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This study identifies the current spatial and temporal patterns of threats to at-risk freshwater fishes within Canada. Data for 65 at-risk freshwater fishes were collated from the Committee on the Status of Endangered Wildlife in Canada Assessment and Status reports with threat calculators. Using these data, the overall threat impact level and the threat impact of the 11 categories in the threat calculator were compared for all species and separately by conservation status, which indicates their risk of extinction. These threats were also compared temporally to a study completed in 2006 and spatially between National Freshwater Biogeographic Zones. The threats of invasive species and pollution had the highest impacts, accounting for 18.9% and 16.8% of the weighted impact on at-risk freshwater fishes, respectively. Since 2006, all threats have been increasing, except for natural disasters. The Great Lakes–Upper St. Lawrence River Biogeographic Zone had significantly more at-risk freshwater fishes and overall weighted threat impact than other zones, with pollution, invasive species, and natural system modification contributing the most to the imperilment in this region. [ABSTRACT FROM AUTHOR]

Understanding the relative roles of the historical, environmental, and anthropogenic processes underlying spatial biodiversity patterns is crucial to predict the impacts of global environmental changes. We quantified the relative roles of these factors in influencing species richness of total, native, non-native, and at-risk freshwater fishes in 985 tertiary watersheds across Canada while accounting for correlations among descriptors and spatial autocorrelation. Our findings indicate differences in factors influencing richness patterns among species categories. Environmental factors related to energy availability and historical factors related to post-glacial recolonization both played roles in shaping spatial variation in native species richness. In contrast, variation in non-native species richness was largely related to human activities increasing propagule pressure and habitat disturbance, which were greater for foreign species (i.e., not native to Canada) than for translocated native species. Anthropogenic processes and environmental conditions were both important determinants of at-risk species richness. Our study emphasizes the importance of an integrated approach that simultaneously considers natural and anthropogenic processes to better predict the fish biodiversity change at the landscape scale. [ABSTRACT FROM AUTHOR]

Science-based approaches for selecting among single-species, community-, and ecosystem-based recovery plans are needed to conserve imperilled species. Selection of recovery plans has often been based on past success rates with other taxa and systems or on economic cost, but less on the ecology of the system in question. We developed a framework for selecting a recovery plan based on the distributions and ecology of imperilled and nonimperilled species across available habitat types and applied it to fishes in the Sydenham River, Ontario, Canada. We first tested whether distributions of fishes were adequately predicted by habitat features hypothesized to limit the distributions of imperilled fishes versus a broader set of habitat features known to predict fish distributions. We then tested whether imperilled species occurred in similar or disparate habitat types. For the Sydenham River, an ecosystem-based recovery plan was deemed most appropriate because imperilled species occur in disparate habitat types. We lastly provide decision criteria to facilitate applications of our framework to the selection of recovery plans for other species and systems. [ABSTRACT FROM AUTHOR]

As nonindigenous species are a major threat to global biodiversity, cost-effective management requires identification of areas at high risk of establishment. Here we predict suitable environments of 14 high-profile species of nonindigenous snakehead (Channidae) and Asian carp (Cyprinidae) species in North America based upon ecological niche modelling and compare the driving environmental variables for the two fish groups. Snakeheads distributions were correlated with thermal factors, whereas those of Asian carps were related mainly to precipitation. Predicted suitable ranges for these nonindigenous species can be divided into three main areas: Mexico and the southern United States (five species); Mexico and the United States up to ~35 °N (three species); and most of Mexico, continuous United States, and southern Canada (six species). For the province of Ontario, we combined the number and location of aquarium stores and live fish markets with predicted areas of suitable environments to identify areas at risk of introduction and establishment. We identified several watersheds draining into northwestern Lake Ontario as having the highest risk, highlighting the increased predictive value of this approach. [ABSTRACT FROM AUTHOR]

Climate change will ultimately affect the supply and quality of freshwater lakes and rivers throughout the world. This study examines the potential impacts of climate change on freshwater fish distributions in Canada. Climate normals data (means from 1961 to 1990) from Environment Canada were used to map current climate found throughout the tertiary watersheds of Canada. Logistic regressions based on these climate data were used to develop predictive presence-absence equations for (a) common commercially and recreationally important species and (b) an Arctic freshwater species and a freshwater fish species of conservation significance listed by the Committee on the Status of Endangered Wildlife (COSEWIC). The Canadian Centre for Climate Modelling and Analysis Global Coupled Model 2(IS92a) provided forecasts of Canada's climate in 2020 and 2050. The data from this scenario and the logistic regressions provided a ready framework for predicting the potential distributions of the fishes. Physical and ecological barriers would have to be overcome for the distribution of these species to actually change in response to climate change. Generally, coldwater species may be extirpated from much of their present range while cool and warm-water species may expand northward. Species that are limited to the most southern regions of the country may expand northwards. A conceptual framework for assessing potential climate change impacts on fishes and the variety of management strategies required to deal with these impacts are discussed. Our forecasts demonstrate the need for climate change assessments in species at risk as well as for common species. [ABSTRACT FROM AUTHOR]

Human activity can put non‐game fishes at higher risk of extinction because of inappropriate management action. Eastern sand darter (Ammocrypta pellucida), a small benthic fish classified as threatened across much of its northern range, inhabits increasingly fragmented sandy habitats and, as a non‐game fish, may be easily overlooked in conservation efforts. In this study, the authors use genotype data from nine microsatellite loci and cytochrome oxidase I (COI) sequencing data across its northern native range to re‐assess genetic structure and to characterize a newly discovered, geographically disjunct population. Previous microsatellite marker analyses had identified seven distinct population genetic clusters across the region sampled; the analysis of this study showed that the newly discovered population (West Lake, Ontario) exhibits a divergent structure. COI haplotype analysis suggests that a single haplotype recolonized the Great Lakes and surrounding water bodies after the Wisconsinan glacial period, and subsequent fluctuation in water levels and habitat fragmentation resulted in divergence of genetic clusters. Although the novel West Lake population has a common ancestral source with other populations in the broader region, its divergent genetic signature merits its consideration as a separate conservation unit. The analyses of this study highlight the potential conservation implications of the discovery of new populations, particularly those of at‐risk species, even within a region that has been genetically well characterized. [ABSTRACT FROM AUTHOR]

Similar to many freshwater ecosystems, the Laurentian Great Lakes of North America have undergone numerous anthropogenic stressors resulting in considerable loss of biodiversity and habitat. Among Great Lakes fishes, the coregonine sub-family has endured the most extensive declines, including extinction of several species (Coregonus johannae, C. alpenae, and C. kiyi orientalis) and at least 10 instances of local extirpations of other species (C. nigripinnis, C. reighardi, C. zenithicus, C. hoyi, and C. artedi) across all 5 lakes, much of which occurred prior to the 1960s owing to overfishing, interactions with non-indigenous species, and habitat loss. Despite these declines, no federal-, provincial-, or state-mandated actions were ever implemented to conserve coregonine diversity, potentially because so much of the coregonine declines occurred prior to the enactment of federal conservation legislation. Possible explanations for inaction since enactment of that legislation include insufficient data on biological vulnerability or threats, unresolved taxonomy, and limited support from the fishery management agencies and their stakeholders prior to the 2000s. In recent decades, however, several fishery management agencies have undertaken efforts to re-introduce coregonine diversity. These efforts helped lead to development of a science-based framework to restore coregonines that was universally endorsed by fishery managers representing eight U.S. states, four U.S. tribal organizations, and the province of ON, Canada, in May 2018. The basin-wide framework is based on principles of conservation biology and adaptive management. We describe details of its key steps, including planning, restoring, and evaluating, while also describing recent implementation efforts to develop methods, improve available resources, and enhance coordination across the basin. Although our paper describes a regional effort to restore native coregonines, our adaptive-management approach could be used by other multi-agency stakeholders seeking to conserve or restore native fishes. [ABSTRACT FROM AUTHOR]

Detection of invasive species is critical for management but is often limited by challenges associated with capture, processing and identification of early life stages. DNA metabarcoding facilitates large‐scale monitoring projects to detect establishment early. Here, we test the use of DNA metabarcoding to monitor invasive species by sequencing over 5000 fishes in bulk ichthyoplankton samples (larvae and eggs) from four rivers of ecological and cultural importance in southern Canada. We were successful in detecting species known from each river and three invasive species in two of the four rivers. This includes the first detection of early life‐stage rudd in the Credit River. We evaluated whether sampling gear affected the detection of invasive species and estimates of species richness, and found that light traps outperform bongo nets in both cases. We also found that the primers used for the amplification of target sequences and the number of sequencing reads generated per sample affect the consistency of species detections. However, these factors have less impact on detections and species richness estimates than the number of samples collected and analysed. Our analyses also show that incomplete reference databases can result in incorrectly attributing DNA sequences to invasive species. Overall, we conclude that DNA metabarcoding is an efficient tool for monitoring the early establishment of invasive species by detecting evidence of reproduction but requires careful consideration of sampling design and the primers used to amplify, sequence and classify the diversity of native and potentially invasive species. [ABSTRACT FROM AUTHOR]

Environmental DNA (eDNA) monitoring methods have played a significant role in improving fisheries management decisions. Yet, their impact to date has been rather limited in Canada, where eDNA sampling and analyses are only beginning to be used to inform management and conservation decisions, practices, and policies. Studies investigating hurdles to the incorporation of eDNA evidence into fisheries management decisions generally focus on technical challenges (i.e., risks of false-positive and false-negative detections). We set out to identify challenges that eDNA researchers and conservation practitioners must overcome to fully unlock the benefits of eDNA sampling for fish management in the Canadian context. We discuss aspects of the broad and heterogeneous geography, preponderance of regions located far from densely populated areas, complex political landscape, and cultural diversity of Canada that may complicate the design of reliable eDNA monitoring tools or restrict their use if not adequately addressed. To advocate for the wider use of eDNA sampling, we outline a number of action items that would facilitate the broad adoption of eDNA sampling as a monitoring tool at the Canadian scale. [ABSTRACT FROM AUTHOR]

More than 15 years have passed since Canada's Species at Risk Act was enacted. To evaluate scientific progress in support of the Act, we identified research accomplishments up to 2017 for imperilled aquatic species in the Great Lakes – St. Lawrence River basin based on recovery documents and an expert survey, spanning 1182 activities across 68 research topics for 45 fish and mussel species. Greatest progress was observed for population ecology (38% of activities with major progress) and habitat science (28%), with comparably less progress on threats (mechanisms and impacts; 19%) and recovery (threat mitigation and reintroduction; 21%). As a result of lagging progress, threat and reintroduction topics were prioritized for a Canadian Freshwater Species at Risk Research Network (SARNET; 2017–2020), which focused on addressing key knowledge gaps with novel applications. This special issue outlines the SARNET projects, which span novel field, laboratory, and analytical activities. Continued research investment into novel and existing approaches is necessary to advance scientific achievements for fishes and mussels in support of the Species at Risk Act in Canada. [ABSTRACT FROM AUTHOR]

Effective conservation requires that species recovery measures are informed by rigorous scientific research. For imperilled freshwater fishes and mussels in Canada, numerous research gaps exist, in part owing to the need for specialized research methods. The Canadian Freshwater Species at Risk Research Network (SARNET) was formed and identified or implemented approaches to address current research gaps, including (1) captive experimental research populations, (2) nonlethal methods for estimating abundance and distribution, (3) nonlethal field methods to measure life-history parameters, (4) species distribution models informed by co-occurring species, (5) conservation physiology to inform habitat and threat science, (6) evidence syntheses to evaluate threats and recovery measures, (7) disease-transmission models to understand mussel–host relationships, (8) experimental mesocosms and manipulative experiments to evaluate key habitat stressors, (9) threat and hazard models for predictive applications, and (10) rigorous evaluation of surrogate species. Over a dozen threat- and recovery-focused SARNET research applications are summarized, demonstrating the value of a coordinated research program between academics and government to advance scientific research on, and to support the recovery of, imperilled freshwater species. [ABSTRACT FROM AUTHOR]

Presents a study which featured a broad analysis of freshwater fish species biodiversity in relation to environmental and stress metrics throughout Canada. Materials and methods used; Comparative regional assessment of biodiversity and environmental index; Combination of indices for regional assessment.

Many of the watersheds in southern Ontario have been highly modified to facilitate the removal of surface water from agricultural fields. These modified streams are often classed as municipal drains and are subject to periodic drain maintenance under the Drainage Act. Municipal (agricultural) drain maintenance involves removal of built-up sediment and associated aquatic vegetation, and may also include channelization of the stream and removal of riparian vegetation. Despite the periodic disturbance due to drain maintenance, agricultural drains are home to many fish species in southern Ontario, including species at risk. Beaver Creek, a tributary of the Niagara River in southwestern Ontario, is classed as a municipal drain and is home to a population of Grass Pickerel (Esox americanus vermiculatus), a species at risk in Canada. In the fall of 2011 a section of Beaver Creek was subjected to drain maintenance. In an effort to mitigate potential harmful effects of the drainage activities on the Grass Pickerel population, reconstruction incorporating natural stream channel design features was also implemented. The fish community of Beaver Creek was sampled in the impacted reach where maintenance occurred, an adjacent control reach that was not subject to maintenance, and a downstream reach where the two converged, from 2009-2013 and again in 2015. A series of before-after-control-impact (BACI) analyses were conducted to determine the effect of maintenance and reconstruction activities on the Grass Pickerel population and the physical and chemical habitat in Beaver Creek. BACI analyses were also conducted on three time scales to determine the most effective monitoring time frame for future drainage projects. Results of this study indicate that reconstruction incorporating natural stream channel design features had a positive impact on the Grass Pickerel catch per unit effort in the newly created pools and mitigated the effects of channelization on habitat characteristics such as stream velocity. The diversity of the stream fish community was not affected by the maintenance and reconstruction activities. Changing the amount of time that monitoring is conducted can influence the ability to detect effects of drainage activities. In this study, monitoring for at least three years prior to the drainage works, along with post-project monitoring of at least four years following was required to determine the effects of drainage activities. [ABSTRACT FROM AUTHOR]

Fishes are among the most threatened taxa in Canada with over 70 species, subspecies, and (or) designatable units presently listed for protection under the Species at Risk Act (SARA). Protecting these species requires a diverse set of strategies based on the best-available data and information. One approach identified under SARA and in Canadian federal recovery strategies for improving the status of SARA-listed fishes is species reintroduction, which involves the release of individuals into areas from which they have been extirpated with the goal of re-establishing self-sustaining populations. The success of reintroduction relies on a comprehensive understanding of species ecology and life history, with considerations around population genetics and genomics. However, SARA-listed species are some of the most poorly known species in Canada due to their rarity and relative lack of research investment prior to the enactment of SARA. As a result, SARA-listed species have the most to lose if reintroduction activities are not carefully researched, planned, and executed. Therefore, the purpose of this review is to present an accessible summary on the state of reintroduction science for SARA-listed fishes in Canada with the hope of motivating future research to support reintroduction activities. We focus our review on 14 SARA-listed freshwater or anadromous fishes identified as candidates for reintroduction in federal recovery strategies. We follow the species-specific summaries with guidance on how basic research questions in population ecology, habitat science, and threat science provide a critical foundation for addressing knowledge gaps in reintroduction science. Subsequently, we identify the importance of genetic and genomic techniques for informing future research on the reintroduction of SARA-listed species. We conclude with recommendations for active, experimental approaches for moving reintroduction efforts forward to recover Canadian fishes. [ABSTRACT FROM AUTHOR]

Knowledge of Canada’s lakes is needed to manage environmental stresses. Lake inventory and lake feature databases were used to build a national impact assessment template and assess regional typology. There are ~910 400 lakes with area ≥ 0.1 km2 (10 ha), 37% of the Earth’s total. Lake features (number of lakes by size class, maximum depth, mean–maximum depth ratio, Secchi depth, pH, and total dissolved solids) were modeled regionally by secondary watershed (SWS) using linear regression models. Lake trout (Salvelinus namaycush) occurrence was analyzed as a cofactor to highlight regional links between lake characteristics and aquatic biota. Significant (R2 from 0.231 to 0.492) regional models were obtained using area or maximum depth, lake trout occurrence, and their cross products as covariates. Analyses of fitted SWS coefficients showed that ecozones were a better predictor of lake characteristics than primary watersheds. The national typology was consistent with previous regional assessments. The regional models were used to estimate the number, area, and volume of lake trout lakes by size class and ecozone. There are ~66 500 lake trout lakes covering ~3 510 000 km2 primarily on Boreal and Taiga Shield areas. Regional lake resource models will enable national assessment of stresses such as climate change and invasive species. [ABSTRACT FROM AUTHOR]