained in the same water volume, on the skeleton of gilthead seabream fingerlings reared for ~63 days at a pilot scale. Experimental rearing was conducted with gilthead seabream juveniles (~6.7 ± 2.5 g), which were selected as 'non-deformed' based on external inspection, stocked at three different densities (Low Density (LD): 5 kg/m3; Medium Density (MD): 10 kg/m3; High Density (HD): 20 kg/m3) in both 500 L and 1000 L tanks. Gilthead seabream were sampled for growth performance and radiographed to assess the skeletal elements at the beginning and end of the experimental trial. Results revealed that (i) LD fish were significantly longer than HD fish, although there were no differences in final weights, regardless of the water volume; (ii) an increase in the prevalence of seabream exhibiting cranial and vertebral axis anomalies was found to be associated with increased density. These results suggest that farmers can significantly reduce the presence of some cranial and axis anomalies affecting pre-ongrown gilthead seabream by reducing the stocking density. [ABSTRACT FROM AUTHOR]

Species-rich calcareous grasslands in Europe strongly declined during the twentieth century due to drastic land use changes. Many grasslands were converted into more productive pastures or are covered by shrubs or forests today, since they were overgrown after abandonment or afforested. Restoration of calcareous grasslands by shrub or forest clearing and subsequent recolonization of grassland species from adjacent grasslands is, therefore, an important conservation approach. Restored populations of calcareous grassland species may, however, differ from their source populations in genetic diversity and differentiation due to potential founder and bottleneck effects. In our study we analyzed, therefore, the impact of restoration by forest clearing and natural recolonization on the genetic variation of three common calcareous grassland species (Agrimonia eupatoria, Campanula rotundifolia, and Knautia arvensis) without a contribution of persistent seed bank, in South Western Germany. We used molecular markers AFLPs (Amplified fragment length polymorphisms) to compare genetic diversity within and differentiation between spontaneously recovered subpopulations with adjacent historically old, natural subpopulations at eight study sites. Restored parts of the grasslands have been re-established during the 1990s. Molecular markers revealed broadly similar levels of genetic diversity in source and restored subpopulations of the study species. Only A. eupatoria exhibited slightly higher diversity in restored subpopulations, which may be explained by higher dispersal potential due to the hooky fruits of the species. Genetic differentiation between source and restored subpopulations was not significant, indicating strong gene flow between the subpopulations. Our study underlines, therefore, that restoration of calcareous grasslands by natural recolonization after forest clearing is an efficient method to re-establish genetically variable subpopulations comparable to their sources. [ABSTRACT FROM AUTHOR]

The European flat oyster, Ostrea edulis, once formed extensive reef habitats throughout European seas and estuaries. These reefs are now largely functionally extinct, yet interest and support for their restoration is rapidly growing. A major bottleneck to scaling up oyster reef restoration is the lack of available oysters to supply the growing demand. This study aimed to identify the ten questions which, if answered, would increase the consistency and success in hatchery production of O. edulis for habitat restoration. Candidate questions were submitted by representatives from twelve commercial and research hatcheries across Europe. The list of 98 candidate questions were collaboratively discussed by experts from nine research hatcheries across eight countries in Europe, to identify the top ten questions via an iterative and open process. Questions were grouped into the following themes: conditioning and feeding, larval rearing, disease and water quality, hatchery protocol, genetics, and hatchery management. There were several overarching topics spanning these themes, including diet optimisation, maximising the effective population size, and developing the technical skillbase in order to increase hatchery production to meet the projected increase in demand for oyster seed for habitat restoration efforts. We anticipate this list will provide a starting point for collaborative research efforts across Europe, as well as assisting policy makers and funders in identifying key knowledge gaps. [ABSTRACT FROM AUTHOR]

The European flat oyster, Ostrea edulis, is a habitat-forming bivalve which was historically widespread throughout Europe. Following its decline due to overfishing, pollution, sedimentation, invasive species, and disease, O. edulis and its beds are now listed as a threatened and/or declining species and habitat by OSPAR. Increasing recognition of the plight of the oyster, alongside rapidly developing restoration techniques and growing interest in marine restoration, has resulted in a recent and rapid growth in habitat restoration efforts. O. edulis seed supply is currently a major bottleneck in scaling up habitat restoration efforts in Europe. O. edulis has been cultured for centuries, however, research into its culture declined following the introduction of the Pacific oyster, Crassostrea gigas to Europe in the early 1970 s. Recent efforts to renew both hatchery and pond production of O. edulis seed for habitat restoration purposes are hampered by restoration project timelines and funding typically being short, or projects not planning appropriately for the timescales required for investment, research-and-development and delivery of oyster seed by commercial producers. Furthermore, funding for restoration is intermittent, making long-term commitments between producers and restoration practitioners difficult. Long-term, strategic investment in research and production are needed to overcome these bottlenecks and meet current ambitious restoration targets across Europe. [ABSTRACT FROM AUTHOR]

Serpula lacrymans is the most notorious decayer of wooden buildings in temperate regions. The occurrence of geographically widespread vegetative compatibility groups (VCG) in S. lacrymans in Europe is demonstrated in this study. Among 22 heterokaryotic isolates of S. lacrymans, five VCG were found. The most widespread VCG included isolates from Belgium, south and central Norway, separated by more than 1500 km. No other genetic variation, measured as DNA sequence variation or ISSR polymorphisms, was detected between the investigated S. lacrymans isolates, whereas a considerable level of genetic variation was found among five European isolates of the sister taxon, S. himantioides. It is hypothesised that isolates of S. lacrymans have lost their ability to recognize self from nonself due to sharing of similar VC alleles, caused by a recent genetic bottleneck during the establishment in northern Europe. Isolates re-isolated from overlapping mycelial zones between different compatible isolates had significantly slower growth than that of the original isolates and the different isolates within a VCG had different growth morphology, indicating that isolates within a single VCG may belong to different genets. [ABSTRACT FROM AUTHOR]

The geographical distributions of the two cryptic species of the wetland moss Hamatocaulis vernicosus were mapped for western, central and northern Europe, based on identifications of the two by the nuclear ITS1 + 2 and the plastid rpl16 and trnL–trnF. The distributions of the two cryptic species overlap to a large extent. However, in the west and south-west only cryptic species 1 is present, whereas in the boreal north only cryptic species 2 occurs, which agrees with its distribution in Scandinavia. Despite these differences in distribution, no differences between the two cryptic species were revealed in habitat water chemistry, elevation distribution or climatic niches. The difference in distribution therefore suggests that cryptic species 1 could have survived the glacial period in southern Europe and cryptic species 2 in northern or eastern Europe. However, the studied molecular markers did not reveal geographical patterns suggesting origins in different glacial refugia. Although populations of both cryptic species have decreased in large portions of western Europe, a significantly negative Tajima's D may reflect the long-term expansion south of Scandinavia since the glacial bottleneck, potentially correlated with the expansion of earlier extensive agricultural management of wetlands. [ABSTRACT FROM AUTHOR]

Few complete human genomes from the European Early Upper Palaeolithic (EUP) have been sequenced. Using novel sampling and DNA extraction approaches, we sequenced the genome of a woman from "Peştera Muierii," Romania who lived ∼34,000 years ago to 13.5× coverage. The genome shows similarities to modern-day Europeans, but she is not a direct ancestor. Although her cranium exhibits both modern human and Neanderthal features, the genome shows similar levels of Neanderthal admixture (∼3.1%) to most EUP humans but only half compared to the ∼40,000-year-old Peştera Oase 1. All EUP European hunter-gatherers display high genetic diversity, demonstrating that the severe loss of diversity occurred during and after the Last Glacial Maximum (LGM) rather than just during the out-of-Africa migration. The prevalence of genetic diseases is expected to increase with low diversity; however, pathogenic variant load was relatively constant from EUP to modern times, despite post-LGM hunter-gatherers having the lowest diversity ever observed among Europeans. • Peştera Muierii woman is related to Europeans, but she is not a direct ancestor • Reduced diversity in Europe caused by Last Glaciation, not out-of-Africa bottleneck • Genetic load appears indifferent across 40,000 years of European history • New DNA extraction approach recovers up to 33 times more DNA from ancient remains Svensson et al. sequence the complete genome of a woman from "Peştera Muierii," Romania, who lived 34,000 years ago. Her genome is similar to modern-day Europeans, but she is not a direct ancestor. Her genome shows high levels of diversity, revealing that much loss of diversity in non-Africans occurred after she lived rather than before her time. [ABSTRACT FROM AUTHOR]

Background and Aims European mesic meadows are semi-natural open habitats of high biodiversity and an essential part of European landscapes. These species-rich communities can be a source of seed mixes for ecological restoration, urban greening and rewilding. However, limited knowledge of species germination traits is a bottleneck to the development of a competitive native seed industry. Here, we synthesize the seed ecology of mesic meadows. Methods We combined our own experimental data with data obtained from databases to create a combined dataset containing 2005 germination records of 90 plant species from 31 European countries. We performed a Bayesian meta-analysis of this dataset to test the seed germination response to environmental cues including scarification, stratification, temperature, alternating temperature and light. We also used multivariate ordination to check the relationship between seed traits (germination and morphology) and species ecological preferences, and to compare the seed ecology of mesic meadows with that of other herbaceous plant communities from the same geographic area. Key Results The seed ecology of mesic meadows is characterized by (1) high seed germinability when compared with other herbaceous plant communities; (2) low correspondence between seed traits and species ecological preferences; and (3) a deep phylogenetic separation between the two major families, Poaceae and Fabaceae. Poaceae produce many light seeds that respond to gap-detecting germination cues (alternating temperatures and light); Fabaceae produce fewer heavy seeds, which need scarification to break their physical dormancy. Conclusions High germinability of meadow seeds will reduce their capacity to form persistent seed banks, resulting in dispersal limitations to passive regeneration. For centuries, human activities have shaped the regeneration of meadows, leading to a loss of seed dormancy and decoupling seeds from seasonal cycles, as has been found in many domesticated species. The same anthropic processes that have shaped semi-natural mesic meadows have left them dependent on continued human intervention for their regeneration, highlighting the importance of active restoration via seed supply. [ABSTRACT FROM AUTHOR]

Quaternary climatic fluctuations changed the floristic composition of large areas and forced biota to repeated movements following gradients of their ecological tolerance. Different and contrasting patterns of responses were reported for various species. In this study we focused on Adenophora liliifolia, a perennial herbaceous species representing a south Siberian floristic element in European flora, well adapted to a continental climate. We investigated the genetic diversity and phylogeography of the species within Europe. The results show the absence of stronger sequence differentiation across the investigated 3600 km long transect, which reflects the young evolutionary origin of the species and/or repeated population contractions/expansions accompanied by bottleneck during the Quaternary climatic fluctuations. Along with this, the results suggest several regions located in Carpathians, Alps-Dinarides, and in non-glaciated parts of Central Russia with high haplotype diversity, which probably served as refugia. Low genetic diversity, the prevalence of a single cpDNA haplotype, and the genetic composition of the investigated European sites suggest re-colonization of Central Europe from a refugium located in southern Europe. The distribution of genetic variation and moderate genetic differentiation of the investigated sites may indicate the process of fragmentation of the common genetic pool in Central Europe. Projections of ongoing climate change during the twenty-first century are not favorable for species persistence in Central Europe. In the case of ex-situ conservation actions, we recommend protection and proper management of rapidly vanishing populations and maintenance of genetic diversity, especially in regions with high haplotype diversity. [ABSTRACT FROM AUTHOR]

The author reflects on the challenges facing the veterinary profession in the rapidly changing international agricultural industry in Europe. The author cites examples of the challenges of the twenty-first century including prevention of disease, enhance animal welfare and farmer profitability while taking awareness of food safety issues, the consumer and the environment. He stresses the inadequacy of emphasis on the application of knowledge to the development of disease management systems.

Iron deficiency anemia is among the most frequent causes of disability. Intravenous iron is the quickest way to correct iron deficiency, bypassing the bottleneck of iron intestinal absorption, the only true mechanism of iron balance regulation in human body. Intravenous iron administration is suggested in patients who are refractory/intolerant to oral iron sulfate. However, the intravenous way of iron administration requires several precautions; as the in-hospital administration requires a resuscitation service, as imposed in Europe by the European Medicine Agency, it is very expensive and negatively affects patient's perceived quality of life. A new oral iron formulation, Sucrosomial iron, bypassing the normal way of absorption, seems to be cost-effective in correcting iron deficiency anemia at doses higher than those usually effective with other oral iron formulations. In this multicentric randomized study, we analyze the cost-effectiveness of intravenous sodium ferrigluconate vs oral Sucrosomial iron in patients with iron deficiency anemia refractory/intolerant to oral iron sulfate without other interfering factors on iron absorption. [ABSTRACT FROM AUTHOR]

Globalization and international trade have impacted organisms around the world leading to a considerable number of species establishing in new geographic areas. Many organisms have taken advantage of human‐made environments, including buildings. One such species is the dry rot fungus Serpula lacrymans, which is the most aggressive wood‐decay fungus in indoor environments in temperate regions. Using population genomic analyses of 36 full genome sequenced isolates, we demonstrated that European and Japanese isolates are highly divergent and the populations split 3000–19,000 generations ago, probably predating human influence. Approximately 250 generations ago, the European population went through a tight bottleneck, probably corresponding to the fungus colonization of the built environment in Europe. The demographic history of these populations, probably lead to low adaptive potential. Only two loci under selection were identified using a Fst outlier approach, and selective sweep analyses identified three loci with extended haplotype homozygosity. The selective sweep analyses found signals in genes possibly related to decay of various substrates in Japan and in genes involved DNA replication and protein modification in Europe. Our results suggest that the dry rot fungus independently established in indoor environments in Europe and Japan and that invasive species can potentially establish large populations in new habitats based on a few colonizing individuals. [ABSTRACT FROM AUTHOR]

One major bottleneck in the ongoing COVID-19 pandemic is the limited number of critical care beds. Due to the dynamic development of infections and the time lag between when patients are infected and when a proportion of them enters an intensive care unit (ICU), the need for future intensive care can easily be underestimated. To infer future ICU load from reported infections, we suggest a simple statistical model that (1) accounts for time lags and (2) allows for making predictions depending on different future growth of infections. We have evaluated our model for three heavily affected regions in Europe, namely Berlin (Germany), Lombardy (Italy), and Madrid (Spain). Before extensive containment measures made an impact, we first estimate the region-specific model parameters, namely ICU rate, time lag between infection, and ICU admission as well as length of stay in ICU. Whereas for Berlin, an ICU rate of 6%, a time lag of 6 days, and a stay of 12 days in ICU provide the best fit of the data, for Lombardy and Madrid the ICU rate was higher (18% and 15%) and the time lag (0 and 3 days) and the stay in ICU (3 and 8 days) shorter. The region-specific models are then used to predict future ICU load assuming either a continued exponential phase with varying growth rates (0–15%) or linear growth. By keeping the growth rates flexible, this model allows for taking into account the potential effect of diverse containment measures. Thus, the model can help to predict a potential exceedance of ICU capacity depending on future growth. A sensitivity analysis for an extended time period shows that the proposed model is particularly useful for exponential phases of the disease. [ABSTRACT FROM AUTHOR]

Abstract: The paper presents a technique for detection of “bottlenecks” in gas transportation networks in emergency situations. The described approach makes it possible to formulate the optimal ways to tackle negative consequences for gas consumers. The technique is based on the “Oil and Gas” software developed at Energy Systems Institute SB RAS and is exemplified with the European gas pipeline network. [Copyright &y& Elsevier]

Loss of genetic variation from genetic drift during population bottlenecks has been shown for many species. Red deer (Cervus elaphus) may have been exposed to bottlenecks due to founder events during postglacial colonisation in the early Holocene and during known population reductions in the eighteenth and nineteenth centuries. In this study, we assess loss of genetic variation in Scandinavian red deer due to potential bottlenecks by comparing microsatellite (n=14) and mitochondrial DNA variation in the Norwegian and Swedish populations with the Scottish, Lithuanian and Hungarian populations. Bottlenecks are also assessed from the M ratio of populations, heterozygosity excess and from hierarchical Bayesian analyses of their demographic history. Strong genetic drift and differentiation was identified in both Scandinavian populations. Microsatellite variation was lower in both Scandinavian populations compared with the other European populations and mitochondrial DNA variation was especially low in the Swedish population where only one unique haplotype was observed. Loss of microsatellite alleles was demonstrated by low M ratios in all populations except the Hungarian. M ratios' were especially low in the Scandinavian populations, indicating additional or more severe bottlenecks. Heterozygosity excess compared with the expectation from the number of observed microsatellite alleles suggested a recent bottleneck of low severity in the Norwegian population. Hierarchical Bayesian coalescent analyses consistently yielded estimates of a large ancestral and a small current population size in all investigated European populations and suggested the onset of population decline to be between 5,000 and 10,000 years ago, which coincide well with postglacial colonisation. [ABSTRACT FROM AUTHOR]

Abstract: Net Neutrality has become the focus of attention in the regulatory debate on the Internet. This article attempts to strip down the debate to its bare essential. It identifies two main types of Net Neutrality obligations that have been put forward and assesses what type of potential concerns they may be designed to address. It concludes that while some of these concerns may be important it remains doubtful (at least in Europe) that an ex ante per se rule, such as those proposed under the Net Neutrality term, is the best way to address them. [ABSTRACT FROM AUTHOR]