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Metagenomic data sets were generated from samples collected along a coastal to open ocean transect between Southern California Bight and California Current waters during a seasonal upwelling event, providing an opportunity to examine the impact of episodic pulses of cold nutrient-rich water into surface ocean microbial communities. The data set consists of ∼5.8 million predicted proteins across seven sites, from three different size classes: 0.1-0.8, 0.8-3.0 and 3.0-200.0 μm. Taxonomic and metabolic analyses suggest that sequences from the 0.1-0.8 μm size class correlated with their position along the upwelling mosaic. However, taxonomic profiles of bacteria from the larger size classes (0.8-200 μm) were less constrained by habitat and characterized by an increase in Cyanobacteria, Bacteroidetes, Flavobacteria and double-stranded DNA viral sequences. Functional annotation of transmembrane proteins indicate that sites comprised of organisms with small genomes have an enrichment of transporters with substrate specificities for amino acids, iron and cadmium, whereas organisms with larger genomes have a higher percentage of transporters for ammonium and potassium. Eukaryotic-type glutamine synthetase (GS) II proteins were identified and taxonomically classified as viral, most closely related to the GSII in Mimivirus, suggesting that marine Mimivirus-like particles may have played a role in the transfer of GSII gene functions. Additionally, a Planctomycete bloom was sampled from one upwelling site providing a rare opportunity to assess the genomic composition of a marine Planctomycete population. The significant correlations observed between genomic properties, community structure and nutrient availability provide insights into habitat-driven dynamics among oligotrophic versus upwelled marine waters adjoining each other spatially. [ABSTRACT FROM AUTHOR]

Abstract: We analyzed D/H ratios of common terrestrial leaf wax lipids in a 1400year sediment core from the Santa Barbara Basin (SBB) to test whether they accurately record terrestrial climate in Southern California. The D/H ratios of long chain n-alkanes vary substantially with depth, but are poorly correlated with other terrestrial climate proxies. Interference from fossil hydrocarbons may be at least partly responsible. Long chain n-alkanoic acids exhibit nearly constant downcore D/H ratio values. This constancy in the face of known climatic shifts presumably reflects a substantial residence time for leaf wax compounds in terrestrial soil and/or on the basin flanks. Alternatively, the isotopic composition of meteoric waters in Southern California may not covary with climate, particularly aridity. However, the δD values of n-C22 and n-C24 fatty acids, commonly attributed to terrestrial aquatic sources, are partially correlated with Southern California winter Palmer Drought Severity Index, a tree ring-based climatic proxy (R 2 0.25; p <0.01) on multi-centennial scales with an inferred ca. 215year time lag. The improved correlation of these biomarkers can be explained by the fact that they are not stored in terrestrial soil nor are subject to interference from fossil hydrocarbons. Our study indicates that the SBB is unlikely to preserve high resolution leaf wax D/H records that can serve as quantitative paleoclimate proxies, though some qualitative information may be retained. More generally, the sources of lipids in marginal marine basins need to be carefully evaluated prior to attempting paleoclimate reconstruction based on the leaf wax D/H proxy. [ABSTRACT FROM AUTHOR]