Search

We have designed, built, and tested two cells for in situ and, potentially, operando X-ray absorption spectroscopy experiments in transmission and fluorescence modes. The cells were developed for high-pressure and high-temperature conditions to study the catalytic processes under relevant industrial conditions. Operation of the cells was tested for Ru and Rh-based homogeneous and heterogeneous catalytic systems. Using synchrotron-based in situ X-ray absorption spectroscopy we tracked the evolution of active metal species during catalytic reactions. Our setup proved that it was capable to investigate liquid-state homogeneous and heterogenous systems under elevated temperatures, high pressures of reactive gasses, and in the presence of corrosive reagents. [ABSTRACT FROM AUTHOR]

X-ray absorption near edge structure (XANES) spectra for protein layers adsorbed at liquid interfaces in a Langmuir trough have been recorded for the first time. We studied the parkin protein (so-called E3 ubiquitin ligase), which plays an important role in pathogenesis of Parkinson disease. Parkin contains eight Zn binding sites, consisting of cysteine and histidine residues in a tetracoordinated geometry. Zn K-edge XANES spectra were collected in the following two series: under mild radiation condition of measurements (short exposition time) and with high X-ray radiation load. XANES fingerprint analysis was applied to obtain information on ligand environments around zinc ions. Two types of zinc coordination geometry were identified depending on X-ray radiation load. We found that, under mild conditions, local zinc environment in our parkin preparations was very similar to that identified in hemoglobin, treated with a solution of ZnCl2 salt. Under high X-ray radiation load, considerable changes in the zinc site structure were observed; local zinc environment appeared to be almost identical to that defined in Zn-containing enzyme alkaline phosphatase. The formation of a similar metal site in unrelated protein molecules, observed in our experiments, highlights the significance of metal binding templates as essential structural modules in protein macromolecules. [ABSTRACT FROM AUTHOR]

The distortion of atomic structure around In and Cu dopants in sphalerite ZnS was explored by extended X-ray absorption fine structure (EXAFS) spectroscopy enhanced by reverse Monte Carlo (RMC) simulation (RMC-EXAFS method). These data were complemented with quantum chemical Density Functional Theory (DFT) calculations and theoretical modeling of X-ray absorption near edge spectroscopy (XANES) spectra. The RMC-EXAFS method showed that in the absence of Cu, the In-bearing solid solution is formed via the charge compensation scheme 3Zn2+↔2In3+ + □, where □ is a Zn vacancy. The coordination spheres of In remain undistorted. Formation of the solid solution in the case of (In, Cu)-bearing sphalerites follows the charge compensation scheme 2Zn2+↔Cu+ + In3+. In the solid solution, splitting of the interatomic distances in the 2nd and 3rd coordination spheres of In and Cu is observed. The dopants' local atomic structure is slightly distorted around In but highly distorted around Cu. The DFT calculations showed that the geometries with close arrangement (clustering) of the impurities—In and Cu atoms, or the In atom and a vacancy—are energetically more favorable than the random distribution of the defects. However, as no heavy In atoms were detected in the 2nd shell of Cu by means of EXAFS, and the 2nd shell of In was only slightly distorted, we conclude that the defects are distributed randomly (or at least, not close to each other). The disagreement of the RMC-EXAFS fittings with the results of the DFT calculations, according to which the closest arrangement of dopants is the most stable configuration, can be explained by the presence of other defects of the sphalerite crystal lattice, which were not considered in the DFT calculations. [ABSTRACT FROM AUTHOR]

The oxidation state and local atomic environment of admixtures of In, Cu, and Ag in synthetic sphalerite crystals were determined by X-ray absorption spectroscopy (XAS). The sphalerite crystals doped with In, Cu, Ag, In–Cu, and In–Ag were synthesized utilizing gas transport, salt flux, and dry synthesis techniques. Oxidation states of dopants were determined using X-ray absorption near edge structure (XANES) technique. The local atomic structure was studied by X-ray absorption fine structure spectroscopy (EXAFS). The spectra were recorded at Zn, In, Ag, and Cu K-edges. In all studied samples, In was in the 3+ oxidation state and replaced Zn in the structure of sphalerite, which occurs with the expansion of the nearest coordination shells due to the large In ionic radius. In the presence of In, the oxidation state of Cu and Ag is 1+, and both metals can form an isomorphous solid solution where they substitute for Zn according to the coupled substitution scheme 2Zn2+ ↔ Me+ + In3+. Moreover, Ag K-edges EXAFS spectra fitting, combined with the results obtained for In- and Au-bearing sphalerite shows that the Me-S distances in the first coordination shell in the solid solution state are correlated with the ionic radii and increase in the order of Cu < Ag < Au. The distortion of the atomic structure increases in the same order. The distant (second and third) coordination shells of Cu and Ag in sphalerite are split into two subshells, and the splitting is more pronounced for Ag. Analysis of the EXAFS spectra, coupled with the results of DFT (Density Function Theory) simulations, showed that the In–In and Me+–In3+ clustering is absent when the metals are present in the sphalerite solid solution. Therefore, all studied admixtures (In, Cu, Ag), as well as Au, are randomly distributed in the matrix of sphalerite, where the concentration of the elements in the "invisible" form can reach a few tens wt.%. [ABSTRACT FROM AUTHOR]

Formation of gold nanoparticles (NPs) from the mixture containing NaAuCl 4 as a precursor, octadecene as a solvent and oleylamine as a reducing agent was studied in situ by means of optical and X-ray spectroscopies. Dynamic light scattering (DLS) revealed the presence of initial aggregates of 500 nm average size which split into nanoparticles of about 8 nm width shortly after the reduction from Au3+ to Au+ has been completed. Based on Density Functional Theory (DFT) simulations and analysis of X-ray absorption spectra (XAS) we identified the structure of Au3+ and Au+ gold complexes. Quantitative analysis shows that Au NPs formation proceeds in following steps: substitution of chlorine ligands in Au3+ complex by four oleylamines; reduction of Au3+ to Au+ coordinated by two oleylamines. Latter process occurs in oleylamine micelles in octadecene. The third step is a fragmentation of large micelles into smaller ones shortly after reduction Au3+ to Au+, and subsequent slow growth of Au NPs via reduction of Au+ to Au0. • Initial agglomerates are split into small 8 nm particles during the reduction of Au. • Au(III) complex is coordinated by four N located at 2.04 Å. • Au(I) complex is coordinated by two N atoms at 2.05 Å. • No Cl atoms are present in the first coordination of Au at all stages of nanoparticle formation. [ABSTRACT FROM AUTHOR]