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Coffee leaf rust is a prevalent botanical disease that causes a worldwide reduction in coffee supply and its quality, leading to immense economic losses. While several pandemic intervention policies (PIPs) for tackling this rust pandemic are commercially available, they seem to provide only partial epidemiological relief for farmers. In this work, we develop a high-resolution spatiotemporal economical-epidemiological model, extending the Susceptible-Infected-Removed model, that captures the rust pandemic's spread in coffee tree farms and its associated economic impact. Through extensive simulations for the case of Colombia, a country that consists mostly of small-size coffee farms and is the second-largest coffee producer in the world, our results show that it is economically impractical to sustain any profit without directly tackling the rust pandemic. Furthermore, even in the hypothetical case where farmers perfectly know their farm's epidemiological state and the weather in advance, any rust pandemic-related efforts can only amount to a limited profit of roughly 4% on investment. In the more realistic case, any rust pandemic-related efforts are expected to result in economic losses, indicating that major disturbances in the coffee market are anticipated., (© 2024 Author(s). All article content, except where otherwise noted, is licensed under a Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC) license (https://creativecommons.org/licenses/by-nc/4.0/).)

The coffee bean is object of researches in our country since this represents a greater percentage of Colombian exports Several studies have focused on field research, soil survey, pest management, spraying, among other. But there are few researches about coffee beans at the microscopic level, In this paper is the analysis of the vibrational structure of comercial coffee beans, by spectrometric techniques Raman microscopy in situ and Fourier Transform Infrared Spectroscopy (FTIR) for determination of its organoleptic. [ABSTRACT FROM AUTHOR]

Abstract: Coffee (Coffea arabica) plant tissues were surface-sterilized and fungal endophytes isolated using standard techniques, followed by DNA extraction and sequencing of the internal transcribed spacer region (ITS). A total of 843 fungal isolates were recovered and sequenced (Colombia, 267; Hawai''i, 393; Mexico, 109; Puerto Rico, 74) yielding 257 unique ITS genotypes (Colombia, 113; Hawai''i, 126; Mexico, 32; Puerto Rico, 40). The most abundant taxa were Colletotrichum, Fusarium, Penicillium, and Xylariaceae. Overall, 220 genotypes were detected in only one of the countries sampled; only two genotypes were found in all four countries. Endophytes were also isolated from Coffea canephora, Coffea congensis, Coffea liberica, Coffea macrocarpa, Coffea racemosa, and Coffea stenophylla in Hawai''i. The high biodiversity of fungal endophytes in coffee plants may indicate that most of these are “accidental tourists” with no role in the plant, in contrast to endophytes that could be defined as “influential passengers” and whose role in the plant has been elucidated. This study, the most comprehensive analysis of fungal endophytes associated with a single host species, demonstrates that coffee plants serve as a reservoir for a wide variety of fungal endophytes that can be isolated from various plant tissues, including the seed, and illustrates the different fungal communities encountered by C. arabica in different coffee-growing regions of the world. [Copyright &y& Elsevier]

The aim of this study was to identify organochlorine (OC) and organophosphorus (OP) pesticides levels in water samples collected in secondary water bodies in agricultural area planted with coffee and plantain. A descriptive cross-sectional study was carried out. A validated method for microwave-assisted extraction and gas chromatography with electron microcapture detector (MAE-GC-μECD) was used to analyze pesticide residues in samples. The determinations were based on certified reference material, Organochlorine Pesticide Mix AB #3, Canadian Drinking Organophosphorus Pesticides Mix, and pentachloronitrobenzene (ISTD) Internal Standard Mix 508.1. Pesticide residues were found in 81.3% of the samples, including OCs: 4.4'-DDT (38%), endosulfan II (19.7%), endosulfan sulfate, and endrin (11.7% and 8.8%), and others identified as 4.4'-DDE, Delta-HCB, parathion, chlorpyrifos, endrin aldehyde, heptachlor, heptachlor epoxide, endrin ketone, and methoxychlor. Parathion and/or chlorpyrifos were found in 5.8-8% of samples; the water bodies most heavily affected were those in Filandia and Quimbaya in which 100% of samples were contaminated, followed by those in Calarcá, Córdoba, Pijao, and Génova, with contamination found in over 75% of samples. The results indicated that surface waters from Quindío municipalities are contaminated with pesticide residues hazardous to human health, which are still in use despite being either restricted or prohibited.

The coffee leaf miner, Leucoptera coffeella (Guérin-Mèneville & Perrottet, 1842), probably infested coffee plants in Neotropical America during the 19th century. The species subsequently became a key pest of coffee plants in Brazil, but not in Colombia, the two main coffee producers in the region. The contrasting importance of the coffee leaf miner in Brazil and Colombia may be the result of the evolutionary and demographic history of this species. Therefore, our goal was to test two alternative hypotheses regarding the possible genetic origins of this species: 1) leaf miners in both countries share the same origin and 2) the leaf miner arrived in both countries independently from distinct sources and subsequently diversified without genetic exchange between countries. Thus, DNA sequence data of 21 populations were collected (Brazil, 16; Colombia, 5), and partial sequences of their cytochrome oxidase subunit I (COI), cytochrome b (Cytb), and the nuclear internal transcribed spacer (ITS) region were obtained to test these hypotheses. Both nuclear and mitochondrial molecular markers showed low nucleotide diversity. Analyses of molecular variance indicated higher variability within population in both concatenated mitochondrial genes and ITS region (70.57 and 84.01%, respectively). Finally, geno/haplotype networks showed each central geno/haplotypes that displayed high frequency and were distributed widely in both countries. Low-frequency geno/haplotypes were at tip positions connected to the central geno/haplotypes through single mutation steps, suggesting that the Neotropical coffee leaf miner in both Brazil and Colombia consists of a single species and exhibits a common and recent genetic origin., (© The Author(s) 2019. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)

Objectives: To determine the cardiovascular risk factors in a coffee population of the department of Caldas., Materials and Methods: A Cross-sectional study was carried out in 2015 to 964 coffee growers affiliated to la Cooperativa de Caficultores de Manizales in six sites located in the center and east of the department. After the survey, anthropometric measures and biochemical tests were performed. The results were analyzed in the Statistical Package for the Social Sciences (SPSS)., Results: The incidences in the study were: Male gender 78 %, smoking prevalence 27.2 %, background information of family members deceased before 55 years old by coronary etiology 24 %, arterial hypertension 14 %, hypercholesterolemia 56.58 %; the circumference of the waist for men 90.7 cm and for women 88.1; the body mass index average for the population was 24.7 kg/m2., Conclusions: Hypercholesterolemia was the common and most predisposing cardiovascular risk factor for the development of cardiovascular disease in this population; the early detection of risk factors allows developing promotion and preventing strategies in order to reduce their morbidity, mortality, disability and costs associated with cardiovascular disease.

Plant-soil interactions have been shown to determine plant community composition in a wide range of environments. However, how plants distinctly interact with beneficial and detrimental organisms across mosaic landscapes containing fragmented habitats is still poorly understood. We experimentally tested feedback responses between plants and soil microbial communities from adjacent habitats across a disturbance gradient within a human-modified tropical montane landscape. In a greenhouse experiment, two components of soil microbial communities were amplified; arbuscular mycorrhizal fungi (AMF) and a filtrate excluding AMF spores from the soils of pastures (high disturbance), coffee plantations (intermediate disturbance), and forest fragments (low disturbance), using potted seedlings of 11 plant species common in these habitats (pasture grass, coffee, and nine native species). We then examined their effects on growth of these same 11 host species with reciprocal habitat inoculation. Most plant species received a similar benefit from AMF, but differed in their response to the filtrates from the three habitats. Soil filtrate from pastures had a net negative effect on plant growth, while filtrates from coffee plantations and forests had a net positive effect on plant growth. Pasture grass, coffee, and five pioneer tree species performed better with the filtrate from "away" (where these species rarely occur) compared to "home" (where these species typically occur) habitat soils, while four shade-tolerant tree species grew similarly with filtrates from different habitats. These results suggest that pastures accumulate species-specific soil enemies, while coffee plantations and forests accumulate beneficial soil microbes that benefit pioneer native plants and coffee, respectively. Thus, compared to AMF, soil filtrates exerted stronger habitat and host-specific effects on plants, being more important mediators of plant-soil feedbacks across contrasting habitats., (© 2017 by the Ecological Society of America.)

Background: There are few studies occupationally profiling as well as using Geographic information system (GIS) to map human leptospirosis. There are no detailed, municipality-level, epidemiological maps in Colombia neither in South America. We developed such maps for the Coffee-triangle region, Colombia and assess some occupational issues., Methods: surveillance cases data (2007-2011) were used to estimate the annual incidence rates (cases/100,000 population) of leptospirosis to develop the first maps of disease in the 53 municipalities of the Coffee-triangle region of Colombia. GIS used was Kosmo(®) 3.1. Five thematic maps were developed according to municipalities and years. Using labor official information, analyses between agriculture (harvested areas) with disease occurrence was done (linear regression)., Results: Between 2007 and 2011, 786 cases were reported (77.8% from one department, Risaralda), for a cumulated rate of 32.18 cases/100,000 population. The highest rate was reported in the less developed municipality of one department (Pueblo Rico, Risaralda) with 1535.05 cases/100,000 population (187 cases, 2009). Armenia (Quindio department capital city), reported 23.41 cases/100,000pop (2011). In those patients with identified occupations, 33.3% were agriculture workers, finding a significant relationship between the number of cases in 2008 and the harvested area by municipality (r(2)=0.48; p=0.0083)., Conclusion: one of the 53 municipalities contributed with almost a quarter of the cases. Agriculture was significantly associated with the incidence. Use of GIS-based epidemiological maps allow to focus actions in prevention and control for risk zones for leptospirosis which still represents a significant issue in the region and Colombia, particularly in agriculture workers.

Objective: To evaluate the environmental and ecological factors associated with Leishmania transmission and vector abundance in Chaparral, Tolima-Colombia., Methods: First, we compared the ecological characteristics, abundance of phlebotomies and potential reservoir hosts in the peridomestic environment (100 m radius) of randomly selected houses, between two townships with high and low cutaneous leishmaniasis incidence. Second, we examined peridomestic correlates of phlebotomine abundance in all 43 houses in the higher risk township., Results: The high transmission township had higher coverage of forest (23%vs. 8.4%) and shade coffee (30.7%vs. 11%), and less coffee monoculture (16.8%vs. 26.2%) and pasture (6.3%vs. 12.3%), compared to the low transmission township. Lutzomyia were more abundant in the high transmission township 2.5 vs. 0.2/trap/night. Lutzomyia longiflocosa was the most common species in both townships: 1021/1450 (70%) and 39/80 (49%). Numbers of potential wild mammal reservoirs were small, although four species were found to be infected with Leishmania (Viannia) spp. In the high transmission township, the overall peridomiciliary capture rate of L. longiflocosa was 1.5/trap/night, and the abundance was higher in houses located nearer to forest (ρ = -0.30, P = 0.05)., Conclusion: The findings are consistent with a domestic transmission cycle with the phlebotomies dependent on dense vegetation near the house., (© 2012 Blackwell Publishing Ltd.)

A pattern noted in ecology is that diversity at one level begets diversity at other levels. In the case of consumers competing for similar resources, the diversity of those resources is thought to provide some degree of niche diversification in which a diverse set of consumer species can coexist. If, however, the diverse resources are not sufficiently distinct from one another, from the standpoint of the consumer species, such niche diversification will not exist. We experimentally show that a diverse array of twigs attracted 80% more species of twig-nesting ants than a monospecific collection of twigs. The specific tree species from which the twigs were derived did not explain the pattern. It appears that diversity per se at one level (twigs) creates conditions that promote diversity at another level (nesting ants).