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Summary [ABSTRACT FROM AUTHOR]

Contamination of cadmium (Cd) in paddy soil is a serious environmental problem threatening food safety in some parts of southern China, where rice grain Cd concentration often exceeds the Chinese limit (0.2 mg kg −1 ). We tested the effect of CaCO 3 liming combined with growing low Cd cultivars on Cd accumulation in rice grain in 2-year field trials. A liming model was used to predict the doses of lime required. Lime (2.25–7.5 t ha −1 ) was applied in 2016 only and the effect monitored in both 2016 and 2017. Soil pH was increased from the initial 5.5 to the target value 6.5 by 7.5 t ha −1 CaCO 3 . Liming greatly reduced CaCl 2 -extractable Cd in the rhizospheric soil. Grain Cd concentration in the control exceeded the limit by 2–5 times. Liming at 7.5 t ha −1 decreased grain Cd concentration by 70–80% in both seasons without affecting grain yield. Grain Cd concentration was below the limit in the 7.5 t ha −1 liming treatment in both seasons. Grain Cd concentration correlated closely with CaCl 2 -extractable Cd in rhizospheric soil at the grain maturing stage. Seasonal difference in grain Cd concentration was attributed to the soil water status at the grain maturing stage. Liming had no significant effect on grain arsenic concentration or speciation. A single application of CaCO 3 to raise soil pH to 6.5, combined with low Cd cultivars and delayed drainage of paddy water during late grain filling stage, was highly effective at reducing Cd accumulation in rice grain. [ABSTRACT FROM AUTHOR]

Arsenic (As) accumulation in rice grains is a risk to human health. The mechanism of transfer of As from the shoot into the grain during grain filling is unknown at present. In this study As speciation in the shoot and grains at maturity were examined, and the relationships between phosphorus (P) and As, and silicon (Si) and As were established in a wide range of cultivars grown in As contaminated field trials in Bangladesh and China. No correlations were observed between shoot and grain speciation, with the inorganic form comprising 93.0-97.0% of As in the shoot and 63.0-83.7% in the grains. The percentage of dimethylarsinic acid (DMA) was between 1.4 and 6.6% in the shoot and 14.6 and 37.0% in the grains; however, the concentrations were comparable, ranging from 0.07 to 0.26 mg kg-1 in the shoots and 0.03 to 0.25 mg kg-1 in the grains. A positive correlation was observed between shoot As and shoot Si, however, no correlation was observed between shoot Si and grain As. A significant negative correlation was observed between shoot P and grain As concentrations. These results suggest that the translocation of As into the grain from the shoots is potentially using P rather than Si transport mechanisms. The findings also indicate that inorganic As and DMA translocation to the grain differ considerably. [ABSTRACT FROM AUTHOR]

The concentration of arsenic (As) in rice grains has been identified as a risk to human health. The high proportion of inorganic species of As (As,) is of particular concern as it is a nonthreshold, class 1 human carcinogen. To be able to breed rice with low grain As, an understanding of genetic variation and the effect of different environments on genetic variation is needed. In this study, 13 cultivars grown at two field sites each in Bangladesh, India, and China are evaluated for grain As. There was a significant site, genotype, and site by genotype interaction for total grain As. Correlations were observed only between sites in Bangladesh and India, not between countries or within the Chinese sites. For seven cultivars the As was speciated which revealed significant effects of site, genotype, and site by genotype interaction for percentage Asi. Breeding low grain An cultivars that will have consistently low grain As and low Asi, over multiple environments using traditional breeding approaches maybe difficult. although CT9993-5-10-1-M, Lemont, Azucena, and Te-qing in general had low grain As across the field sites. [ABSTRACT FROM AUTHOR]

The mineral concentrations in cereals are important for human health, especially for individuals who consume a cereal subsistence diet. A number of elements, such as zinc, are required within the diet, while some elements are toxic to humans, for example arsenic. In this study we carry out genome-wide association (GWA) mapping of grain concentrations of arsenic, copper, molybdenum and zinc in brown rice using an established rice diversity panel of ∼ 300 accessions and 36.9 k single nucleotide polymorphisms (SNPs). The study was performed across five environments: one field site in Bangladesh, one in China and two in the US, with one of the US sites repeated over two years. GWA mapping on the whole dataset and on separate subpopulations of rice revealed a large number of loci significantly associated with variation in grain arsenic, copper, molybdenum and zinc. Seventeen of these loci were detected in data obtained from grain cultivated in more than one field location, and six co-localise with previously identified quantitative trait loci. Additionally, a number of candidate genes for the uptake or transport of these elements were located near significantly associated SNPs (within 200 kb, the estimated global linkage disequilibrium previously employed in this rice panel). This analysis highlights a number of genomic regions and candidate genes for further analysis as well as the challenges faced when mapping environmentally-variable traits in a highly genetically structured diversity panel.