Li, Yanbing, Huang, Yuyan, Kang, Mei, Chen, Xiangyang, Liu, Liwen, Zhao, Hongmei, Chen, Zhongju, Xiao, Meng, Xu, Yingchun, Yi, Qiaolian, and Zhou, Menglan
Kodamaea ohmeri , an emerging human pathogen, caused both sporadic and nosocomial infections among immunocompromised people with high mortality. However, there is limited research on the molecular epidemiology of K. ohmeri. A total of fifty microsatellite loci were designed based on K. ohmeri type strain NRRL Y-1932 and three loci were finally selected for microsatellite analysis. Non-duplicated K. ohmeri isolates and strains of other species were collected across China as a part of CHIF-NET program for sensitivity and specificity verification. Antifungal susceptibility was determined using Sensititre YeastOne TM YO10. The three loci (P10, P11 and P26), with a cumulative discriminatory power of 0.98, exhibited a prospective specificity and reproducibility in the PCR of 92 K. ohmeri strains from different hospitals. A total of 54 microsatellite types (MT) were identified and most of them distributed sporadically. However, six strains of MT12 clustered in HZ hospital and were isolated in the same department within two months, indicating a potential outbreak. Of seven isolates exhibited MIC values of >8 mg/L for fluconazole, three isolates from LR hospital shared the same genotype of MT44. Herein, we established a set of microsatellite loci for K. ohmeri , as a rapid and specific tool for genotyping K. ohmeri , and identified several potential clusters. This study will help us better understand the molecular epidemiology of the emerging pathogen K. ohmeri. • It is the firstly established microsatellite genotyping method for K. ohmeri, with high discrimination and specificity. • Some genotypes of K. ohmeri have caused nosocomial outbreak in China, while other genotypes are very dispersed. • Some fluconazole-resistant strains share the same genotype, which should signal an alert to clinicians and microbiologists [ABSTRACT FROM AUTHOR]