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The Atacama Desert is one of the driest places on Earth, with an arid core highly adverse to the development of hypolithic cyanobacteria. Previous work has shown that when rain levels fall below ~1 mm per year, colonization of suitable quartz stones falls to virtually zero. Here, we report that along the coast in these arid regions, complex associations of cyanobacteria, archaea, and heterotrophic bacteria inhabit the undersides of translucent quartz stones. Colonization rates in these areas, which receive virtually no rain but mainly fog, are significantly higher than those reported inland in the hyperarid zone at the same latitude. Here, hypolithic colonization rates can be up to 80%, with all quartz rocks over 20 g being colonized. This finding strongly suggests that hypolithic microbial communities thriving in the seaward face of the Coastal Range can survive with fog as the main regular source of moisture. A model is advanced where the development of the hypolithic communities under quartz stones relies on a positive feedback between fog availability and the higher thermal conductivity of the quartz rocks, which results in lower daytime temperatures at the quartz-soil interface microenvironment. [ABSTRACT FROM AUTHOR]

Quartz stones are ubiquitous in deserts and are a substrate for hypoliths, microbial colonists of the underside of such stones. These hypoliths thrive where extreme temperature and moisture stress limit the occurrence of higher plant and animal life. Several studies have reported the occurrence of green hypolithic colonization dominated by cyanobacteria. Here, we describe a novel red hypolithic colonization from Yungay, at the hyper-arid core of the Atacama Desert in Chile. Comparative analysis of green and red hypoliths from this site revealed markedly different microbial community structure as revealed by 16S rRNA gene clone libraries. Green hypoliths were dominated by cyanobacteria ( Chroococcidiopsis and Nostocales phylotypes), whilst the red hypolith was dominated by a taxonomically diverse group of chloroflexi. Heterotrophic phylotypes common to all hypoliths were affiliated largely to desiccation-tolerant taxa within the Actinobacteria and Deinococci. Alphaproteobacterial phylotypes that affiliated with nitrogen-fixing taxa were unique to green hypoliths, whilst Gemmatimonadetes phylotypes occurred only on red hypolithon. Other heterotrophic phyla recovered with very low frequency were assumed to represent functionally relatively unimportant taxa. [ABSTRACT FROM AUTHOR]

Abstract: In desert environments with low water and salt contents, rapid thermal variations may be an important source of rock weathering. We have obtained temperature measurements of the surface of rocks in hyper-arid hot and cold desert environments at a rate of 1/s over several days. The values of temperature change over 1-second intervals were similar in hot and cold deserts despite a 30 °C difference in absolute rock surface temperature. The average percentage of the time dT/dt>2 °C/min was ~8±3%, >4 °C/min was 1±0.9%, and >8 °C/min was 0.02±0.03%. The maximum change over a 1-second interval was ~10 °C/min. When sampled to simulate data taken over intervals longer than 1 s, we found a reduction in time spent above the 2 °C/min temperature gradient threshold. For 1-minute samples, the time spent above any given threshold was about two orders of magnitude lower than the corresponding value for 1-second sampling. We suggest that a rough measure of efficacy of weathering as a function of frequency is the product of the percentage of time spent above a given threshold value multiplied by the damping depth for the corresponding frequency. This product has a broad maximum for periods between 3 and 10 s. [Copyright &y& Elsevier]

In most climates on Earth, biological processes control soil N. In the Atacama Desert of Chile, aridity severely limits biology, and soils accumulate atmospheric NO3-. We examined this apparent transformation of the soil N cycle using a series of ancient Atacama Desert soils (>2 My) that vary in rainfall (21 to <2 mm yr-1). With decreasing rainfall, soil organic C decreases to 0.3 kg C m-2 and biological activity becomes minimal, while soil NO3- and organic N increase to 4 kg N m-2 and 1.4 kg N m-2, respectively. Atmospheric NO3- (Δ17O = 23.0%o) increases from 39% to 80% of total soil NO3- as rainfall decreases. These soils capture the transition from a steady state, biologically mediated soil N cycle to a dominantly abiotic, transient state of slowly accumulating atmospheric N. This transition suggests that oxidized soil N may be present in an even more arid and abiotic environment: Mars. [ABSTRACT FROM AUTHOR]

The failure of Viking Lander thermal volatilization (TV) (without or with thermal degradation)-gas chromatography (GC)-MS experiments to detect organics suggests chemical rather than biological interpretations for the reactivity of the martian soil. Here, we report that TV-GC-MS may be blind to low levels of organics on Mars. A comparison between TV-GC-MS and total organics has been conducted for a variety of Mars analog soils. In the Antarctic Dry Valleys and the Atacama and Libyan Deserts we find 10–90 μg of refractory or graphitic carbon per gram of soil, which would have been undetectable by the Viking TV-GC-MS. In iron-containing soils (jarosites from Rio Tinto and Panoche Valley) and the Mars simulant (palogonite), oxidation of the organic material to carbon dioxide (CO2) by iron oxides and/or their salts drastically attenuates the detection of organics. The release of 50–700 ppm of CO2 by TV-GC-MS in the Viking analysis may indicate that an oxidation of organic material took place. Therefore, the martian surface could have several orders of magnitude more organics than the stated Viking detection limit. Because of the simplicity of sample handling, TV-GC-MS is still considered the standard method for organic detection on future Mars missions. We suggest that the design of future organic instruments for Mars should include other methods to be able to detect extinct and/or extant life. [ABSTRACT FROM AUTHOR]

The occurrence of hypolithic cyanobacteria colonizing translucent stones was quantified along the aridity gradient in the Atacama Desert in Chile, from less arid areas to the hyperarid core where photosynthetic life and thus primary production reach their limits. As mean rainfall declines from 21 to ≤2 mm year−1, the abundance of hypolithic cyanobacteria drops from 28 to <0.1%, molecular diversity declines threefold, and organic carbon residence times increase by three orders of magnitude. Communities contained a single Chroococcidiopsis morphospecies with heterotrophic associates, yet molecular analysis revealed that each stone supported a number of unique 16S rRNA gene-defined genotypes. A fivefold increase in steady-state residence times for organic carbon within communities in the hyperarid core (3200 years turnover time) indicates a significant decline in biological carbon cycling. Six years of microclimate data suggest that the dry limit corresponds to ≤5 mm year−1 rainfall and/or decadal periods of no rain, with <75 h year−1 of liquid water available to cyanobacteria under light conditions suitable for photosynthesis. In the hyperarid core, hypolithic cyanobacteria are rare and exist in small spatially isolated islands amidst a microbially depauperate bare soil. These findings suggest that photosynthetic life is extremely unlikely on the present-day surface of Mars, but may have existed in the past. If so, such microhabitats would probably be widely dispersed, difficult to detect, and millimeters away from virtually lifeless surroundings. [ABSTRACT FROM AUTHOR]

Abstract: A key question in understanding life on Mars under dry(ing) conditions is how arid soils respond to small levels of liquid water. We have conducted a series of simulated rain experiments in the hyperarid core region of the Atacama Desert. Rain amounts from 0.24 to 3.55mm were applied in the early evening to the soil. We conclude that rain events of less than 1mm do not saturate the surface, and the soil humidity at the surface remains below 100%. Rain events of 2mm or more generate free water in the pore space of the soil surface, which may be necessary to support biological activity in the soil. The crust on the surface of the soil is a strong barrier to the diffusion of subsurface moisture and subsequent evaporation. Our results show that once the relative humidity in hyperarid soils begins to fall below 100% the rate of decrease is quite rapid. Thus, the precise value assumed for the limits of life or water activity, do not appreciably change the time of water availability resulting from small desert rains. The Atacama Desert results may be applied to models of (H2O) wetting in the upper soils of Mars due to light rains, melting snow and heavy precipitating fog. [Copyright &y& Elsevier]

The article presents a report on low levels of culturable organisms and no recoverable DNA in the surface soils of the extreme arid core of the Atacama Desert, which is near the abandoned town of Yungay. This upper limit is orders of magnitude less than the concentrations of bacteria found in soils south of this Mars-like region of the Atacama. In more recent published work, the researchers have reported that below the surface, there are discrete layers with higher numbers of culturable bacteria. The researchers could not claim that there was no life in these soils on the basis of their results, and therefore they presented their data as indicating an upper limit of 100 culturable heterotrophic bacteria per gram of soil.

Abstract: The soil carbon content and its relation to site characteristics are important in evaluating current local, regional, and global soil C storage and projecting future variations in response to climate change. In this study we analyzed the concentration of organic and inorganic carbon and their relationship with in situ climatic and geological characteristics in 485 samples of surface soil and 17 pits from the hyper-arid area and 51 samples with 2 pits from the arid–semiarid region from the Atacama Desert located in Peru and Chile. The soil organic carbon (SOC) in hyperarid soils ranged from 1.8 to 50.9μgC per g of soil for the 0–0.1m profile and from 1.8 to 125.2μgC per g of soil for the 0–1m profile. The analysis of climatic (temperature and precipitation), elevation, and some geologic characteristics (landforms) associated with hyper-arid soils explained partially the SOC variability. On the other hand, soil inorganic carbon (SIC) contents, in the form of carbonates, ranged from 200 to 1500μgC per g of soil for the 0–0.1m profile and from 200 to 3000μgC per g of soil for the 0–1.0m profile in the driest area. The largest accumulations of organic and inorganic carbon were found near to arid–semiarid areas. In addition, the elemental carbon concentrations show that the presence of other forms of inorganic carbon (e.g. graphite, etc.) was negligible in these hyperarid soils. Overall, the top 1m soil layer of hyperarid lands contains ∼11.6Tg of organic carbon and 344.6Tg of carbonate carbon. The total stored carbon was 30.8-fold the organic carbon alone. To our knowledge, this is the first study evaluating the total budget carbon on the surface and shallow subsurface on ∼160,000km2 of hyperarid soils. [Copyright &y& Elsevier]

Abstract: The objective of this work was to investigate the variability of surface organic carbon within the hyper-arid Yungay region of the Atacama Desert. The fraction of Labile Organic Carbon (LOC) in these samples varied from 2 to 73μg per gram of soil with a bi-modal distribution with average content of 17±9μg LOC and 69±3μg LOC for “low” and “high” samples, respectively. Interestingly, there was no relation between organic levels and geomorphologic shapes. While organics are deposited and distributed in these soils via eolic processes, it is suggested that fog is the dynamic mechanism that is responsible for the variability and peaks in organic carbon throughout the area, where a “high” LOC content sample could be indicative of a biological process. It was determined that there was no significant difference between topological feature or geographical position within the hyper-arid samples and LOC. This very curious result has implications for the investigation of run-off gullies on the planet Mars as our work suggests a need for careful consideration of the expectation of increases in concentrations of organic materials associated with following aqueous altered topology. [Copyright &y& Elsevier]

Molecular biology and microscopy techniques were used to characterize the microbial communities inside halite evaporites from different parts of the Atacama Desert. Denaturing gradient gel electrophoresis (DGGE) analysis revealed that the evaporite rocks harbor communities predominantly made up of cyanobacteria, along with heterotrophic bacteria and archaea. Different DGGE profiles were obtained for the different sites, with the exception of the cyanobacterial profile, in which only one phylotype was detected across the three sites examined. Chroococcidiopsis-like cells were the only cyanobacterial components of the rock samples, although the phylogenetic study revealed their closer genetic affinity to Halothece genera. Gene sequences of the heterotrophic bacteria and archaea indicated their proximity to microorganisms found in other hypersaline environments. Microorganisms colonizing these halites formed microbial aggregates in the pore spaces between halite crystals, where microbial interactions occur. In this exceptional, salty, porous halite rock habitat, microbial consortia with a community structure probably conditioned by the environmental conditions occupy special microhabitats with physical and chemical properties that promote their survival. [ABSTRACT FROM AUTHOR]

Abstract: The soils of the Atacama Desert in northern Chile have long been known to contain large quantities of unusual salts, yet the processes that form these soils are not yet fully understood. We examined the morphology and geochemistry of soils on post-Miocene fans and stream terraces along a south-to-north (27° to 24° S) rainfall transect that spans the arid to hyperarid transition (21 to ∼2mm rain y−1). Landform ages are ⩾2 My based on cosmogenic radionuclide concentrations in surface boulders, and Ar isotopes in interbedded volcanic ash deposits near the driest site indicate a maximum age of 2.1My. A chemical mass balance analysis that explicitly accounts for atmospheric additions was used to quantify net changes in mass and volume as a function of rainfall. In the arid (21mmrainy−1) soil, total mass loss to weathering of silicate alluvium and dust (−1030kgm−2) is offset by net addition of salts (+170kgm−2). The most hyperarid soil has accumulated 830kgm−2 of atmospheric salts (including 260kg sulfate m−2 and 90kgchloridem−2), resulting in unusually high volumetric expansion (120%) for a soil of this age. The composition of both airborne particles and atmospheric deposition in passive traps indicates that the geochemistry of the driest soil reflects accumulated atmospheric influxes coupled with limited in-soil chemical transformation and loss. Long-term rates of atmospheric solute addition were derived from the ion inventories in the driest soil, divided by the landform age, and compared to measured contemporary rates. With decreasing rainfall, the soil salt inventories increase, and the retained salts are both more soluble and present at shallower depths. All soils generally exhibit vertical variation in their chemistry, suggesting slow and stochastic downward water movement, and greater climate variability over the past 2My than is reflected in recent (∼100y) rainfall averages. The geochemistry of these soils shows that the transition from arid to hyperarid rainfall levels marks a fundamental geochemical threshold: in wetter soils, the rate and character of chemical weathering results in net mass loss and associated volumetric collapse after 105 to 106 years, while continuous accumulation of atmospheric solutes in hyperarid soils over similar timescales results in dramatic volumetric expansion. The specific geochemistry of hyperarid soils is a function of atmospheric sources, and is expected to vary accordingly at other hyperarid sites. This work identifies key processes in hyperarid soil formation that are likely to be independent of location, and suggests that analogous processes may occur on Mars. [Copyright &y& Elsevier]

The Viking missions showed the martian soil to be lifeless and depleted in organic material and indicated the presence of one or more reactive oxidants. Here we report the presence of Mars-like soils in the extreme arid region of the Atacama Desert. Samples from this region had organic species only at trace levels and extremely low levels of culturable bacteria. Two samples from the extreme arid region were tested for DNA and none was recovered. Incubation experiments, patterned after the Viking labeled-release experiment but with separate biological and nonbiological isomers, show active decomposition of organic species in these soils by nonbiological processes. [ABSTRACT FROM AUTHOR]

Three ionizing-radiation-resistant bacterial strains (designated KR-196, KR-198 and KR-200(T)) were isolated from a sample of arid soil collected from a coastal desert in Chile. The soil sample was irradiated before serial dilution plating was performed using one-tenth-strength plate count agar. Phylogenetic analysis of the 16S rRNA gene sequences showed these organisms to represent a novel species of the genus Deinococcus, having sequence similarities of 87.3-90.8 % with respect to recognized Deinococcus species. Strains KR-196, KR-198 and KR-200(T) were aerobic and showed optimum growth at 30 degrees C and pH 6.5-8.0. The major respiratory menaquinone was MK-8. The predominant fatty acids in these strains were 16 : 1 omega 7c, 16 : 0, 15 : 1 omega 6c, 17 : 0 and 18 : 0. The DNA G+C content of strain KR-200(T) was 63.9 mol%. Strains KR-196, KR-198 and KR-200(T) were found to be resistant to >10 kGy gamma radiation. On the basis of the phylogenetic, chemotaxonomic and phenotypic data, strain KR-200(T) represents a novel species of the genus Deinococcus, for which the name Deinococcus peraridilitoris sp. nov. is proposed. The type strain is KR-200(T) (=LMG 22246(T)=CIP 109416(T)).

The Atacama Desert is one of the driest environments on Earth, and has been so for over 200,000 years. Previous reports have suggested that surprisingly low numbers of culturable bacteria, counted as biomass or species diversity, are present in Atacama sands collected from the most hyperarid regions. In previous studies, the presence of eukaryotic organisms was not discussed. In this report, we describe a method of direct plating onto rich media that resulted in culturing a range of fungi from Atacama samples. All fungi identified in this preliminary survey are spore-forming saprobes that are readily dispersed by wind, a likely mechanism that accounts for their presence in the central Atacama Desert.

The Atacama along the Pacific Coast of Chile and Peru is one of the driest and possibly oldest deserts in the world. It represents an extreme habitat for life on Earth and is an analog for life in dry conditions on Mars. We report on four years (September 1994-October 1998) of climate and moisture data from the extreme arid region of the Atacama. Our data are focused on understanding moisture sources and their role in creating suitable environments for photosynthetic microorganisms in the desert surface. The average air temperature was 16.5 degrees C and 16.6 degrees C in 1995 and 1996, respectively. The maximum air temperature recorded was 37.9 degrees C, and the minimum was -5.7 degrees C. Annual average sunlight was 336 and 335 W m(-2) in 1995 and 1996, respectively. Winds averaged a few meters per second, with strong föhn winds coming from the west exceeding 12 m s(-1). During our 4 years of observation there was only one significant rain event of 2.3 mm, which occurred near midnight local time. We suggest that this event was a rainout of a heavy fog. It is of interest that the strong El Niño of 1997-1998 brought heavy rainfall to the deserts of Peru, but did not bring significant rain to the central Atacama in Chile. Dew occurred at our station frequently following high nighttime relative humidity, but is not a significant source of moisture in the soil or under stones. Groundwater also does not contribute to surface moisture. Only the one rain event of 2.3 mm resulted in liquid water in the soil and beneath stones for a total of only 65-85 h over 4 years. The paucity of liquid water under stones is consistent with the apparent absence of hypolithic (under-stone) cyanobacteria, the only known primary producers in such extreme deserts.