1. Phylogeny comparison based on conserved sequence of 16S rRNA, DNA polymerase I, and lipase genes from PLS 80 isolate.
- Author
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Nadhir, Thariq, Santosa, Sukmawan F., Miranda, Rizki, Velayati, Muhammad A., Iqbalsyah, Teuku M., and Febriani
- Subjects
CONSERVED sequences (Genetics) ,DNA polymerases ,LIPASES ,PHYLOGENY ,GEOBACILLUS stearothermophilus ,RIBOSOMAL RNA - Abstract
Pria Laot Sabang (PLS) 80 isolate was a new bacterium isolated from an underwater hot spring north of Weh Island, Aceh Province, Indonesia. This study aimed to compare the conserved regions of the 16S rRNA, DNA Polymerase I (DNA Pol I), and lipase genes to find alternative predictors to determine the PLS 80 genus. The conserved regions of the three genes were amplified using genomic DNA as the template using primer pairs of Com1F-Com2R (16S rRNA gene, 555 bp), Flip1-Rlip1 (lipase gene, 327 bp) and FP1-RP1 (DNA polymerase I gene, 650 bp). All genes were subjected to direct sequencing and identified using the NCBI BLAST tool. The phylogenetic tree using the 16S RNA gene fragment showed that PLS 80 had the closest relationship with Geobacillus thermoleovorans strain ARTRW1. When using DNA Pol I gene fragment, PLS 80 had the closest kinship with Geobacillus thermoleovorans strains SGAir0734. The construction of a phylogenetic tree using lipase gene fragment showed that the PLS 80 had the closest relationship with Geobacillus stearothermophilus strain ANRPSGB. These results require further validation using intact genes to find a possibility of determining the type of bacteria using alternative genes. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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