8 results on '"Fedosov, Dmitry A."'
Search Results
2. Behavior of rigid and deformable particles in deterministic lateral displacement devices with different post shapes.
- Author
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Zunmin Zhang, Henry, Ewan, Gompper, Gerhard, and Fedosov, Dmitry A.
- Subjects
DISPLACEMENT (Mechanics) ,DEFORMATIONS (Mechanics) ,PARTICLE size distribution ,COMPUTER simulation ,PARAMETER estimation ,VISCOSITY - Abstract
Deterministic lateral displacement (DLD) devices have great potential for the separation and sorting of various suspended particles based on their size, shape, deformability, and other intrinsic properties. Currently, the basic idea for the separation mechanism is that the structure and geometry of DLDs uniquely determine the flow field, which in turn defines a critical particle size and the particle lateral displacement within a device. We employ numerical simulations using coarse-grained mesoscopic methods and two-dimensional models to elucidate the dynamics of both rigid spherical particles and deformable red blood cells (RBCs) in different DLD geometries. Several shapes of pillars, including circular, diamond, square, and triangular structures, and a few particle sizes are considered. The simulation results show that a critical particle size can be well defined for rigid spherical particles and depends on the details of the DLD structure and the corresponding flow field within the device. However, non-isotropic and deformable particles such as RBCs exhibit much more complex dynamics within a DLD device, which cannot properly be described by a single parameter such as the critical size. The dynamics and deformation of soft particles within a DLD device become also important, indicating that not only size sorting, but additional sorting targets (e.g., shape, deformability, internal viscosity) are possible. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
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3. Effect of cytosol viscosity on the flow behavior of red blood cell suspensions in microvessels.
- Author
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Chien, Wei, Gompper, Gerhard, and Fedosov, Dmitry A.
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ERYTHROCYTES ,CELL suspensions ,VISCOSITY ,CYTOSOL ,FLOW simulations - Abstract
Objective: The flow behavior of blood is strongly affected by red blood cell (RBC) properties, such as the viscosity ratio C between cytosol and suspending medium, which can significantly be altered in several pathologies (e.g. sickle‐cell disease, malaria). The main objective of this study is to understand the effect of C on macroscopic blood flow properties such as flow resistance in microvessels, and to link it to the deformation and dynamics of single RBCs. Methods: We employ mesoscopic hydrodynamic simulations to investigate flow properties of RBC suspensions with different cytosol viscosities for various flow conditions in cylindrical microchannels. Results: Starting from a dispersed cell configuration which approximates RBC dispersion at vessel bifurcations in the microvasculature, we find that the flow convergence and development of RBC‐free layer (RBC‐FL) depend only weakly on C, and require a convergence length in the range of 25D–50D, where D is channel diameter. In vessels with D≤20μm, the final resistance of developed flow is nearly the same for C = 5 and C = 1, while for D=40μm, the flow resistance for C = 5 is about 10% larger than for C = 1. The similarities and differences in flow resistance can be explained by viscosity‐dependent RBC‐FL thicknesses, which are associated with the viscosity‐dependent dynamics of single RBCs. Conclusions: The weak effect on the flow resistance and RBC‐FL explains why RBCs can contain a high concentration of hemoglobin for efficient oxygen delivery, without a pronounced increase in the flow resistance. Furthermore, our results suggest that significant alterations in microvascular flow in various pathologies are likely not due to mere changes in cytosolic viscosity. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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- View/download PDF
4. Steady shear rheometry of dissipative particle dynamics models of polymer fluids in reverse Poiseuille flow.
- Author
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Fedosov, Dmitry A., Karniadakis, George Em, and Caswell, Bruce
- Subjects
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POLYMERS , *VISCOSITY , *FLUCTUATIONS (Physics) , *TEMPERATURE , *THERMODYNAMICS , *BROWNIAN motion , *HYDRODYNAMICS , *FLUIDS - Abstract
Polymer fluids are modeled with dissipative particle dynamics (DPD) as undiluted bead-spring chains and their solutions. The models are assessed by investigating their steady shear-rate properties. Non-Newtonian viscosity and normal stress coefficients, for shear rates from the lower to the upper Newtonian regimes, are calculated from both plane Couette and plane Poiseuille flows. The latter is realized as reverse Poiseuille flow (RPF) generated from two Poiseuille flows driven by uniform body forces in opposite directions along two-halves of a computational domain. Periodic boundary conditions ensure the RPF wall velocity to be zero without density fluctuations. In overlapping shear-rate regimes the RPF properties are confirmed to be in good agreement with those calculated from plane Couette flow with Lees–Edwards periodic boundary conditions (LECs), the standard virtual rheometer for steady shear-rate properties. The concentration and the temperature dependence of the properties of the model fluids are shown to satisfy the principles of concentration and temperature superposition commonly employed in the empirical correlation of real polymer-fluid properties. The thermodynamic validity of the equation of state is found to be a crucial factor for the achievement of time-temperature superposition. With these models, RPF is demonstrated to be an accurate and convenient virtual rheometer for the acquisition of steady shear-rate rheological properties. It complements, confirms, and extends the results obtained with the standard LEC configuration, and it can be used with the output from other particle-based methods, including molecular dynamics, Brownian dynamics, smooth particle hydrodynamics, and the lattice Boltzmann method. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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5. Static and dynamic light scattering by red blood cells: A numerical study
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Mauer, Johannes, Peltomäki, Matti, Poblete, Simón, Gompper, Gerhard, and Fedosov, Dmitry A.
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Erythrocytes ,Light ,Photon Correlation Spectroscopy ,Physiology ,Physics::Medical Physics ,lcsh:Medicine ,Spectrum analysis techniques ,Physical Chemistry ,Quantitative Biology::Cell Behavior ,Scattering ,Physics::Fluid Dynamics ,Materials Physics ,Animal Cells ,Red Blood Cells ,Medicine and Health Sciences ,lcsh:Science ,Mass Diffusivity ,Physics::Biological Physics ,Viscosity ,Physics ,Electromagnetic Radiation ,Simulation and Modeling ,Classical Mechanics ,Electrophysiology ,Chemistry ,Physical Sciences ,ddc:500 ,Cellular Types ,Research Article ,Materials Science ,Fluid Mechanics ,Research and Analysis Methods ,Membrane Potential ,Continuum Mechanics ,NMR spectroscopy ,Erythrocyte Deformability ,Humans ,Chemical Physics ,Blood Cells ,lcsh:R ,Light Scattering ,Biology and Life Sciences ,Fluid Dynamics ,Cell Biology ,Models, Theoretical ,Dynamic Light Scattering ,Elasticity ,Correlation Spectroscopy ,Chemical Properties ,lcsh:Q - Abstract
Light scattering is a well-established experimental technique, which gains more and more popularity in the biological field because it offers the means for non-invasive imaging and detection. However, the interpretation of light-scattering signals remains challenging due to the complexity of most biological systems. Here, we investigate static and dynamic scattering properties of red blood cells (RBCs) using two mesoscopic hydrodynamics simulation methods—multi-particle collision dynamics and dissipative particle dynamics. Light scattering is studied for various membrane shear elasticities, bending rigidities, and RBC shapes (e.g., biconcave and stomatocyte). Simulation results from the two simulation methods show good agreement, and demonstrate that the static light scattering of a diffusing RBC is not very sensitive to the changes in membrane properties and moderate alterations in cell shapes. We also compute dynamic light scattering of a diffusing RBC, from which dynamic properties of RBCs such as diffusion coefficients can be accessed. In contrast to static light scattering, the dynamic measurements can be employed to differentiate between the biconcave and stomatocytic RBC shapes and generally allow the differentiation based on the membrane properties. Our simulation results can be used for better understanding of light scattering by RBCs and the development of new non-invasive methods for blood-flow monitoring.
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- 2017
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6. Static and dynamic properties of smoothed dissipative particle dynamics.
- Author
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Alizadehrad, Davod and Fedosov, Dmitry A.
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ENERGY dissipation , *PARTICLE dynamics analysis , *FLUID dynamics , *RADIAL distribution function , *VISCOSITY , *POISSON'S ratio - Abstract
In this paper, static and dynamic properties of the smoothed dissipative particle dynamics (SDPD) method are investigated. We study the effect of method parameters on SDPD fluid properties, such as structure, speed of sound, and transport coefficients, and show that a proper choice of parameters leads to a well-behaved and accurate fluid model. In particular, the speed of sound, the radial distribution function (RDF), shear-thinning of viscosity, the mean-squared displacement ( 〈 R 2 〉 ∝ t ), and the Schmidt number ( S c ∼ O ( 10 3 ) − O ( 10 4 ) ) can be controlled, such that the model exhibits a fluid-like behavior for a wide range of temperatures in simulations. Furthermore, in addition to the consideration of fluid density variations for fluid compressibility, a more challenging test of incompressibility is performed by considering the Poisson ratio and divergence of velocity field in an elongational flow. Finally, as an example of complex-fluid flow, we present the applicability and validity of the SDPD method with an appropriate choice of parameters for the simulation of cellular blood flow in irregular geometries. In conclusion, the results demonstrate that the SDPD method is able to approximate well a nearly incompressible fluid behavior, which includes hydrodynamic interactions and consistent thermal fluctuations, thereby providing, a powerful approach for simulations of complex mesoscopic systems. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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7. Dynamical and rheological properties of soft colloid suspensions.
- Author
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Winkler, Roland G., Fedosov, Dmitry A., and Gompper, Gerhard
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RHEOLOGY , *COLLOIDAL suspensions , *LINEAR polymers , *STAR-branched polymers , *DENDRIMERS , *PSEUDOPLASTIC fluids - Abstract
Soft colloids comprise a wide class of materials, ranging from linear polymers over polymeric assemblies, such as star polymers and dendrimers, to vesicles, capsules, and even cells. Suspensions of such colloids exhibit remarkable responses to imposed flow fields. This is related to their ability to undergo conformational changes and elastic deformations, and the adaptation of their dynamical behavior. The rational design of soft particles for targeted applications or the unraveling of their biological function requires an understanding of the relation between their microscopic properties and their macroscopic response. Here, mesoscale computer simulations provide an invaluable tool to tackle the broad range of length and time scales. In this article, we discuss recent theoretical and simulation results on the rheological behavior of ultrasoft polymeric colloids, vesicles, capsules, and cells. The properties of both, individual particles and semi-dilute suspensions, are addressed. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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8. Reverse Poiseuille Flow: the Numerical Viscometer.
- Author
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Fedosov, Dmitry A., Caswell, Bruce, and Em Karniadakis, George
- Subjects
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VISCOSITY , *RHEOLOGY , *STRAINS & stresses (Mechanics) , *VISCOSIMETERS , *PARTICLES , *DYNAMICS - Abstract
Simulations using Dissipative Particle Dynamics (DPD) were carried out on fluid systems composed of chains having N = 2,5,25 beads connected by FENE springs, and without any solvent particles. Steady-state rheological properties (non-Newtonian viscosity, normal stresses) were derived from simulations of plane reverse-Poiseuille flow (RPF) where a body force drives the flow in opposite directions in the upper and lower halves of a box. Periodic boundary conditions (BC) ensure the macro velocity to be zero on the walls without density fluctuations. Properties at several temperatures were found to satisfy the superposition principle. The same properties calculated in Couette flow with Lees-Edwards periodic BC (LEC) were found to be in excellent agreement. The RPF arrangement is generally more efficient and spans a greater range of shear rates than its Couette counterparts. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
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