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Introduction: Phytophthora ramorum is a quarantine pathogen that causes leaf blight and shoot dieback of the crown, bark cankers and death on a number of both ornamental and forest trees, especially in North America and northern Europe, where it has produced severe outbreaks. Symptoms caused by P. ramorum can be confused with those by other Phytophthora and fungal species. Early and accurate detection of the causal pathogen P. ramorum is crucial for effective prevention and control of Sudden Oak Death., Methods: In this study, we developed a P. ramorum detection technique based on a combination of recombinase polymerase amplification (RPA) with CRISPR/Cas12a technology (termed RPACRISPR/ Cas12a)., Results: This novel method can be utilized for the molecular identification of P. ramorum under UV light and readout coming from fluorophores, and can specifically detect P. ramorum at DNA concentrations as low as 100 pg within 25 min at 37°C., Discussion: We have developed a simple, rapid, sensitive, unaided-eye visualization, RPA CRISPR/Cas12a-based detection system for the molecular identification of P. ramorum that does not require technical expertise or expensive ancillary equipment. And this system is sensitive for both standard laboratory samples and samples from the field., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Guo, Xia, Dai, Liu, Shamoun and CuiPing.)

Campylobacter continues to be the number one cause of bacterial gastroenteritis in Europe. Poultry, and especially broiler chickens, is considered an important reservoir for Campylobacter spp. Poultry producers prioritize to identify and reduce the number of Campylobacter contaminated chicken flocks by tightening biosecurity and mitigation actions at slaughter. Campylobacter- positive flocks must therefore be identified as close to slaughter as possible, and rapid detection methods are needed. Here we evaluated the applicability, sensitivity, and specificity of four commercially available rapid methods to detect Campylobacter in naturally contaminated chicken cecal droppings on-farm before slaughter against an established qPCR method. The Biofire® FilmArray® Gastrointestinal Panel assay, the VIDAS Campylobacter assay, the Singlepath® Campylobacter test, and OptiGenes' Genie Campylobacter isothermal DNA amplification were assessed in a pilot-study. The OptiGenes' Genie Campylobacter isothermal DNA amplification was also tested under field conditions. The Biofire® FilmArray® showed superior sensitivity and specificity compared to the three other rapid tests but had a lower throughput and a higher cost. While the VIDAS Campylobacter , Singlepath® Campylobacter and the isothermal DNA amplification were affordable, their unsatisfactory sensitivity (10%–71%) left these unsuitable to monitor Campylobacter carriage in chickens. An additional finding of this study is that 38% of flocks positive for Campylobacter at slaughter became contaminated during the last week of rearing. Therefore, increased efforts to develop suitable methods to detect Campylobacter rapidly and reliably in chickens close to slaughter are needed. • Four rapid Campylobacter detection methods for chicken dropping tested. • Approximately 70% of Campylobacter positive flocks were detected using an isothermal DNA amplification. • Nearly 40% of Campylobacter positive flocks at slaughter acquire Campylobacter during the last week of rearing. • Increased efforts to detect Campylobacter in chickens at slaughter is needed. [ABSTRACT FROM AUTHOR]