1. Distribution of SARS-CoV-2 Variants in a Large Integrated Health Care System - California, March-July 2021.
- Author
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Malden DE, Bruxvoort KJ, Tseng HF, Ackerson B, Choi SK, Florea A, Tubert J, Takhar H, Aragones M, Hong V, Talarico CA, McLaughlin JM, Qian L, and Tartof SY
- Subjects
- Adolescent, Adult, Aged, COVID-19 epidemiology, California epidemiology, Child, Female, Humans, Male, Middle Aged, Young Adult, COVID-19 diagnosis, COVID-19 virology, Delivery of Health Care, Integrated, SARS-CoV-2 isolation & purification
- Abstract
Data from observational studies demonstrate that variants of SARS-CoV-2, the virus that causes COVID-19, have evolved rapidly across many countries (1,2). The SARS-CoV-2 B.1.617.2 (Delta) variant of concern is more transmissible than previously identified variants,* and as of September 2021, is the predominant variant in the United States.
† Studies characterizing the distribution and severity of illness caused by SARS-CoV-2 variants, particularly the Delta variant, are limited in the United States (3), and are subject to limitations related to study setting, specimen collection, study population, or study period (4-7). This study used whole genome sequencing (WGS) data on SARS-CoV-2-positive specimens collected across Kaiser Permanente Southern California (KPSC), a large integrated health care system, to describe the distribution and risk of hospitalization associated with SARS-CoV-2 variants during March 4-July 21, 2021, by patient vaccination status. Among 13,039 SARS-CoV-2-positive specimens identified from KPSC patients during this period, 6,798 (52%) were sequenced and included in this report. Of these, 5,994 (88%) were collected from unvaccinated persons, 648 (10%) from fully vaccinated persons, and 156 (2%) from partially vaccinated persons. Among all sequenced specimens, the weekly percentage of B.1.1.7 (Alpha) variant infections increased from 20% to 67% during March 4-May 19, 2021. During April 15-July 21, 2021, the weekly percentage of Delta variant infections increased from 0% to 95%. During March 4-July 21, 2021, the weekly percentage of variants was similar among fully vaccinated and unvaccinated persons, but the Delta variant was more commonly identified among vaccinated persons then unvaccinated persons overall, relative to other variants. The Delta variant was more prevalent among younger persons, with the highest percentage (55%) identified among persons aged 18-44 years. Infections attributed to the Delta variant were also more commonly identified among non-Hispanic Black persons, relative to other variants. These findings reinforce the importance of continued monitoring of SARS-CoV-2 variants and implementing multiple COVID-19 prevention strategies, particularly during the current period in which Delta is the predominant variant circulating in the United States., Competing Interests: All authors have completed and submitted the International Committee of Medical Journal Editors form for disclosure of potential conflicts of interest. The following authors received funding for work unrelated to this study: Katia J. Bruxvoort (Dynavax Technologies, Gilead Sciences Inc., GlaxoSmithKline plc., Moderna, Inc., Pfizer Inc., and Seqirus); Bradley Ackerson (Dynavax Technologies, GlaxoSmithKline plc., Moderna, Inc., Pfizer Inc., and Seqirus); Ana Florea (GlaxoSmithKline plc., Moderna, Inc., Pfizer Inc., and Gilead Sciences Inc.); Julia Tubert (Moderna, Inc.); Harpreet Takhar (ALK, GlaxoSmithKline plc., Moderna, Inc., Pfizer Inc., and Wellcome); Sara Y. Tartof (Genentech, Gilead Sciences Inc., GlaxoSmithKline plc., Pfizer Inc., Spero Therapeutics, and Wellcome); and Lei Qian (Dynavax Technologies, Genentech, GlaxoSmithKline plc., and Moderna, Inc.). Hung Fu Tseng received funding for work unrelated to this study from GlaxoSmithKline plc. and Moderna, Inc. and served on advisory boards for Janssen (Johnson & Johnson) and Pfizer Inc. John M. McLaughlin holds stock and stock options in Pfizer Inc. Carla A. Talarico is a shareholder in Moderna, Inc. No other potential conflicts of interest were disclosed.- Published
- 2021
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