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This preliminary investigation aimed to detect concentrations of chlorinated pesticides and PCBs in 40 sediment samples from three desert oases located in Kharga, Dakhla and Farafra in western Egypt. The residues of 18 PCBs and 16 chlorinated pesticides were measured by GC–MS/MS (SRM) method. The results showed that PCBs and pesticides were present in all studied samples. The concentrations of individual PCBs ranged from undetected to 3.99 ng/g dw in all these sediment samples. The total residue of pesticides (ng/g, dry weight) in sediment samples also varied from 5.18 to 25.92, 5.41 to 29.49, and 5.93 to 24.19 ng/g dw for the Kharga, Dakhla and Farafra Oases, respectively. The concentrations of PCBs and chlorinated pesticides detected in these oasis sediments were lower than that reported for other worldwide locations. According to the recorded concentrations in this baseline study of PCBs and total DDTs, the results revealed the minimal risks to organisms and people in the studied area according to the Effects Range-Low (ERL) and Effects Range-Median (ERM) guideline values. • Pesticides and PCBs residues in the Dakhla, Kharga and Farafra Oases sediment. • Pesticides and PCBs concentrations are still lower than in other Egyptian sites. • 18 PCBs and 16 pesticides were measured in sediments by GC–MS/MS (SRM) method. [ABSTRACT FROM AUTHOR]