Search

Late blight disease, caused by the plant pathogen Phytophthora infestans, is one of the major threats for tomato and potato crops. Monitoring the populations of P. infestans is important to determine if there are changes in the sensitivity to fungicides and host preference. In this study, microsatellite markers and mitochondrial haplotypes were used to assess the genotype of isolates of P. infestans collected from tomato and potato plants in Colombia. Furthermore, sensitivity to the three fungicides cymoxanil (penetrant fungicide), mefenoxam, and fluopicolide (systemic fungicides), and tomato-potato host preference, were evaluated. Mitochondrial haplotyping showed that isolates collected on tomato were from the genetic groups Ia and Ib, while isolates collected on potatoes belonged to group IIa. Microsatellite analyses showed that isolates from tomato form two groups, including the Ib mitochondrial haplotype (which is genetically close to the US-1 clonal lineage) and the Ia haplotype (related to the EC-3 lineage), whereas Colombian isolates from potato formed a separate group. Furthermore, differences in sensitivity to fungicides were observed. Eighty-one percent of the isolates tested were resistant to mefenoxam with an EC50 >10 µg ml-1. Forty-two percent of the isolates showed an intermediate resistance to cymoxanil. The EC50 values ranged between 1 and 10 µg ml-1. For fluopicolide, 90% of the isolates were sensitive, with EC50 <1 µg ml-1. Host preference assays showed that potato isolates infected both host species. Thus, isolates that infect potatoes may pose a risk for tomato crops nearby. [ABSTRACT FROM AUTHOR]

The potato psyllid, Bactericera cockerelli (Šulc), is a major pest of potato (Solanales: Solanaceae) as a vector of 'Candidatus Liberibacter solanacearum' (Lso). Bactericera cockerelli colonizes potato from noncrop host plants, yet we do not yet know which noncrop species are the primary sources of Lso-infected psyllids. The perennial weed, Physalis longifolia Nutt., is a high-quality host for B. cockerelli and Lso under laboratory conditions but has been overlooked in recent field studies as a source of Lso-infected psyllids. Our current study had four objectives: 1) determine whether P. longifolia is abundant in potato-growing regions of Washington and Idaho, 2) determine whether stands of P. longifolia harbor B. cockerelli and Lso, 3) identify the psyllid haplotypes occurring on P. longifolia, and 4) use molecular gut content analysis to infer which plant species the psyllids had previously fed upon prior to their capture from P. longifolia. Online herbaria and field searches revealed that P. longifolia is abundant in western Idaho and is present at low densities in the Columbia Basin of Washington. Over 200 psyllids were collected from P. longifolia stands in 2018 and 2019, confirming that B. cockerelli colonizes stands of this plant. Gut content analysis indicated that a proportion of B. cockerelli collected from P. longifolia had arrived there from potato. Confirmation that P. longifolia is abundant in certain potato-growing regions of the Pacific Northwest, and that B. cockerelli readily uses this plant, could improve models to predict the risk of future psyllid and Lso outbreaks. [ABSTRACT FROM AUTHOR]

This study was conducted at the Oregon State University Hermiston Agricultural Research and Extension Center, Hermiston, Umatilla County, OR, during the 2016 and 2017 potato, Solanum tuberosum L. (Solanales: Solanaceae), growing seasons. The objective was to determine the vertical distribution of hemipteran (Bactericera cockerelli Šulc, Circulifer tenellus Baker, Myzus persicae Sulzer, Macrosiphum euphorbiae Thomas, and Lygus spp.) and thysanopteran (Frankliniella occidentalis Pergande and Thrips tabaci Lindeman) potato pests using insect towers placed near potato fields. Towers were 8 m tall and secured to the ground with metal cables. In each tower, yellow sticky cards were mounted at 1.5 m intervals up to 7.6 m aboveground. Data were collected at 7-d intervals from mid-April until mid or end of August. This study showed that B. cockerelli , C. tenellus , M. persicae , Lygus spp. and both species of thrips were captured on sticky cards placed closest to the ground; in both years, as sticky card height increased, abundances decreased. In contrast, trapped M. euphorbiae numbers were not affected by sticky card height. To our knowledge, this is the first study in the lower Columbia Basin of Oregon that evaluated the vertical distribution of major potato pests. [ABSTRACT FROM AUTHOR]

Controlled inoculation studies of dispersal in situ are often not possible due to the presence of background inoculum, as is the case with late blight of potato (caused by Phytophthora infestans) in the Columbia Basin in Washington. Six disease gradients were quantified from forty-eight infrared images of infected potato fields. The mean pixel value was recorded as a proxy for disease severity. Images taken at multiple dates revealed steeper gradients at the earliest date, suggesting less background infection at that time. The aggregated disease gradients were best fit by y = 3.82*105 (x + 5.94)−2.36 modified inverse power (MIP) function and y = 424.81e−0.034x exponential function. Simulations governed by the MIP function progressed faster than those governed by the exponential function across a range of input parameters. This research demonstrates the potential to describe dispersal in systems in which controlled experiments are not possible, and it provides a tool to control late blight of potato epidemics. [ABSTRACT FROM AUTHOR]

Potato is the fourth most important crop worldwide that is used as a staple food, after rice, wheat and maize. The crop can be affected by a large number of pathogens, including fungi, oomycetes, bacteria and viruses. Diseases caused by viruses are among the most important factors contributing to reduced quality and yield of the crop. Potato mop-top virus (genus Pomovirus) induces necrotic flecks in the tuber flesh and skin of potato in temperate countries. Spongospora subterranea is the vector of PMTV. Both the virus and its vector cause disease in potato. In Colombia, PMTV has been detected throughout the country together with a novel pomo-like virus in the centre (Cundinamarca and Boyacá) and south west (Nariño) of the country. We studied the molecular and biological characteristics of this novel virus. Its genome resembles those of members of the genus Pomovirus, and it is closely related to PMTV. It induces mild systemic symptoms in Nicotiana benthamiana (mosaic, branch curling), but no symptoms in N. tabacum, N. debneyi and Chenopodium amaranticolor. The proposed name for the virus is 'Colombian potato soil-borne virus' (CPSbV). Additionally, another pomo-like virus was identified in Nariño. This virus induces severe systemic stem declining and mild mosaic in N. benthamiana. The tentative name 'soil-borne virus 2' (SbV2) is proposed for this virus. No vectors have been identified for these viruses despite several attempts. This work focused on the characterisation of CPSbV. The risk posed by these viruses if they are introduced into new territories is discussed. [ABSTRACT FROM AUTHOR]

Copyright of BIOAGRO is the property of Revista BIOAGRO and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Copyright of Revista Colombiana de Biotecnología is the property of Universidad Nacional de Colombia and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Copyright of Revista Colombiana de Biotecnología is the property of Universidad Nacional de Colombia and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Copyright of Revista Iberoamericana de Micologia is the property of Elsevier B.V. and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Abstract: The present paper investigates pesticide application types adopted by smallholder potato producers in the Department of Boyacá, Colombia. In this region, environmental, health and adverse economic effects due to pesticide mis- or over-use respectively have been observed. Firstly, pesticide application types were identified based on input-effectiveness. Secondly, their determinants of adoption were investigated. Finally suggestions were given to develop intervention options for transition towards a more sustainable pesticide use. Three application types were identified for fungicide and insecticide. The types differed in terms of input (intensity of pesticide application), effect (damage control), frequency of application, average quantity applied per application, chemical class, and productivity. Then, the determinants of different pesticide application types were investigated with a multinomial logistic regression approach and applying the integrative agent centred (IAC) framework. The area of the plot, attendance at training sessions and educational and income levels were among the most relevant determinants. The analysis suggested that better pesticide use could be fostered to reduce pesticide-related risks in the region. Intervention options were outlined, which may help in targeting this issue. They aim not only at educating farmers, but to change their social and institutional context, by involving other agents of the agricultural system (i.e. pesticide producers), facilitating new institutional settings (i.e. cooperatives) and targeting social dynamics (i.e. conformity to social norms). [Copyright &y& Elsevier]

High-throughput sequencing methods are becoming an essential tool in disease management programs. Unfortunately, the implementation of these techniques in developing countries can be hindered by a limited availability of well-trained bioinformaticians and/or high-performance computing centers that can process and analyze the data with reliability and speed. In this work we present a stand-alone plant virus detection pipeline (PVDP) optimized for the surveillance of potato viruses but also useful in other plant hosts. This open source pipeline runs under Python and includes a curated database of plant viruses in addition to an R script for presenting results as a user-friendly html report. The pipeline scripts are freely-available in GitHub, can be executed locally under LINUX, macOS or Windows, and does not require data submission to third-parties or access to high performance computing centers. The pipeline was calibrated using twelve previously obtained potato datasets and validated with new samples collected in Solanum tuberosum and S. phureja fields from eastern Antioquia (Colombia). The plant virus detection pipeline revealed high infection levels of PVY (1678.4 RPM) and lower levels of PMTV (1.2–2 RPM) infecting S. tuberosum. In S. phureja, the pipeline detected high infection levels of PVX, PVS and PVV (RPM > 2044) and lower levels of PMTV, PVY, and PYVV (RPM <82.1). Results also suggest the probable infection of S. phureja by pepino mosaic virus (PepMV) and by a putative unidentified potyvirus. Hopefully, this plant virus detection pipeline will facilitate the implementation of HTS methods in developing countries, such as Colombia, where there is an urgent need to improve the current plant and seed health standards. • We present a stand-alone plant virus detection pipeline (PVDP). • The pipeline scripts are freely-available at GitHub. • PVDP validation revealed high infection levels of PVY in S. tuberosum. • PVDP validation detected high infection levels of PVX, PVS and PVV in S. phureja. [ABSTRACT FROM AUTHOR]

Background: Meloidogyne chitwoodi commonly known as Columbia root-knot nematode or CRKN is one of the most devastating pests of potato in the Pacific Northwest of the United States of America. In addition to the roots, it infects potato tubers causing internal as well as external defects, thereby reducing the market value of the crop. Commercial potato varieties with CRKN resistance are currently unavailable. Race specific resistance to CRKN has been introgressed from the wild, diploid potato species Solanum bulbocastanum into the tetraploid advanced selection PA99N82–4 but there is limited knowledge about the nature of its resistance mechanism. In the present study, we performed histological and differential gene expression profiling to understand the mode of action of introgressed CRKN resistance in PA99N82–4 in comparison to the CRKN susceptible variety Russet Burbank. Results: Histological studies revealed that the nematode juveniles successfully infect both resistant and susceptible root tissue by 48 h post inoculation, but the host resistance response restricts nematode feeding site formation in PA99N82–4. Differential gene expression analysis shows that 1268, 1261, 1102 and 2753 genes were up-regulated in PA99N82–4 at 48 h, 7 days, 14 days and 21 days post inoculation respectively, of which 61 genes were common across all the time points. These genes mapped to plant-pathogen interaction, plant hormonal signaling, antioxidant activity and cell wall re-enforcement pathways annotated for potato. Conclusion: The introgressed nematode resistance in PA99N82–4 is in the form of both pattern-triggered immune response and effector-triggered immune response, which is mediated by accumulation of reactive oxygen species and hypersensitive response (HR). Salicylic acid is playing a major role in the HR. Polyamines and suberin (a component of the Casperian strip in roots) also play an important role in mediating the resistance response. The present study provides the first ever comprehensive insights into transcriptional changes among M. chitwoodi resistant and susceptible potato genotypes after nematode inoculation. The knowledge generated in the present study has implications in breeding for CRKN resistance in potato. [ABSTRACT FROM AUTHOR]