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Species descriptions of most alcyonacean octocorals rely heavily on the morphology of sclerites, the calcium carbonate spicules embedded in the soft tissue. Sclerites provide taxonomic characters for species delineation but require qualitative descriptions, which introduce ambiguities in recognizing morphological features. Elliptical Fourier analysis of the outline of sclerites was used to quantify the morphology of eight species of gorgoniid octocoral in the genus Pseudopterogorgia. Sclerites from one to seven colonies of each species were compared. Scaphoids and spindles were examined separately; rods and octoradiates were excluded from the analyses because of their morphologic similarity across all species. Discriminant analysis of elliptical Fourier descriptors (EFDs) was used to determine whether the elliptical Fourier analysis could be used to identify the specimens. Sclerites were highly variable even within a single colony. Correct species assignments of individual sclerites were greater than 50% for both scaphoids and spindles. Species assignments based on averages of the EFDs for each colony approached 90%. Elliptical Fourier analysis quantifies morphological differences between species and measures colony variance in sclerite size and shape among colonies and species. Phylogenetic analysis based on EFDs did not capture monophyletic groups. The quantification of complex shapes such as sclerites provides an important tool in alpha taxonomy but may be less useful in phylogenetic analyses.

Coral reef anthozoans exhibit extensive morphological variation across and within environmental clines making it difficult to define species boundaries. The relative contributions of genetic variation and ecophenotypic plasticity to the observed phenotypic variation are unknown in most cases. The branching octocoral Pseudopterogorgia elisabethae is widely distributed throughout the Caribbean and colonies vary in appearance within and among populations. We performed genetic and morphological analyses of P.elisabethae from multiple locations within the Bahamas, as well as a Florida Keys and a distant western Caribbean location to determine the levels of genetic and morphological variation (colony form and sclerites characteristics) across populations from different sites, and assessed whether there was congruence between the genetic and morphological variation. Based on sequences of the internal transcribed spacer region of the ribosomal DNA, four groups were found that generally correspond to the geography of the Bahamas. Morphometric analysis of branch and branchlet characteristics indicated that colonies from two of the sites differed from the rest, but there was no clear correspondence between genetic and morphological variation. In general, there were no qualitative differences in the sclerites from the different populations. However, there were some differences in the dimensions of scaphoids and rods of colonies from different sites. This study has shown that P. elisabethae displays genetic and morphologic variation among some populations of the Bahamas, Florida and San Andres, Colombia. P. elisabethae is harvested in the Bahamas and these findings should be considered in management plans and conservation efforts for the species.