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Sphaerellopsis species are putative hyperparasites of rust fungi and may be promising biological control agents (BCA) of rust diseases. However, few detailed studies limit potential BCA development in Sphaerellopsis. Here, we explored the biogeography, host-specificity, and species diversity of Sphaerellopsis and examined the early infection stage of one species, S. macroconidialis, to infer its trophic status. We randomly screened 5,621 rust specimens spanning 99 genera at the Arthur Fungarium for the presence of Sphaerellopsis. We identified 199 rust specimens infected with Sphaerellopsis species on which we conducted morphological and multi-locus phylogenetic analyses. Five Sphaerellopsis species were recovered, infecting a total of 122 rust species in 18 genera from 34 countries. Sphaerellopsis melampsorinearum sp. nov. is described as a new species based on molecular phylogenetic data and morphological features of the sexual and asexual morphs. Sphaerellopsis paraphysata was the most commonly encountered species, found on 77 rust specimens, followed by Sphaerellopsis macroconidialis on 56 and S. melampsorinearum on 55 examined specimens. The type species, Sphaerellopsis filum, was found on 12 rust specimens and Sphaerellopsis hakeae on a single specimen. We also recovered and documented for the first time, the sexual morph of S. macroconidialis, from a specimen collected in Brazil. Our data indicate that Sphaerellopsis species are not host specific and furthermore that most species are cosmopolitan in distribution. However, S. paraphysata is more abundant in the tropics, and S. hakeae may be restricted to Australia. Finally, we confirm the mycoparasitic strategy of S. macroconidialis through in-vitro interaction tests with the urediniospores of Puccinia polysora. Shortly after germination, hyphae of S. macroconidialis began growing along the germ tubes of P. polysora and coiling around them. After 12 days of co-cultivation, turgor loss was evident in the germ tubes of P. polysora, and appressorium-like structures had formed on urediniospores. The interaction studies indicate that Sphaerellopsis species may be more effective as a BCA during the initial stages of rust establishment. [ABSTRACT FROM AUTHOR]

Summary: Contemporary climate change will push many tree species into conditions that are outside their current climate envelopes. Using the Eucalyptus genus as a model, we addressed whether species with narrower geographical distributions show constrained ability to cope with warming relative to species with wider distributions, and whether this ability differs among species from tropical and temperate climates.We grew seedlings of widely and narrowly distributed Eucalyptus species from temperate and tropical Australia in a glasshouse under two temperature regimes: the summer temperature at seed origin and +3.5°C. We measured physical traits and leaf‐level gas exchange to assess warming influences on growth rates, allocation patterns, and physiological acclimation capacity.Warming generally stimulated growth, such that higher relative growth rates early in development placed seedlings on a trajectory of greater mass accumulation. The growth enhancement under warming was larger among widely than narrowly distributed species and among temperate rather than tropical provenances. The differential growth enhancement was primarily attributable to leaf area production and adjustments of specific leaf area.Our results suggest that tree species, including those with climate envelopes that will be exceeded by contemporary climate warming, possess capacity to physiologically acclimate but may have varying ability to adjust morphology. [ABSTRACT FROM AUTHOR]

The Australian continent has experienced progressive aridification since the Miocene, spurring recent radiations of arid-adapted lineages and the likely decline of mesic biotic groups. While examples of the former have been relatively well-documented, post-Miocene declines of non-arid sclerophyllous floras are less well understood. Here, we present a well-sampled time-calibrated nuclear phylogeny (140 accessions representing 60/65 species) of an Australian plant genus (Cryptandra Sm.: Rhamnaceae) and using ancestral range reconstructions and diversification analyses, elucidate its evolutionary history through space and time. We used high-throughput sequencing to recover 30 orthologous nuclear loci and BioGeoBEARS to infer ancestral areas. We show that the present-day distribution of Cryptandra can be explained by multiple vicariance events followed by in situ diversification with little exchange between regions. All diversification models show a speciation rate decline in Cryptandra after its radiation in the Miocene (c. 23 Mya). This coincides with aridification episodes across Australia and indicates that diversification of this genus has been negatively affected by the expansion of aridity. We also show that there were no significant differences in diversification rates between spinescent and non-spinescent Cryptandra lineages, suggesting that spinescent lineages may be the legacies of selection from extinct megaherbivores. [ABSTRACT FROM AUTHOR]

Examination of a fossil from a Miocene Konservat-Lagerstätte (c. 11–16 Mya) from Australia shows it to be an astioid jumping spider that is here described as Simaetha sp. indet. Fossilization in the iron oxide–hydroxide mineral goethite led to a high-fidelity preservation of not only the exterior, but of the pharyngeal plate and a neuropile in the cephalothorax. The discovery of the fossil supports the molecular-based hypothesis that the Late Oligocene/Early Miocene radiation of astioid genera occurred in Australasia. Modern Asian genera then would be the result of northward migrations from Australia rather than a movement in the other direction. Biogeographically, the Miocene Simaetha fits within the predicted bioclimatic distribution of the genus today, though the bioclimatic requirements of the fossil species are now found in eastern Queensland rather than in central New South Wales. Simaetha , it seems has retained its original bioclimatic profile for 15 Myr, even though climatic and ecological conditions in Australia have changed significantly. The fossil record now shows the independent evolution of modern genera during the Early Miocene in at least five different salticid lineages on two continents. These salticid radiations occurred at a time of planet-wide, rapid climatic and ecological change. [ABSTRACT FROM AUTHOR]

Soil microbial diversity mediates a wide range of key processes and ecosystem services influencing planetary health. Our knowledge of microbial biogeography patterns, spatial drivers and human impacts at the continental scale remains limited. Here, we reveal the drivers of bacterial and fungal community distribution in Australian topsoils using 1384 soil samples from diverse bioregions. Our findings highlight that climate factors, particularly precipitation and temperature, along with soil properties, are the primary drivers of topsoil microbial biogeography. Using random forest machine‐learning models, we generated high‐resolution maps of soil bacteria and fungi across continental Australia. The maps revealed microbial hotspots, for example, the eastern coast, southeastern coast, and west coast were dominated by Proteobacteria and Acidobacteria. Fungal distribution is strongly influenced by precipitation, with Ascomycota dominating the central region. This study also demonstrated the impact of human modification on the underground microbial community at the continental scale, which significantly increased the relative abundance of Proteobacteria and Ascomycota, but decreased Chloroflexi and Basidiomycota. The variations in microbial phyla could be attributed to distinct responses to altered environmental factors after human modifications. This study provides insights into the biogeography of soil microbiota, valuable for regional soil biodiversity assessments and monitoring microbial responses to global changes. [ABSTRACT FROM AUTHOR]

The genera Xerobiotus and Pseudohexapodibius are xerophilic and characterized by reduced appendages and claws as adaptations to move between small interstices. To increase the knowledge of their biodiversity, biogeography and phylogeny, several specimens from European countries and Australia were analysed using an integrative approach, i.e. morphological, karyological and molecular studies (18S, 28S, cox1 , cytb and ITS2). The phylogenetic position of Xerobiotus with respect to the three evolutionary lineages of Macrobiotus remains unchanged with respect to what was previously identified in the phylogeny of Macrobiotidae. The following new Xerobiotus species are described: Xerobiotus litus sp. nov. Xerobiotus arenosum sp. nov. and Xerobiotus reductus sp. nov. It is proposed that Macrobiotus naginae should be transferred to Xerobiotus (Xerobiotus naginae comb. nov.). Pseudohexapodibius degenerans clusters within Xerobiotus and shares morphological and genetic characters with this genus. Some discrepancies between genetic and phenotypic data are found among the analysed species. Even between the results obtained with analysed genes disagreements are found, with cox1 and cytb generally agreeing with phenotypic results more than ITS2. Genotypic and phenotypic data are useful tools for species identification, but they have to be evaluated critically to obtain reliable results. [ABSTRACT FROM AUTHOR]

The biogeographical history of many lineages within the Lauraceae remains poorly known because of the difficulty of assigning macrofossils to living genera, poor pollen preservation, and the absence of sufficiently resolved or well‐supported phylogenies. Here, we utilize plastid genome sequencing to reinvestigate the phylogenetic and biogeographic history of trees in the tribe Cryptocaryeae, an important component of broad‐leaved forests worldwide, with around 800 species that rely on vertebrate frugivores to disperse their seeds. A new time‐calibrated phylogeny with high support for 176 species was used to infer the biogeographic history and speciation rates based on inferences of BAMM analyses. A monophyletic Cryptocaryeae with Aspidostemon, Beilschmiedia, Cryptocarya, Dahlgrenodendron, and Eusideroxylon clades was confirmed. The five clades of Cryptocaryeae were estimated to share a common ancestor in tropical Africa or Asia in the Early Cretaceous around 123 Ma. The Beilschmiedia and Cryptocarya clades were estimated to have originated in South America around 66 Ma. Extant subclades of the Beilschmiedia clade could colonize Australia by 35 Ma and extant subclades of the Cryptocarya clade could colonize Australia by 42 Ma. Diversification rates of the Beilschmiedia clade accelerated 14 and 12 Ma after its origin and diversification rates of the Cryptocarya clade accelerated 18 Ma after its origin. Over 45% extant Cryptocaryeae species originated in the three periods of accelerated differentiation in the Miocene of Asia and Australia. Long‐distance dispersal has had a major influence on biogeography, with dispersal to Asia likely occurring seven times, Zealandia six times, America three times, Australia three times, Africa twice, and Oceania at least once. Over 70% extant Cryptocaryeae species which diverged before the Quaternary grow in the Southern Hemisphere, while 90% extant Cryptocaryeae species which diverged in the Quaternary grow in the Northern Hemisphere. The Cryptocaryeae originated in and diversified with the first angiosperm‐dominated broad‐leaved evergreen forests, from the Cretaceous to the Paleogene. Long‐distance seed dispersal, probably by birds, although possibly also by flotation, has allowed the tribe to track these forests in space and time, despite a failure to adapt to cold, dry, or highly seasonal environments. [ABSTRACT FROM AUTHOR]

Aim: Shifts in diversification rates of Australian flora and fauna have been associated with aridification, but the relationship between diversification rates and aridity has never been quantified. We employed multiple approaches to reconstruct paleoenvironments of Australia for the first time. We used this information, and phylogenetic‐based analyses, to explore how changes in temperature and increasing aridity during the Neogene influenced the diversification of the Australian blindsnakes. We tested whether diversification rates differ between arid‐adapted and mesic‐adapted lineages. Taxon: Typhlopidae, Anilios blindsnakes. Location: Australia. Materials and Methods: We estimated the historical biogeography of blindsnakes using BioGeoBEARS. We synthesised multiple approaches to reconstruct paleotemperature and paleoaridity of Australia during the Neogene. We fitted several birth‐death models and estimated diversification rates under paleoenvironmental conditions using RPANDA. We further compared diversification rates between arid‐adapted lineages versus mesic‐adapted lineages using ClaDS and GeoHiSSE. Results: Ancestral area estimation indicated Australian blindsnakes have tropical grassland origins. We found that Australia‐specific regional paleotemperature and paleoaridity provided a better explanation for diversification rate variation than global paleotemperature. Specifically, our best‐fitting model indicated that speciation rates of blindsnakes decreased with increasing aridity. We found no difference in diversification rates between arid‐ and mesic‐adapted lineages. Main Conclusions: Soon after dispersing to Australia, the common ancestors of Australian blindsnakes diversified rapidly in mesic habitats during the early Miocene. However, as the continent became increasingly arid, diversification rates decreased. We found that shifts in the environment led to the emergence of two major clades: one remaining in primarily mesic habitats and the other adapting to the expanding arid biome. Our results emphasise the importance of both arid and tropical biomes as sources and sinks of diversification. [ABSTRACT FROM AUTHOR]

Tarantulas (Araneae: Theraphosidae) are one of the most diverse and widespread families of mygalomorph spiders, with over 1000 species recognised globally. While tarantulas can be found across most of mainland Australia, from arid regions to tropical forests, the Australian fauna are not yet well characterised. There are currently only 10 nominal species, up to 8 of which are currently recognised as distinct species. Here, we aim to undertake the first continent‐wide assessment of species diversity of tarantulas in Australia using an iterative, hypothesis‐testing approach. We apply a biological species concept and use DNA sequence data from three independent loci to delimit putative species based on evidence of lack of gene flow. First, we use the mitochondrial DNA marker 16S to identify a set of putative species hypotheses. We then test each hypothesis under the expectations of neotypy, allotypy and allophyly using two independent nuclear loci, EF1γ and 28S rRNA. Genealogically exclusive lineages are inferred using haplotype networks for each nuclear locus, interpreted to represent non‐interbreeding entities and hence represent distinct biological species. We find evidence for there being at least 20 distinct biological species of tarantula in Australia, with the highest species richness in northern Australia. Our results are in line with other DNA‐based studies of Australian mygalomorphs that have uncovered undescribed species diversity. Given the low number of samples included here, there is likely to be an even greater species diversity of tarantulas in Australia. [ABSTRACT FROM AUTHOR]

The ranges of many species globally have already shifted to maintain climatic equilibrium in the face of climate change.Biocrusts—soil surface dwelling communities of lichens, bryophytes and microbes—play important functional roles in many ecosystems, particularly in drylands. Compared to better studied animal and plant taxa, dryland biocrusts have different establishment requirements and have never been assessed for historical range shifts.Here, we revisited the sites (N = 204) of a 25‐year‐old biocrust survey across a large area (400,000 km2) of drylands in south‐eastern Australia. We used quadratic models to quantify changes in the climate niches of 15 lichen, eight moss and five liverwort taxa, as well as biocrust cover and richness.Our models showed that the observed climatic niches of most taxa have become hotter and drier in the past quarter century, yet the responses of the vast majority of taxa are consistent with remaining in the same geographic space. A similar pattern was observed at the community level, where the peak of biocrust cover and richness now occurs in a hotter, drier environment. Notable exceptions were the liverwort Riccia lamellosa and lichens in the genera Cladonia and Xanthoparmelia, which showed signs of contraction at their arid range edges.Unlike more mobile taxa, most biocrust species have yet to shift geographically and may already be lagging behind the pace of climate change. One explanation for the mortality lag is that long‐term climate variability in the system is extensive, which may have selected for the ability to withstand multi‐year warm periods as long as there is an eventual return to milder conditions. However, no forecasts of future climate include a return to milder conditions, suggesting there will be an eventual loss of ecosystem multifunctionality at the contracting front. Expansion lags are most likely due to delays in the mortality of competing vascular plants.Synthesis: Our study provides a valuable contribution to the knowledge of range shifts in understudied taxa and highlights a future need to promote the expansion of biocrusts to maintain the provision of ecosystem functions and services across their range. [ABSTRACT FROM AUTHOR]

BatMap is a project that has enabled the development of spatial distribution maps for all mainland Australian and Tasmanian bat species. The distribution maps were developed by bat experts and are actively updated and maintained by utilising the collective knowledge of the members of the Australasian Bat Society. Distribution maps are the most accurate maps that are currently available for Australian bat species. The distribution maps are freely available on-line in a variety of formats. The distribution maps have been used for a variety of purposes, including the assessment of the spatial and taxonomic accuracy of bat records from ecological datasets, particularly datasets that are managed by the Atlas of Living Australia, which are considered by many to be the key source of spatial information for bats. BatMap enables better conservation outcomes for Australian bat fauna through the provision of authoritative, readily accessible and usable maps that can be used to increase the accuracy and reliability of bat records that contribute to decision making processes for conservation purposes. BatMap (https://www.ausbats.org.au/batmap.html) is a set of distribution maps, that have been developed by experts, for every bat species in Australia. The maps can be used for a variety of purposes including: discovering where bats occur; checking the accuracy of bat records; brochures and posters; and assessing areas proposed for development against bat species that are likely to occur there. Knowing what bats occur where can help us to better manage and achieve better conservation outcomes for the Australian bat fauna. [ABSTRACT FROM AUTHOR]

Aim: Lineages colonizing subtropical oceanic islands often have to overcome geographical isolation and novel climate stressors to found new populations. Historical and ecological factors influence the success of colonization and subsequent diversification, leaving a signal in the genetic constitution of the diverged, range‐restricted taxa. Here, we examined the historical biogeography of endemic marine fishes to quantify the role of geographical proximity and climate differences in determining colonization, and the underlying mechanisms of speciation. Location: Subtropical islands of the Southwest Pacific. Taxa: Thirty endemic marine ray‐finned fishes from 17 genera. Methods: Using parametric biogeographical history models, we estimated the ancestral geographical ranges for 144 species based on time‐calibrated phylogenies that included endemic species and their closest sister taxa, linking terminal nodes with geographical distribution classified into 14 biogeographical areas. Results: Ancestral range estimations revealed most species originated in Australia (66%), while only 10% and 7% originated in northern tropical Pacific locations and the East Pacific respectively, with 17% of species‐range estimations being inconclusive. Vicariant events alone were identified as the most likely process shaping range evolution in 57% of the 14 best‐fitting models, dispersal alone was favoured for 14% of species and both processes had a role for the remaining 29% of species. Across all phylogenies, likelihood‐ratio tests confirmed that geographical distance and climatic differences constrained dispersal in 73% and 33% of species, respectively. Main Conclusions: Marine fishes endemic to subtropical islands of the Southwest Pacific originated by vicariant and jump‐dispersal events mainly from ancestral populations in mainland Australia. Geographical distance and climatic differences are significant taxon‐specific factors influencing the dispersal of marine fishes in the region. [ABSTRACT FROM AUTHOR]

An emerging research program on population and geographic range dynamics of Australia's mammals illustrates an approach to better understand and respond to geographic range collapses of threatened wildlife in general. In 1788, Europeans colonized an Australia with a diverse and largely endemic mammal fauna, where many species that are now extinct or threatened were common and widespread. Subsequent population declines, range collapses and extinctions were caused by introduced predators and herbivores, altered land use, modified fire regimes and the synergies between these threats. Declines in population and range size continue for many Australian mammals despite legislative protection and conservation interventions. Here, we propose an approach that integrates museum data and other historical records into process‐explicit macroecological models to better resolve mammal distributions and abundances as they were at European arrival. We then illustrate how this integrative approach can identify the likely synergistic mechanisms causing mammal population declines across these and other landscapes. This emerging research approach, undertaken with fine temporal and spatial resolution, but at large geographic scales, will provide valuable insights into the different pathways to, and drivers of, extinction. Such insights may, in turn, underpin conservation strategies based on a process‐explicit understanding of population decline and range collapse under alternative scenarios of impending climate and environmental change. Given that similar information is available for other regional biotas, the approach we describe here can be adapted to conserve threatened wildlife in other regions across the globe. [ABSTRACT FROM AUTHOR]

We investigated the entire butterfly fauna of the Samoan Archipelago (Pacific Ocean) by combining COI barcode sequences for specimens from these islands with those available in repositories at larger biogeographic scale. Haplotype networks and a generalized mixed Yule‐coalescent (GMYC) model were applied to identify evolutionary significant units (ESUs). The ESUs from Samoan islands were compared with ESUs of the same or sister taxa regionally and worldwide to explore the level of endemicity and of congruence between established taxonomy and COI barcodes. The level of ESUs endemicity was similar to that shown by species and subspecies. Australia was the most frequent origin for Samoan lineages, followed by Orient‐Asia. When comparing the agreement and mismatch between established taxonomy and ESUs between the Australia‐Oceania region and Europe and North America, the COI molecular marker revealed a similar performance in taxonomic identification. Despite this overall convergent pattern, the degree of mtDNA divergence and the analysis of functional traits suggested that the mechanisms producing patterns of genetic differentiation in temperate butterflies over ancient continental lands differ to those occurring across a vast ocean into geologically young islands. Mechanisms on Samoan islands include relatively recent and exceptional oceanic dispersal, possibly followed by repeated extinction events. In the Australia‐Oceania region we found a similar fraction of species showing introgression with the maintenance of phenotypic differences as it occurs on the mainland, but the phenomenon was limited to sectors of each species distribution area. Regular gene flow among the Samoan islands seems to prevent allopatric speciation within the archipelago. [ABSTRACT FROM AUTHOR]

Madagascar is home to many endemic plant and animal species owing to its ancient isolation from other landmasses. This unique fauna includes several lineages of termites, a group of insects known for their key role in organic matter decomposition in many terrestrial ecosystems. How and when termites colonised Madagascar remains unknown. In this study, we used 601 mitochondrial genomes, 93 of which were generated from Malagasy samples, to infer the global historical biogeography of Neoisoptera, a lineage containing more than 80% of described termite species. Our results indicate that Neoisoptera colonised Madagascar between 7 and 10 times independently during the Miocene, between 8.4 and 16.6 Ma (95% HPD: 6.1-19.9 Ma). This timing matches that of the colonization of Australia by Neoisoptera. Furthermore, the taxonomic composition of the Neoisopteran fauna of Madagascar and Australia are strikingly similar, with Madagascar harbouring an additional two lineages absent from Australia. Therefore, akin to Australia, Neoisoptera colonised Madagascar during the global expansion of grasslands, possibly helped by the ecological opportunities arising from the spread of this new biome. [ABSTRACT FROM AUTHOR]

Native bees augment pollination services in the Northern Hemisphere, especially cultivated apple crops, yet Southern Hemisphere contexts are poorly known. We observed the foraging behaviour of 69 354 invertebrate flower visitors in Australian orchards (two regions, 3 years) to assess the efficacy of pollination service (Peff). Native stingless bees and introduced honey bees were the most abundant visitors and most efficacious pollinators (Tetragonula Peff = 6.16; Apis Peff = 13.02), with Tetragonula becoming important service providers above 22°C. However, visits by tree-nesting stingless bees decreased with distance from native forest (less than 200 m) and their tropical/subtropical distribution precludes pollination service in other major Australian apple-producing regions. More broadly distributed native allodapine and halictine bees transferred the most pollen per-visit, but their low abundances reduce efficacies (Exoneura Peff = 0.03; Lasioglossum Peff = 0.06), resulting in a general dependence on honey bees. This reliance is a burden of biogeography, since key Northern Hemisphere pollinators of apple (Andrena, Apis, Bombus, Osmia) do not naturally occur in Australasia—where there is only 15% generic overlap with Central Asian bees sympatric with wild apple distributions (cf. Palaearctic 66% and Nearctic 46% generic overlaps). The historical biogeography of bees therefore drives an extreme dependence on one introduced species for apple pollination in Australia. [ABSTRACT FROM AUTHOR]

Dry rainforests and open woodlands occur across much of eastern Australia. However, the biogeographic history of these habitats remains poorly known, especially when compared to nearby moist rainforest areas. Land snails are commonly used as model organisms to understand patterns of origins of regional endemism due to their low vagility. Here we present an analysis of patterns of mitochondrial genetic diversity in three camaenid snail lineages with distributions centred on vine-thicket and open woodland habitats of eastern Queensland, specifically Euryladra from open woodlands, Brigaladra from inland semievergreen vine thickets, and Figuladra from coastal vine thickets. Lineages from habitats west of the Great Dividing Range show relatively low genetic divergence between localities, with particularly low structuring in the open woodland taxon Euryladra. Figuladra from vine-thicket habitats closer to the coast shows relatively deeper genetic divergence, with marked divergences between some upland and lowland areas in south-east Queensland, and across the St Lawrence Gap. This structuring suggests that taxa associated with vine thicket habitats have had a more discernible history of isolation than open woodlands. This said, genetic divergence across many vine thickets patches in lowland coastal regions is also shallow, suggesting many apparently disjunct vine thicket habitats and their associated species also have a recent history of connectivity. Dry rainforests and open woodlands occur across much of eastern Australia. Land snails are model organisms to understand regional biodiversity due to their low vagility. We present an analysis of genetic diversity in three eastern Queensland camaenid snail lineages. These analyses reveal that there is a difference in the genetic diversity of species living in open woodland compared to those inhabiting dry rainforest. Photograph by Lorelle Stanisic. [ABSTRACT FROM AUTHOR]

Aim: Many plant species reproduce clonally. However, ecologists still have much to learn about the factors that shape large‐scale patterns in plant clonal growth and reproduction, especially in the southern hemisphere. We addressed this knowledge gap by quantifying relationships between reproductive mode and a suite of plant characteristics and environmental variables. Location: Australia. Taxon: Spermatophytes. Methods: We used data for 914,456 species‐site combinations (including 4116 unique species) in Australia to quantify the bivariate relationships between the probability of species having clonal reproduction and four plant characteristics and 16 environmental variables, using phylogenetic logistic regressions. We also compared the relative effects across plant characteristics and environmental variables groups through principal component analysis and phylogenetic logistic regressions. Results: The probability of species having clonal reproduction was much more strongly related to plant characteristics than to environmental variables. Short, herbaceous plants and monocots were more likely to have clonal reproduction and were more common in environments with low temperatures, low solar radiation, high moisture availability, high net primary productivity (NPP) and high soil organic carbon and nitrogen contents. Tall, woody plants and eudicots tended to have only sexual reproduction, and were more common in dry and soil impoverished environments. Main conclusions: Our results advance the understanding of the factors that shape large‐scale patterns in plant reproduction strategy. For example, the fact that clonality is more common in shorter, herbaceous species suggests that clonality can be added to the suite of traits that align species on the fast‐slow continuum. The fact that clonal reproduction is more tightly correlated with moisture availability, NPP and soil nutrients than climatic extremes and variations suggests that clonal reproduction may be better understood as a strategy for population expansion in resource abundant sites than as a strategy for reproductive assurance under environmental stress. [ABSTRACT FROM AUTHOR]

A new species of giant trapdoor spider, Euoplos dignitas sp. nov. (family Idiopidae), is described from the Brigalow Belt of inland Queensland, Australia. Phylogenetic analysis of a six gene molecular dataset for the tribe Euoplini reveals that this species is sister to the spinnipes-group from eastern Queensland, and unrelated to a morphologically similar congener (E. grandis Wilson & Rix, 2019) that occurs further south in the Brigalow Belt. Both E. dignitas sp. nov. and E. grandis are very large, scopulate, plug door-building trapdoor spiders from transitional woodland habitats on vertosols ('black soils'), with superficially similar females and strongly sexually-dimorphic 'honey-red' males. Information on the known biology and distribution of E. dignitas sp. nov. is summarized, and a conservation assessment is provided under the International Union for Conservation of Nature's (IUCN) Red List Criteria, indicating that this species is likely Endangered. [ABSTRACT FROM AUTHOR]

Accurate chronology of climatic shifts is critical to understand the controls on landscape and species evolution. Unfortunately, direct dating of continental climate change is hindered by the scarcity of dateable terrestrial products evidencing climatic shifts. Here we use ferruginous indurations from the arid landscapes of the Nullarbor Plain in southern Australia to constrain the timing of Plio‐Pleistocene aridification in the continental realm. We present (U‐Th)/He goethite data implying active induration processes between c. 2.7 and 2.4 Ma. Chemical‐mineralogical and petrographic examination suggests that formation of ferruginous indurations was linked with a decline of the groundwater table, driven by the rapid climatic shift from humid late Pliocene to arid early Pleistocene conditions. Combined with local to global climatic proxies, we conclude that ferruginous indurations are promising targets to obtain absolute ages on landscape evolution to refine continental climatic chronology and improve understanding of the environmental drivers of species diversification and extinction. Plain Language Summary: The reconstruction of Earth's climate record is typically founded on the physicochemical properties of marine sediments. Continental sediments that yield time‐constrained climate information are rare, but important to interpret wider Earth system responses and the co‐evolution of regional climate, landscape, and biota. This study presents direct dating of continental climate change on the Nullarbor Plain to constrain its development as an important biogeographic barrier driving species diversification between SW‐ and SE‐Australia. Age dating of iron‐oxide cements constrains the waning availability of mobile water (e.g., groundwater) and the onset of drier conditions related to global Plio‐Pleistocene climate change. These findings demonstrate that iron‐oxides may provide an excellent continental archive to anchor major climate shifts and help understand associated terrestrial ecosystem change. Key Points: (U‐Th)/He data from ferruginous indurations capture the onset of Plio‐Pleistocene aridification in southern AustraliaCorrelation of induration age with other climatic proxies indicates that ferruginous indurations track terrestrial water table evolutionTiming of aridification constrains evolution of important biogeographic barrier [ABSTRACT FROM AUTHOR]

As recently circumscribed, Sesamum was rendered monophyletic by including the three segregate genera Ceratotheca , Dicerocaryum and Josephinia. Here, the monophyly of Sesamum and the currently accepted infrageneric taxa was tested using expanded phylogenetic analyses. In addition, nine taxonomically useful morphological characters were optimized on the resulting phylogenetic tree to assess their evolutionary pattern. The phylogenetic analyses support the expanded circumscription of Sesamum and the monophyly of Sesamum section Sesamum relative to Sesamum sections Aptera, Ceratotheca , Chamaesesamum , Dicerocaryum , Josephinia and Sesamoptera. Most sections were retrieved as monophyletic, except Sesamum section Ceratotheca which was shown to be paraphyletic. Character reconstruction infers the ancestor of Sesamum to have had an erect growth habit, simple leaves with entire margins, ovaries with incompletely divided locules, indehiscent capsules that are oblong-quadrangular in lateral view with a beaked apex and winged seeds. Relative to the ancestral states, Sesamum has dehiscent fruits and fully divided locules as synapomorphies, with reversals to the ancestral state (indehiscence, undivided locules) in Sesamum sections Josephinia and Dicerocaryum. The absence of trichomes on mature vegetative parts and the development of lobed leaves are synapomorphies for Sesamum section Sesamopteris. Characters such as dentate and lobulate leaf margins and discoid fruit with horn-like protrusions are homoplastic in Sesamum. Dated phylogeny and ancestral range estimation suggest a southern African origin for the genus with subsequent diversification to tropical Africa, India and Australia. Sesamum has an estimated crown age of 38.1 ± 5.2 Myr with subsequent dispersal scenarios into tropical Africa, Asia and Australia during the Miocene from 24.5 Mya. Dispersal, rather than continental vicariance, is the probable explanation for the pantropical distribution of Sesamum. [ABSTRACT FROM AUTHOR]

Aim: Limb reduction is a dramatic evolutionary transition, yet whether it is achieved in similar trajectories across clades, and its environmental drivers, remain unclear. We investigate the macroevolutionary and biogeographical patterns of limb reduction in skinks, where limb reduction occurred more often than in any other tetrapod clade, and test their associations with substrate categories using a global database. We test for habitat associations of body shapes in a group of Australian skinks using quantitative habitat data. Location: Global (Scincidae), Australia (Sphenomorphinae). Taxon: Skinks, Australian Sphenomorphinae. Materials and Methods: We use morphological data to explore the patterns of limb reduction in the world's skinks, investigating how body proportions differ across skink clades and subfamilies. We examine the relationships between body shape and substrate (coarsely classified). Further, we investigate the relationships between body shape and high‐resolution soil and climate properties extracted from each species' distribution for Australian sphenomorphines. Results: Relationships between limb lengths and trunk elongation show idiosyncratic patterns across skink clades. Presacral vertebrae numbers positively correlate with trunk elongation in all taxa, except Glaphyromorphus. Skinks from sandy habitats show greater disparity between forelimb and hindlimb lengths than all other substrate categories. In sphenomorphines, shorter limbs and elongated trunks correlate with colder, more humid microhabitats and richer soils; high limb disparity correlates with hot, arid microhabitats and sandy, poor substrates. Main Conclusions: The evolutionary trajectories of limb reduction in skinks are clade‐specific and sometimes unique. Selection for specific limb proportions and body sizes in limb‐reduced forms changes across substrates. On poor, sandy substrates of arid environments, body shapes with longer hindlimbs may be more efficient for locomotion in a granular fluid (i.e. sand) and exploit the air–substrate interface than complete limblessness. On richer, more humid substrates, such morphology is rare, indicating that navigating cluttered substrates selects for more equal and shorter limb lengths. [ABSTRACT FROM AUTHOR]

Introduced to Australia in the 1860s, Queen Palm (Syagrus romanzoffiana) (family Arecaceae) became a popular ornamental plant in indoor and outdoor settings in the late 19th Century. Queen Palms saw a revival in popularity being heavily promoted in the 1960s and 1970s, resulting in extensive plantings commonly associated with new housing developments and business premises. The propensity of the species to fruit liberally, and its potential in being dispersed by the Grey-headed Flying Fox (Pteropus poliocephalus), has led to the plant being declared an environmental weed in some parts of New South Wales and Queensland. Drawing on data derived from a geographically structured image survey of real estate listings, this paper presents the first distribution map of horticulturally planted and maintained Queen Palms in south-eastern Australia. A comparison with the distribution of naturalized Queen Palms permits us to characterize the biogeographical parameters that circumscribe the horticultural limits of the plant in Australia and the parameters that define its naturalized range. [ABSTRACT FROM AUTHOR]

Cystophora is the second largest genus of fucoids worldwide and, like many other forest‐forming macroalgae, is increasingly threatened by a range of anthropogenic impacts including ocean warming. Yet, limited ecological information is available from the warm portion of their range (SW Western Australia), where severe range contractions are predicted to occur. Here, we provide the first insights on the abundance, diversity, productivity, and stand structure of Cystophora forests in this region. Forests were ubiquitous over more than 800 km of coastline and dominated sheltered and moderately‐exposed reefs. Stand biomass and productivity were similar or greater than that of kelp forests in the temperate reef communities examined, suggesting that Cystophora spp. play a similarly important ecological role. The stand structure of Cystophora forests was, however, different than those of kelp forests, with most stands featuring an abundant bank of sub‐canopy juveniles and only a few plants forming the canopy layer. Stand productivity followed an opposite seasonal pattern than that of kelps, with maximal growth in late autumn through early winter and net biomass loss in summer. Annually, stands contributed between 2.2 and 5.7 kg · m−2 (fresh biomass) to reef productivity depending on the dominant stand species. We propose that Cystophora forests play an important and unique role in supporting subtidal temperate diversity and productivity throughout temperate Australia, and urge a better understanding of their ecology and responses to anthropogenic threats. [ABSTRACT FROM AUTHOR]

Mammal declines across northern Australia are one of the major biodiversity loss events occurring globally. There has been no regional assessment of the implications of these species declines for genomic diversity. To address this, we conducted a species‐wide assessment of genomic diversity in the northern quoll (Dasyurus hallucatus), an Endangered marsupial carnivore. We used next generation sequencing methods to genotype 10,191 single nucleotide polymorphisms (SNPs) in 352 individuals from across a 3220‐km length of the continent, investigating patterns of population genomic structure and diversity, and identifying loci showing signals of putative selection. We found strong heterogeneity in the distribution of genomic diversity across the continent, characterized by (i) biogeographical barriers driving hierarchical population structure through long‐term isolation, and (ii) severe reductions in diversity resulting from population declines, exacerbated by the spread of introduced toxic cane toads (Rhinella marina). These results warn of a large ongoing loss of genomic diversity and associated adaptive capacity as mammals decline across northern Australia. Encouragingly, populations of the northern quoll established on toad‐free islands by translocations appear to have maintained most of the initial genomic diversity after 16 years. By mapping patterns of genomic diversity within and among populations, and investigating these patterns in the context of population declines, we can provide conservation managers with data critical to informed decision‐making. This includes the identification of populations that are candidates for genetic management, the importance of remnant island and insurance/translocated populations for the conservation of genetic diversity, and the characterization of putative evolutionarily significant units. [ABSTRACT FROM AUTHOR]

Background and Aims Cycads are regarded as an ancient lineage of living seed plants, and hold important clues to understand the early evolutionary trends of seed plants. The molecular phylogeny and spatio-temporal diversification of one of the species-rich genera of cycads, Macrozamia , have not been well reconstructed. Methods We analysed a transcriptome dataset of 4740 single-copy nuclear genes (SCGs) of 39 Macrozamia species and two outgroup taxa. Based on concatenated (maximum parsimony, maximum likelihood) and multispecies coalescent analyses, we first establish a well-resolved phylogenetic tree of Macrozamia. To identify cyto-nuclear incongruence, the plastid protein coding genes (PCGs) from transcriptome data are extracted using the software HybPiper. Furthermore, we explore the biogeographical history of the genus and shed light on the pattern of floristic exchange between three distinct areas of Australia. Six key diagnostic characters are traced on the phylogenetic framework using two comparative methods, and infra-generic classification is investigated. Key Results The tree topologies of concatenated and multi-species coalescent analyses of SCGs are mostly congruent with a few conflicting nodes, while those from plastid PCGs show poorly supported relationships. The genus contains three major clades that correspond to their distinct distributional areas in Australia. The crown group of Macrozamia is estimated to around 11.80 Ma, with a major expansion in the last 5–6 Myr. Six morphological characters show homoplasy, and the traditional phenetic sectional division of the genus is inconsistent with this current phylogeny. Conclusions This first detailed phylogenetic investigation of Macrozamia demonstrates promising prospects of SCGs in resolving phylogenetic relationships within cycads. Our study suggests that Macrozamia , once widely distributed in Australia, underwent major extinctions because of fluctuating climatic conditions such as cooling and mesic biome disappearance in the past. The current close placement of morphologically distinct species in the phylogenetic tree may be related to neotenic events that occurred in the genus. [ABSTRACT FROM AUTHOR]

Two new species of pelican spiders (family Archaeidae) are described from rainforest habitats in south-eastern Queensland, Australia – Austrarchaea davidi Rix, sp. nov. and A. laidlawae Rix, sp. nov. – and the female of A. clyneaeRix & Harvey, 2011 is described for the first time. Phylogenetic analysis of a mitochondrial molecular dataset for the genes cytochrome c oxidase subunits I and II reveals that these two new species are the closest relatives of A. judyaeRix & Harvey, 2011 and A. clyneae, respectively, with mitochondrial sequencing also used to identify newly-collected specimens of Austrarchaea from populations throughout south-eastern Queensland. These recent collections were largely made during dedicated survey work conducted after the devastating 2019–20 summer bushfires in eastern Australia. We further provide a synopsis of the archaeid fauna of south-eastern Queensland, which is comprised of 11 species in two monophyletic regional-endemic clades. A revised key to species is presented for both clades, along with updated distributional information, and live habitus images for nine of the 11 species. [ABSTRACT FROM AUTHOR]

Biogeographical reconstructions of the Indo-Australian Archipelago (IAA) have suggested a recent spread across the Sunda and Sahul shelves of lineages with diverse origins, which appears to be congruent with a geological history of recent tectonic uplift in the region. However, this scenario is challenged by new geological evidence suggesting that the Sunda shelf was never submerged prior to the Pliocene, casting doubt on the interpretation of recent uplift and the correspondence of evidence from biogeography and geology. A mismatch between geological and biogeographical data may occur if analyses ignore the dynamics of extinct lineages, because this may add uncertainty to the timing and origin of clades in biogeographical reconstructions. We revisit the historical biogeography of multiple IAA taxa and explicitly allow for the possibility of lineage extinction. In contrast to models assuming zero extinction, we find that all of these clades, including plants, invertebrates and vertebrates, have a common and widespread geographic origin, and each has spread and colonized the region much earlier than previously thought. The results for the eight clades re-examined in this article suggest that they diversified and spread during the early Eocene, which helps to unify the geological and biological histories of IAA.

Over the last 6 million years, the arid Australian Eremaean Zone (EZ) has remained as dry as it is today. A widely accepted hypothesis suggests that the flora and fauna of arid regions were more broadly distributed before aridification began. In Australia, this process started around 20 million years ago (Ma), leading to gradual speciation as the climate became increasingly arid. Here, we use genomic data to investigate the biogeography and timing of divergence of native allotetraploid tobaccos, Nicotiana section Suaveolentes (Solanaceae). The original allotetraploid migrants from South America were adapted to mesic areas of Australia and recently radiated in the EZ, including in sandy dune fields (only 1.2 Ma old), after developing drought adaptations. Coalescent and maximum likelihood analyses suggest that Nicotiana section Suaveolentes arrived on the continent around 6 Ma, with the ancestors of the Pilbara (Western Australian) lineages radiating there at the onset of extreme aridity 5 Ma by locally adapting to these various ancient, highly stable habitats. The Pilbara thus served as both a mesic refugium and cradle for adaptations to harsher conditions, due to its high topographical diversity, providing microhabitats with varying moisture levels and its proximity to the ocean, which buffers against extreme aridity. This enabled species like Nicotiana to survive in mesic refugia and subsequently adapt to more arid conditions. These results demonstrate that initially poorly adapted plant groups can develop novel adaptations in situ, permitting extensive and rapid dispersal despite the highly variable and unpredictable extreme conditions of the EZ., (© 2024 The Author(s). Molecular Ecology published by John Wiley & Sons Ltd.)

Philotheca sect. Erionema includes 14 species from eastern Australia and one from south-western Australia. We conducted a phylogenetic analysis of the section, including samples of all species, using sequences of the ITS and ETS regions of nuclear ribosomal DNA. Results were broadly congruent with a previous analysis based on morphological and flavonoid data. The analysis is consistent with the monophyly of the section and supports the monophyly of six species represented by multiple samples. Philotheca verrucosa (A. Rich.) Paul G. Wilson was resolved as paraphyletic with respect to P. freyciana Rozefelds but with poor support. Philotheca glasshousiensis , P. myoporoides and P. myoporoides subsp. myoporoides were clearly polyphyletic, including separate geographic clades and the classification of each of these taxa requires revision. In particular, disjunct northern populations of P. glasshousiensis probably represent a distinct species, the five subspecies of P. myoporoides could be treated as separate species and at least two other distinct groups that are currently included under the circumscription of subsp. myoporoides could be treated as species. The phylogeny revealed deeply divergent, geographically overlapping clades in eastern Australia and substantial distances (up to 900 km) between sister taxa. We infer that biogeography of the group has been shaped largely by vicariant differentiation of taxa. We present the first DNA analysis of relationships among the 15 species of Philotheca section Erionema. Our results support the current circumscription of six species in the group, suggest that two other species are not distinct from each other and show that two current species contain disparate evolutionary lineages that should be recognised as distinct species. This contributes to knowledge of the diversity and evolution of plants in the Australian flora. [ABSTRACT FROM AUTHOR]

Chaetopteridae forms a monophyletic clade showing an uncertain position within Annelida. The family has 75 ubiquitous species within four genera that cluster in two well-supported clades (Chaetopterus–Mesochaetopterus and Spiochaetopterus–Phyllochaetopterus) and includes several cryptic species complexes. Based on integrative taxonomy and supported by citizen science, here we describe one new and two unnamed species of Caribbean chaetopterids. Partial sequences from the nuclear 18S rRNA and mitochondrial Cytochrome Oxidase I genes of all known chaetopterid genera allowed us to (1) discuss the phylogeny of the family and (2) assign the three species into Mesochaetopterus (two) and Phyllochaetopterus (one). Mesochaetopterus stinapa, sp. nov. clearly diverged from all species of the genus, whereas Mesochaetopterus aff. xerecus forms a separate clade with Mesochaetopterus rogeri (Europe) and Mesochaetopterus xerecus (Brazil). Phyllochaetopterus aff. verrilli forms a separate clade with Phyllochaetopterus arabicus (Red Sea) and the closely related sequences from Hawai’i, Australia and French Polynesia attributed to Phyllochaetopterus verrilli (or cf. verrilli). Despite observing differences in morphology (e.g. palp colour pattern, presence or absence of eyespots, chaetal morphology and arrangement) and biogeographical distributions, only the erection of M. stinapa as a new species is well supported by the genetic distance, barcoding gap and species discrimination analyses. Our results emphasise the existence of cryptic species complexes within Mesochaetopterus and Phyllochaetopterus, whose taxonomy will require further morphological, biogeographical and molecular data to be resolved. [ABSTRACT FROM AUTHOR]

Aim: Plant populations are declining in their native ranges around the globe through the expansion of agriculture, urbanization, and plant invasions. We test the hypothesis that animal species that have spent more of their evolutionary history in a region are more dependent on native plants, particularly those plants that have spent more of their evolutionary history in the region, and are therefore more negatively impacted by native plant decline. Location: Yarra Valley landscapes, Australia. Methods: We test the presence and pattern of phylogenetic signal in native bee community responses to local flower density of ancient Australian plant lineages and the amount of native vegetation in the surrounding landscape across farm and native vegetation sites. We also test phylogenetic signal in the frequency of bee visitation to flowers from ancient Australian plant lineages. We compare the patterns of phylogenetic signal to the current understanding of bee biogeographic histories to evaluate our hypothesis. Results: There was significant phylogenetic signal in responses to flower density of plants from ancient Australian lineages, and the frequency of visitation to these flowers, with most species from the ancient Australian bee clade being positively associated with these flowers. This is consistent with our hypothesis. Significant phylogenetic signal in response to native vegetation in the surrounding landscape was driven primarily by the more recently arrived bee linages, with ancient lineages able to persist on some farms where ancient Australian flowers were present (e.g. on roadsides). Main conclusions: Bee species that have spent more of their evolutionary history in Australia are more dependent on ancient Australian plant lineages and so most negatively impacted by the decline of these plants. This may be a broader phenomenon because phylogenetic conservatism in host plant use, the main assumption underlying our hypothesis, is common among herbivorous arthropods (~500,000 species). [ABSTRACT FROM AUTHOR]

Morphological and molecular studies have consistently suggested that Sminthopsis , as currently defined, is rendered paraphyletic by the kultarr (Antechinomys laniger). They have also suggested a sister relationship between the kultarr and the long-tailed dunnart. Based on DNA sequence data from multiple mitochondrial and nuclear gene loci we reassign the long-tailed dunnart (formerly Sminthopsis longicaudata) to Antechinomys. Although there is good evidence of genetic structure within the kultarr (A. laniger), it does not correspond to the two currently recognised subspecies, viz A. laniger laniger and A. l. spenceri. We conclude that Antechinomys consists of two species, A. laniger and A. longicaudatus , consistent with morphology. We suggest that the observed genetic and morphological variation within A. laniger merits a more thorough investigation of more samples from across its range to resolve the taxonomy. Kultarrs are widespread over much of inland Australia. Although only two subspecies are currently recognised, we show that a third may be present in Western Australia. We also suggest that the long-tailed dunnart be recognised as a second species of Antechinomys as A. longicaudata. [ABSTRACT FROM AUTHOR]

Aim: Alpine plant species' distributions are thought to have been shifting to higher elevations in response to climate change. By moving upslope, species can occupy cooler and more suitable environments as climate change warms their current ranges. Despite evidence of upslope migration in the northern hemisphere, there is limited evidence for elevational shifts in southern hemisphere plants. Our study aimed to determine if alpine plants in Australia have migrated upslope in the last 2 to 6 decades. Location: Kosciuszko National Park, NSW, Australia. Methods: We collated historic occurrence data for 36 Australian alpine plant species from herbarium specimens and historic field observations and combined these historic data with modern occurrence data collected in the field. Results: Eleven of the thirty‐six species had shifted upslope in mean elevation and four species showed downslope elevational shifts. The rate of change for upslope shifts varied between 4 and 10 m per year and the rate of change for most downslope shifts was between 4 and 8 m per year, with one species shifting downslope at a high rate of 18 m per year. Additionally, some species showed shifts upward in their upper range edge and/or upward or downward shifts in their lower range edge. Five species also showed range contractions in the difference between their lower and upper range edges over time, while two showed range expansions. We found no significant differences in elevational shifts through time among herbaceous dicotyledons, herbaceous monocotyledons and shrubs. Main Conclusions: Plant elevational shifts are occurring rapidly in the Australian alpine zone. This may allow species to persist under climate change. However, if current warming trends continue, several species within the Australian alpine zone will likely run out of suitable habitat within a century. [ABSTRACT FROM AUTHOR]

Most comparative studies of biological communities in different biogeographical regions highlight ecological convergence under matched environments. Here we use savanna ant communities as a striking example where such convergence has not occurred. The savanna ant faunas of Australia, Brazil and Africa have very different functional composition due to their highly contrasting evolutionary origins.We synthesise the literature relating to the diversity and composition of savanna ant communities in the three continents, along with ant community responses to fire and aridity.Australian savannas evolved in association with a desert biome and its fauna is strongly arid adapted: it is exceptionally thermophilic, granivorous species are extremely diverse and abundant, high diversity is maintained with increasing aridity, and communities are highly resilient to simplification of vegetation structure induced by frequent fire. Brazilian savannas evolved surrounded by rainforest and have a forest‐derived ant fauna; this fauna is not so highly thermophilic, granivory is almost absent, diversity declines with increasing aridity and communities are highly sensitive to fire‐induced vegetation change. Africa has a very generalised ant fauna that has moderate representations of highly thermophilic and granivorous species, diversity appears to decline with increasing aridity, but communities are highly resilient to fire.The different biogeographical histories of tropical savannas in Australia, Brazil and Africa have led to functionally distinct ant faunas that display contrasting responses to environmental stress and disturbance. Phylogenetic niche conservatism seems to be particularly strong for granivory and thermophilia. Such intercontinental differences have important implications for understanding biodiversity responses to land management and climate change. [ABSTRACT FROM AUTHOR]

Intraspecific genetic diversity provides the evolutionary potential to adapt to changing environments and 'hotspots' of high intraspecific diversity are recognized as key targets for conservation.In south‐western Australia, intraspecific genetic diversity for mesic taxa is not uniformly distributed. Many species comprise highly divergent lineages with unique haplotypes resulting from contraction to refugia during historical arid cycles. Sampling strategies in studies of the region's unique and ancient freshwater fauna have often focused on broad distributional range, making it difficult to determine boundaries between lineages and the location of genetic hotspots.This study explored the spatial distribution of intraspecific genetic diversity in the threatened freshwater mussel, Westralunio carteri. Mitochondrial DNA sequences for 164 specimens, sampled from all basins within the distribution of the species, were used to describe lineage boundaries and the location of hotspots, and to reconstruct historical demographics.There was strong evidence for three subregions of genetic diversity based on the largely non‐overlapping distributions of three evolutionarily significant units. Spatial and demographic analyses suggest that these evolutionarily significant units persisted through past arid cycles in separate refugia. The majority of haplotypes were unique to a single location, indicating limited connectivity among populations in recent times. Hotspots were identified throughout the region. Most notably, a significant hotspot in the south‐western corner probably arose through the overlap of lineages in historical refugia.Conservation assessments often focus on the species as a whole, even though sublineages, hotspots and the threats faced are not evenly distributed across the species range. This paper highlights that effective conservation of spatially structured taxa requires targeted management of multiple genetic units. Given the importance of formal taxonomic description for conservation listings, further investigation of the potential for species delimitation within W. carteri is required. [ABSTRACT FROM AUTHOR]

Much attention is paid in conservation planning to the concept of a species, to ensure comparability across studies and regions when classifying taxa against criteria of endangerment and setting priorities for action. However, various jurisdictions now allow taxonomic ranks below the level of species and nontaxonomic intraspecific divisions to be factored into conservation planning—subspecies, key populations, evolutionarily significant units, or designatable units. Understanding patterns of genetic diversity and its distribution across the landscape is a key component in the identification of species boundaries and determination of substantial geographic structure within species. A total of 12,532 reliable polymorphic SNP loci were generated from 63 populations (286 individuals) covering the distribution of the Australian eastern three‐lined skink, Bassiana duperreyi, to assess genetic population structure in the form of diagnosable lineages and their distribution across the landscape, with particular reference to the recent catastrophic bushfires of eastern Australia. Five well‐supported diagnosable operational taxonomic units (OTUs) existed within B. duperreyi. Low levels of divergence of B. duperreyi between mainland Australia and Tasmania (no fixed allelic differences) support the notion of episodic exchange of alleles across Bass Strait (ca 60 m, 25 Kya) during periods of low sea level during the Upper Pleistocene rather than the much longer period of isolation (1.7 My) indicated by earlier studies using mitochondrial sequence variation. Our study provides foundational work for the detailed taxonomic re‐evaluation of this species complex and the need for biodiversity assessment to include an examination of cryptic species and/or cryptic diversity below the level of species. Such information on lineage diversity within species and its distribution in the context of disturbance at a regional scale can be factored into conservation planning regardless of whether a decision is made to formally diagnose new species taxonomically and nomenclaturally. [ABSTRACT FROM AUTHOR]

Spyridium Fenzl is a genus of ~45 species endemic to south-western and south-eastern Australia. This study provides the most comprehensive phylogenies of Spyridium to date, analysing both entire chloroplast genomes and the nuclear ribosomal array (18S – 5.8S – 26S). There was substantial incongruence between the chloroplast and nuclear phylogenies, creating phylogenetic uncertainty, but some clear relationships and biogeographic patterns could be established. Analyses support the monophyly of Spyridium , identifying an early east–west split at the base of the nuclear phylogeny and deep divergences of New South Wales and Tasmanian endemic clades. We also found evidence of more recent dispersal events between eastern and western Australia and between Tasmania and the mainland. Eleven taxa were found to be monophyletic in the nrDNA phylogeny and two were clearly polyphyletic (S. eriocephalum Fenzl and S. phylicoides Reissek). Although the polyphyly of S. eriocephalum correlates with the two varieties, suggesting distinct taxa, further research is required on S. phylicoides. Spyridium (Rhamnaceae) is a genus on shrubs endemic to southern and eastern Australia. We present the first nuclear rDNA and chloroplast genome phylogenies for the genus, including all described species and several phrase-name taxa. Our results support an early eastern–western Australia split in the base of the nuclear tree and early divergence of species groups endemic to Tasmania and New South Wales–Queensland. [ABSTRACT FROM AUTHOR]

How biotic and abiotic factors act together to shape biological diversity is a major question in evolutionary biology. The recent availability of large datasets and development of new methodological approaches provide new tools to evaluate the predicted effects of ecological interactions and geography on lineage diversification and phenotypic evolution. Here, we use a near complete phylogenomic‐scale phylogeny and a comprehensive morphological dataset comprising more than a thousand specimens to assess the role of biotic and abiotic processes in the diversification of monitor lizards (Varanidae). This charismatic group of lizards shows striking variation in species richness among its clades and multiple instances of endemic radiation in Indo‐Australasia (i.e., the Indo‐Australian Archipelago and Australia), one of Earth's most biogeographically complex regions. We found heterogeneity in diversification dynamics across the family. Idiosyncratic biotic and geographic conditions appear to have driven diversification and morphological evolution in three endemic Indo‐Australasian radiations. Furthermore, incumbency effects partially explain patterns in the biotic exchange between Australia and New Guinea. Our results offer insight into the dynamic history of Indo‐Australasia, the evolutionary significance of competition, and the long‐term consequences of incumbency effects. [ABSTRACT FROM AUTHOR]

Argophyllaceae is a small eudicot family of trees and shrubs of southwestern Pacific distribution, comprising two genera: Corokia and Argophyllum. The phylogeny of Corokia, which contains six species, has attracted little attention so far, the genus being usually represented by a single species in studies looking at relationships at higher taxonomic levels. Here we bridge this knowledge gap with a complete phylogeny of the genus based on whole-plastid DNA sequences. We also investigated nuclear ribosomal DNA markers, which yielded a poorly supported phylogeny. Comparing fossilcalibrated and biogeographic dating approaches, we conclude that extant Argophyllaceae species are probably not Gondwanan relicts, the timing of their divergences being better explained by longdistance dispersal after the break-up of Gondwana than by vicariance. The high level of endemicity of the species of Corokia prevents the reconstruction of a precise biogeographic history of the genus, but our phylogenies suggest that the genus originated in Australia, then about 3.5 My ago started dispersing eastwards into the Pacific towards its present-day distribution. [ABSTRACT FROM AUTHOR]

Most herbivorous mammals have symbiotic microbes living in their gastrointestinal tracts that help with harvesting energy from recalcitrant plant fibre. The bulk of research into these microorganisms has focused on samples collected from faeces, representing the distal region of the gastrointestinal (GI) tract. However, the GI tract in herbivorous mammals is typically long and complex, containing different regions with distinct physico-chemical properties that can structure resident microbial communities. Little work has been done to document GI microbial communities of herbivorous animals at these sites. In this study, we use 16S rRNA gene sequencing to characterize the microbial biogeography along the GI tract in two species of wombats. Specifically, we survey the microbes along four major gut regions (stomach, small intestine, proximal colon, distal colon) in a single bare-nosed wombat (Vombatus ursinus) and a single southern hairynosed wombat (Lasiorhinus latifrons). Our preliminary results show that GI microbial communities of wombats are structured by GI region. For both wombat individuals, we observed a trend of increasing microbial diversity from stomach to distal colon. The microbial composition in the first proximal colon region was more similar between wombat species than the corresponding distal colon region in the same species. We found several microbial genera that were differentially abundant between the first proximal colon (putative site for primary plant fermentation) and distal colon regions (which resemble faecal samples). Surprisingly, only 10.6% (98) and 18.8% (206) of amplicon sequence variants (ASVs) were shared between the first proximal colon region and the distal colon region for the bare-nosed and southern hairy-nosed wombat, respectively. These results suggest that microbial communities in the first proximal colon region--the putative site of primary plant fermentation in wombats--are distinct from the distal colon, and that faecal samples may have limitations in capturing the diversity of these communities. While faeces are still a valuable and effective means of characterising the distal colon microbiota, future work seeking to better understand how GI microbiota impact the energy economy of wombats (and potentially other hindgut-fermenting mammals) may need to take gut biogeography into account. [ABSTRACT FROM AUTHOR]

Typically, termites are treated as a single guild, which ignores important internal diversity, including diverse feeding and nesting traits. These termite traits are crucial for both ecosystem‐level fluxes and trophic webs, with implications for vertebrate species. Despite their ecological importance, the large‐scale distribution of termite feeding and nesting traits and the relationship with termite diversity is largely unknown. We investigated whether functional diversity, species richness and feeding (wood, litter, grass and dung) and nesting trait (aboveground mound, belowground nest, inside tree or outside tree nest) distributions of termites were climatically controlled. To address this gap, we assembled a continental‐scale database of termite traits and occurrence in Australia and modelled termite nesting and feeding traits in response to macroclimate. Functional richness and evenness increased primarily with temperature. Australia showed multiple hotspots of termite diversity with each hotspot showing a distinct guild composition. The large‐scale distribution of nesting traits showed that aboveground nesting species were the most common nesting guild in the dry and wet tropics, while belowground nesting dominated in seasonally cold arid environments, demonstrating a strong climatic control on nesting strategy. Given their large biomass and many interactions with other species, the macroecology of termite traits may be especially important in predicting shifts in other species' distributions at continental and global scales. [ABSTRACT FROM AUTHOR]