1. Genomics Methods for Xenopus Embryos and Tissues.
- Author
-
Gilchrist MJ, Cho KWY, and Veenstra GJC
- Subjects
- Animals, Chromatin metabolism, Chromatin Immunoprecipitation methods, DNA genetics, DNA metabolism, Embryo, Nonmammalian embryology, Genome genetics, Xenopus embryology, Chromatin genetics, Embryo, Nonmammalian metabolism, Genomics methods, High-Throughput Nucleotide Sequencing methods, Xenopus genetics
- Abstract
High-throughput sequencing methods have created exciting opportunities to explore the regulatory landscape of the entire genome. Here we introduce methods to characterize the genomic locations of bound proteins, open chromatin, and sites of DNA-DNA contact in Xenopus embryos. These methods include chromatin immunoprecipitation followed by sequencing (ChIP-seq), a combination of DNase I digestion and sequencing (DNase-seq), the assay for transposase-accessible chromatin and sequencing (ATAC-seq), and the use of proximity-based DNA ligation followed by sequencing (Hi-C)., (© 2020 Cold Spring Harbor Laboratory Press.)
- Published
- 2020
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