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The judgment and assessment of remediation effect on urban black-odor river still depend on the physical-chemical parameters and lack in ecological safety effects. A set of combined biological toxicity tests were applied to evaluate the ecological effects of one urban black-odor river before and after the remediation. The special growth rate of Chlorella vulgaris and mortality rate of Daphnia magna were used to assess acute toxicity. The Salmonella Typhimurium /Reverse Mutation Assay was applied to test the mutagenicity. The tests by C. vulgaris growth showed that there was no inhibition before and after remediation by overlying water, in contrast promoted the growth of C. vulgaris . The tests by D. magna showed slight toxicity on site 3# before remediation and nontoxic after remediation. The mutagenicity of organic extracts from overlying water at all sampling sites were positive before remediation, but were eliminated after remediation except from 3 of 4 sites on TA98 strain. The addition of the liver microsomal S9 induced the positive mutagenicity on site 4# compared to S9 absence. The results clarified the applicable and the importance of the biological toxicity tests on assessing the remediation effect and potential ecological risk of urban black-odor river.