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The Amazon rainforest covers more than 60% of Bolivia’s lowlands, providing habitat for many endemic and threatened species. Bolivia has the highest rates of deforestation of the Amazon biome, which degrades and fragments species habitat. Anthropogenic habitat changes could be exacerbated by climate change, and therefore, developing relevant strategies for biodiversity protection under global change scenarios is a necessary step in conservation planning. In this research we used multi-species umbrella concept to evaluate the degree of habitat impacts due to climate and land cover change in Bolivia. We used species distribution modeling to map three focal species (Jaguar, Lowland Tapir and Lesser Anteater) and assessed current protected area network effectiveness under future climate and land cover change scenarios for 2050. The studied focal species will lose between 70% and 83% of their ranges under future climate and land-cover change scenarios, decreasing the level of protection to 10% of their original ranges. Existing protected area network should be reconsidered to maintain current and future biodiversity habitats. [ABSTRACT FROM AUTHOR]