10 results on '"Liu, Fangyuan"'
Search Results
2. Patterns and processes underlying understory songbird communities in southern China.
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Liu, Fangyuan, Yu, Xiaoping, Che, Xianli, Zhang, Qiang, Grossi, Alexandra Ashley, Zhang, Min, Wang, Zhengzhen, and Zou, Fasheng
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BIRD communities , *SONGBIRDS , *CLUSTER analysis (Statistics) , *PASSERIFORMES , *BIRD nests - Abstract
Understory bird communities, especially those comprising insectivores, are highly sensitive to forest loss and fragmentation. Currently, there is little knowledge regarding the large‐scale diversity patterns of understory bird communities, particularly in Eastern Asia. Consequently, we aimed to identify the distribution patterns of understory birds in southern China and the factors underlying these patterns. We analysed the diversity distribution patterns of taxonomic and functional α and β diversity for understory Passeriformes birds in southern China utilising cluster and ordination analyses. Subsequently, we analysed the effects of geographic distance, annual mean temperature, annual temperature range, annual mean precipitation, and annual precipitation range on diversity distribution patterns. In total, 9282 individuals belonging to 11 orders, 48 families, and 297 species were captured over 98,544 net hours, with Alcippeidae being the most abundant family in southern China. The understory bird communities of the 25 sites were categorised into six sub‐regions of the Oriental Realm (Indo‐Malayan Realm). The pattern in the distribution of taxonomic and functional β‐diversity of understory birds in southern China was consistent with zoogeographical regionalisation. Three distinct geographical groups were identified: Group 1 was located in the Min‐Guang Coast and Hainan sub‐regions; Group 2 was located in the East Hilly Plain, Southwest Mountains, and Western Mountains and Plateaus sub‐regions; and Group 3 was located in the Southern Yunnan Mountain subregion. The most critical factors related to the distribution patterns of β‐diversity were geographical distance, annual mean temperature, and annual temperature range. Our results showed that the understory bird communities of the Southwest Mountain, East Hilly Plain, and Western Mountains, and Plateaus sub‐regions were similar, as were those of the Min‐Guang Coast and Hainan sub‐regions. Our results underscore the joint roles of distance, temperature, and historical evolution in understory bird communities. [ABSTRACT FROM AUTHOR]
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- 2024
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3. A regional genomic surveillance program is implemented to monitor the occurrence and emergence of SARS-CoV-2 variants in Yubei District, China.
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Liu, Fangyuan, Deng, Peng, He, Jiuhong, Chen, Xiaofeng, Jiang, Xinyu, Yan, Qi, Xu, Jing, Hu, Sihan, and Yan, Jin
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SARS-CoV-2 , *COVID-19 , *SARS-CoV-2 Omicron variant , *WHOLE genome sequencing - Abstract
Background: In December 2022, Chongqing experienced a significant surge in coronavirus disease 2019 (COVID-19) epidemic after adjusting control measures in China. Given the widespread immunization of the population with the BA.5 variant, it is crucial to actively monitor severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variant evolution in Chongqing's Yubei district. Methods: In this retrospective study based on whole genome sequencing, we collected oropharyngeal and nasal swab of native COVID-19 cases from Yubei district between January to May 2023, along with imported cases from January 2022 to January 2023. Through second-generation sequencing, we generated a total of 578 genomes. Results: Phylogenetic analyses revealed these genomes belong to 47 SARS-CoV-2 Pango lineages. BA.5.2.48 was dominant from January to April 2023, rapidly replaced by XBB* variants from April to May 2023. Bayesian Skyline Plot reconstructions indicated a higher evolutionary rate (6.973 × 10–4 subs/site/year) for the XBB.1.5* lineage compared to others. The mean time to the most recent common ancestor (tMRCA) of BA.5.2.48* closely matched BA.2.75* (May 27, 2022). Using multinomial logistic regression, we estimated growth advantages, with XBB.1.9.1 showing the highest growth advantage (1.2, 95% HPI:1.1–1.2), followed by lineage FR.1 (1.1, 95% HPI:1.1–1.2). Conclusions: Our monitoring reveals the rapid replacement of the previously prevalent BA.5.2.48 variant by XBB and its sub-variants, underscoring the ineffectiveness of herd immunity and breakthrough BA.5 infections against XBB variants. Given the ongoing evolutionary pressure, sustaining a SARS-CoV-2 genomic surveillance program is imperative. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Changes in rhizosphere-specific enzyme activity during secondary grassland succession in the Loess Plateau, China.
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Xiao, Lie, Liu, Fangyuan, Li, Peng, Zhao, Meng, and Xue, Sha
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RHIZOSPHERE , *PLANT succession , *ENZYME kinetics , *ENZYMES , *SOIL dynamics , *ALKALINE phosphatase - Abstract
Dynamics of soil enzyme activity during plant restoration processes have been studied extensively; however, a general understanding of the rhizosphere-specific enzyme activity during plant secondary succession is limited. Rhizosphere samples were collected from the dominant and main companion species in farmlands abandoned for up to 32 years in the Loess Plateau. We determined soil chemical properties, phospholipid fatty acid (PLFA) profiles and activities of four enzymes (β-1,4-glucosidase, BG; β-1,4-N-acetylglucosaminidase, NAG; L-leucine aminopeptidase, LAP and alkaline phosphatase, AP), specific enzyme activity per soil organic carbon (SOC) and per PLFA unit. Specific BG, NAG, LAP and AP activities per SOC unit significantly decreased 77.1%, 53.2%, 83.0% and 49.2% with plant succession. Specific BG, NAG and LAP activities per PLFA unit significantly decreased 59.6%, 18.9% and 70.9% with plant succession. Furthermore, specific BG and LAP activities in the dominant species were lower than those in the companion species. Redundancy analysis revealed that variations in specific enzyme activities per SOC and per PLFA unit were explained 76.6% and 68.6% by soil chemical properties. SOC, total nitrogen (TN) and available phosphorus (aP) significantly influenced the rhizosphere-specific enzyme activities. This study improved the understanding of the element cycle at the root–soil interface under secondary succession ecosystems. [ABSTRACT FROM AUTHOR]
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- 2023
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5. Identification and pathogenicity of multidrug‐resistant Elizabethkingia miricola isolated from farmed American bullfrogs Rana catesbeiana in China with in vitro screening of herbal antimicrobial agents.
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Liu, Fangyuan, Hou, Jiahao, Yu, Fang, Gu, Zemao, and Hu, Ruixue
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BULLFROG ,ANTI-infective agents ,DNA topoisomerase II ,RIBOSOMAL DNA ,RIBOSOMAL RNA ,DRUG resistance in bacteria ,LACTAMS - Abstract
Objective: In 2021, an outbreak of an infectious disease characterized by torticollis, cataracts, and neurological disorders caused massive mortality in farmed American bullfrogs Rana catesbeiana in Hubei province, China. We identified the causal agent in this outbreak, characterized its pathogenicity, and screened candidate antimicrobial agents for future disease control. Methods: Bacterium was isolated from the diseased American bullfrogs and identified based on biochemical tests, sequence analyses (16S ribosomal RNA; DNA gyrase subunit B), and experimental challenge. Furthermore, antibiotic sensitivity of the isolated strain was detected with Kirby–Bauer paper diffusion method, and the antibacterial activity of 60 traditional Chinese herbal extracts against the isolated strain was evaluated by agar disc diffusion and broth dilution assays. Result: We identified Elizabathkingia miricola strain FB210601 as the causative agent of this disease. The isolated E. miricola strain FB210601 exhibited extensive antibiotic resistance to all tested quinolones, β‐lactam antibiotics, and aminoglycosides. Eight herbal extracts exhibited excellent antimicrobial activity against E. miricola FB210601, especially Caesalpinia sappan and Rhus chinensis, with minimal inhibitory concentrations less than 0.2 mg/mL. Additionally, the combined effects of two‐component herbal mixtures containing C. sappan or R. chinensis were greater than those of the individual extracts. Conclusion: Our results provide a reference for understanding the pathogenesis of Elizabethkingia infection in frogs. Furthermore, this study will aid in the application of herbal extracts for protection against infections caused by multidrug‐resistant Elizabathkingia in the future. Impact statementThis work studies the Elizabathkingia miricola isolated from diseased American bullfrogs in China, including bacterial identification, its sensitivity to different antibiotics and Chinese herbal extracts, which provides a scientific reference for understanding the pathogenesis of Elizabethkingia in frogs as well as for disease control and prevention. [ABSTRACT FROM AUTHOR]
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- 2023
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6. Soil biochemical index-based assessment of the effect of drought stress on the rhizosphere soil quality in three typical grass species in the Loess Plateau, China.
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Xiao, Lie, Zhao, Meng, Liu, Guobin, Li, Peng, Liu, Fangyuan, and Xue, Sha
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SOIL quality ,RHIZOSPHERE ,PHENOL oxidase ,DROUGHTS ,SOILS ,PLANT species - Abstract
Purpose: A general understanding of the influence of different plant species on soil quality improvement under drought stress is vital for planning the restoration of degraded land resources, especially in the context of global warming. Methods: In this pot study, we planted Setaria viridis, Stipa bungeana, and Bothriochloa ischaemum, which are typical grass species on abandoned farmland, succeeded by grassland, in the Loess Plateau of China, under optimal soil water conditions and under water deficit (i.e., 80% and 60% of soil field capacity, respectively). Rhizosphere soil samples of the three grass species were collected after 76 days of growth, and 21 soil properties were determined as potential indicators of soil quality. Four rhizosphere soil quality indices (SQI) were computed using linear/nonlinear scoring functions and additive/weighted additive methods by the selected minimum dataset (MDS). Results: L-leucine aminopeptidase, cellobiohydrolase, phenol oxidase, total phosphorus, available phosphorus, nitrate nitrogen, water-soluble nitrate nitrogen, and water-soluble ammonium nitrogen constituted the MDS for SQI calculation. The nonlinear weighted additive index best discriminated the effects of grass species under drought stress. Rhizosphere SQI did not significantly differ among the three grass species under optimal water conditions, but drought stress exerted a positive effect on rhizosphere SQI, which was significant for S. viridis. Conclusion: Short-term drought stress increased rhizosphere SQI, especially at the preliminary succession stages. Furthermore, the relatively stable rhizosphere SQI of plant species at the later-successional stages suggests that the later-successional plant species resisted drought stress better; this aspect warrants further investigation. [ABSTRACT FROM AUTHOR]
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- 2022
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7. Exploring Cultural Differences in Autistic Traits: A Factor Analytic Study of Children with Autism in China and the Netherlands.
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Liu, Fangyuan, Scheeren, Anke M., Grove, Rachel, Hoekstra, Rosa A., Wang, Ke, Guo, Dehua, Wang, Chongying, and Begeer, Sander
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RESEARCH , *RESEARCH methodology evaluation , *RESEARCH methodology , *CULTURAL pluralism , *T-test (Statistics) , *AUTISM in children , *QUESTIONNAIRES , *FACTOR analysis , *DESCRIPTIVE statistics , *CHI-squared test , *DATA analysis software , *EVALUATION - Abstract
Autism spectrum disorders are diagnosed globally, but recognition, interpretation and reporting may vary across cultures. To compare autism across cultures it is important to investigate whether the tools used are conceptually equivalent across cultures. This study evaluated the factor structure of the parent-reported Autism Spectrum Quotient Short Form in autistic children from China (n = 327; 3 to 17 years) and the Netherlands (n = 694; 6 to 16 years). Confirmatory factor analysis did not support the two-factor hierarchical model previously identified. Exploratory factor analysis indicated culturally variant factor structures between China and the Netherlands, which may hamper cross-cultural comparisons. Several items loaded onto different factors in the two samples, indicating substantial variation in parent-reported autistic traits between China and the Netherlands. [ABSTRACT FROM AUTHOR]
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- 2022
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8. Association between XRCC3 rs861539 Polymorphism and the Risk of Ovarian Cancer: Meta-Analysis and Trial Sequential Analysis.
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Hu, Siya, Jing, Yunnan, Liu, Fangyuan, and Han, Fengjuan
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ONLINE information services ,MEDICAL databases ,PUBLICATION bias ,STATISTICS ,HOSPITALS ,OVARIAN tumors ,META-analysis ,MEDICAL information storage & retrieval systems ,CONFIDENCE intervals ,SYSTEMATIC reviews ,GENETIC polymorphisms ,RISK assessment ,GENETIC carriers ,DESCRIPTIVE statistics ,MEDLINE ,SENSITIVITY & specificity (Statistics) ,DATA analysis software ,DATA analysis ,WHITE people ,ODDS ratio ,DISEASE risk factors - Abstract
Background. Current studies on the relationship between XRCC3 rs861539 polymorphism and ovarian cancer risk have been inconsistent. Therefore, we performed a meta-analysis to explore their association. Methods. Six electronic databases (PubMed, Embase, Web of Science, Cochrane Library, China National Knowledge Infrastructure, and China Wanfang Database) were searched for relevant studies published before December 2021. Meta-analysis, subgroup analysis, sensitivity analysis, and publication bias analysis were performed using Stata software 16.0. Trial sequential analysis (TSA) was performed using TSA 0.9.5.10 Beta software. Results. A total of 12 studies were included in 9 literatures, comprising 4,634 cases of ovarian cancer and 7,381 controls. After Bonferroni correction, the meta-analysis showed an association between XRCC3 rs861539 polymorphism and ovarian cancer risk in the heterozygote model and the dominant model (GA vs. GG: OR = 0.88 , 95 % CI = 0.81 -0.96, P = 0.003 ; GG vs. GA+AA: OR = 0.89 , 95 % CI = 0.82 -0.96, P = 0.004). In an ethnically stratified subgroup analysis, XRCC3 rs861539 was shown to reduce the risk of ovarian cancer in Caucasian in the heterozygote model and the dominant model (GA vs. GG: OR = 0.88 , 95 % CI = 0.81 -0.96, P = 0.004 ; GG vs. GA+AA: OR = 0.88 , 95 % CI = 0.81 -0.96, P = 0.004). In the control source and detection method stratified subgroup analysis, hospital-based studies and PCR-RFLP-based studies were found to increase ovarian cancer risk (GG vs. AA: OR = 1.30 , 95 % CI = 1.05 -1.62, P = 0.016 ; GG vs. AA: OR = 1.31 , 95 % CI = 1.06 -1.62, P = 0.013). Conclusion. This meta-analysis showed a significant association between XRCC3 rs861539 polymorphism and ovarian cancer risk, especially in Caucasians. Large-scale multicenter case-control studies in more different regions will be needed in the future. [ABSTRACT FROM AUTHOR]
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- 2022
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9. Coordination of water use strategies and leaf economic traits in coexisting exotic and native woody species from evergreen and deciduous broadleaf forests.
- Author
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Ni G, Zhao P, Hou Y, Bai X, Zhang L, Yuan J, Ouyang L, Liu F, Zhu L, and Zhao X
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- China, Water, Forests, Plant Leaves, Trees, Introduced Species
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The leaf economics spectrum (LES) describes the covariation of traits relevant for carbon and nutrient economy in different plant species. However, much less is known about the correlation of LES with leaf water economy, not only because some woody species do not follow the rules, but also because they are rarely tested on the widespread, non-native, fast-growing trees. We hypothesized that fast-growing exotic species that spread on the fast side of the LES coordinate their water-use strategies (WUS) to maintain rapid growth, and that the pattern of coordination differs between evergreen and deciduous forests. Using 4 exotic and 4 native species from evergreen and deciduous broadleaf forests in China, we measured 17 traits of LES and WUS and analyzed their functional roles in different species groups. Our results suggest that LES plays a more important role in the coexistence of species within a community, while WUS contributes more to the distribution of species across different regions. The multidimensional coordination of LES and WUS could better explain the growth and distribution of different plant species and shed light on the coexistence of species from different forest types, especially fast-growing woody exotics., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)
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- 2024
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10. Bibliometric and visual analyses of trends in the field of T cell exhaustion research: Findings from 2000 to 2022.
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Liu Z, Wan H, Tan Y, Li D, Huang J, Zhang C, Liu F, and Qin B
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- China, Immunotherapy, Signal Transduction, T-Cell Exhaustion, Bibliometrics
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Background: T cell exhaustion refers to a state wherein T cells become less functional as a result of their prolonged exposure to cognate antigens. A wealth of T cell exhaustion-focused research has been conducted in recent decades, transforming the current understanding of this biologically relevant process. However, there have not been any comprehensive bibliometric analyses to date focused on clarifying the T cell exhaustion-related research landscape. Here, a bibliometric analysis was thus conducted with the goal of better elucidating the current state of knowledge and emerging research hotspots in this field., Methods: The Web of Science Core Collection was searched for articles and reviews related to T cell exhaustion, with the CiteSpace and VOSviewer programs then being employed to analyze the countries, institutions, authors, references, and keywords associated with studies in this research space., Results: In total, 2676 studies were incorporated in this analysis, highlighting progressive annual increases in the number of T cell exhaustion-focused publications over the study period. These publications were affiliated with 3117 institutions in 85 countries, with the USA and China being the largest contributors to the field. Of the 18,032 authors associated with these publications, E. John Wherry exhibited the highest publication count and the greatest citation frequency. Keyword analyses indicated that immunotherapy, T cell exhaustion, and PD-1 are the dominant foci for T cell exhaustion-related research., Conclusion: These findings highlight the importance of collaborations among institutions and nations in order to further propel novel studies of T cell exhaustion. Efforts to unravel the signal transduction and transcriptional mechanisms underlying the onset of T cell exhaustion were also identified as an emerging hotspot in this field. Ultimately, these results support the pivotal status of T cell exhaustion research as a key direction for immunotherapeutic research and development efforts in the coming years., Competing Interests: Declaration of conflicting interestsThe author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
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- 2023
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