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A marine red yeast capable of degrading dimethyl phthalate esters (DMPEs) was isolated from deep-sea sediments of the Atlantic Ocean using enrichment culture technique. The yeast was identified as Rhodotorula mucilaginosa Mar-Y3 based on internal transcribed spacer (ITS) gene sequence analysis. The biochemical degradation pathways of three DMPE isomers, namely dimethyl phthalate (DMP), dimethyl isophthalate (DMI), and dimethyl terephthalate (DMT), were investigated using this yeast. The yeast cannot completely mineralize DMPEs, but can transform them to respective phthalate monoester or phthalic acid. R. mucilaginosa Mar-Y3 also degraded different DMPE isomers through varied metabolism pathways and biodegradation rates. The yeast performed one-step ester hydrolysis with a relatively low degradation rate to transform DMP and DMI to the respective monoester; however, monomethyl phthalate (MMP) and monomethyl isophthalate (MMI) were the dead-end products and further metabolism did not proceed. The yeast carried out sequential ester hydrolysis with a relatively high degradation rate to transform DMT to terephthalic acid (TA) via monomethyl terephthalate (MMT), but TA was resistant to further metabolism. These results suggested that phthalate esterases produced by the deep-sea yeast R. mucilaginosa Mar-Y3 had a very high substrate specificity for different DMPE isomers, and that the degradation of DMPEs by this yeast involved distinct esterases responsible for the hydrolysis of two identical carboxylic ester bonds. [ABSTRACT FROM AUTHOR]

Ammonia oxidation is the first and rate-limiting step of nitrification, which is carried out by two groups of microorganisms: ammonia-oxidizing bacteria (AOB) and the recently discovered ammonia-oxidizing archaea (AOA). In this study, diversity and abundance of AOB and AOA were investigated in five rock samples from a deep-sea hydrothermal vent site at the Mid-Atlantic Ridge (MAR) of the South Atlantic Ocean. Both bacterial and archaeal ammonia monooxygenase subunit A (amoA) gene sequences obtained in this study were closely related to the sequences retrieved from deep-sea environments, indicating that AOB and AOA in this hydrothermal vent site showed typical deep ocean features. AOA were more diverse but less abundant than AOB. The ratios of AOA/AOB amoA gene abundance ranged from 1/3893 to 1/242 in all investigate samples, indicating that bacteria may be the major members responding to the aerobic ammonia oxidation in this hydrothermal vent site. Furthermore, diversity and abundance of AOA and AOB were significantly correlated with the contents of total nitrogen and total sulfur in investigated samples, suggesting that these two environmental factors exert strong influences on distribution of ammonia oxidizers in deep-sea hydrothermal vent environment.