5 results on '"Lamia Yacoubi"'
Search Results
2. Rare earth elements characterization associated to the phosphate fertilizer plants of Gabes (Tunisia, Central Mediterranean Sea): Geochemical properties and behavior, related economic losses, and potential hazards
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Sylvie Castet, Vivien Sarazin, Jean Yves Baliteau, Lotfi Rabaoui, Sébastien Fabre, Lamia Yacoubi, Louis Daconceicao, Michel Grégoire, Pierre Courjault-Radé, and Radhouan El Zrelli
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Tunisia ,Environmental Engineering ,010504 meteorology & atmospheric sciences ,Rare earth ,Phosphogypsum ,010501 environmental sciences ,engineering.material ,01 natural sciences ,Phosphates ,Marine pollution ,chemistry.chemical_compound ,Mediterranean sea ,Mediterranean Sea ,Humans ,Environmental Chemistry ,Fertilizers ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Phosphate ,Phosphate fertilizer ,Pollution ,Phosphorite ,chemistry ,Environmental chemistry ,engineering ,Environmental science ,Metals, Rare Earth ,Fertilizer ,Environmental Monitoring - Abstract
This is the first study on the behavior and industrial fluxes of rare earth elements (REE) in the coastal fertilizer plants of Gabes (south-eastern Tunisia), the economic losses related to their wastes, and their environmental and human health hazards. The concentrations of 16 REE were assessed in phosphate rock (PR), phosphogypsum (PG) and phosphogypsum foam (PGF) samples, collected from Gabes plants. REE concentrations ranged from 0.23 (for Sc in PG) to 309.33 mg kg−1 (for Ce in PGF). Ce was the most abundant in the three matrices, with concentrations ranging between 80.40 (in PG) and 309.33 mg kg−1 (in PGF). PGF was the most enriched with REE (1075.32 mg kg−1). The annual flow of REE from the fertilizer factories to the marine environment may reach 1523.67 t. The economic losses related to the discharge of phosphogypsum REE in the Gulf of Gabes (GG) was estimated at ~58 million US$ y−1. The potential hazards of discharged REE on the local environment and human health were also evaluated and discussed. These findings show the need for the development of a new industry exploiting REE from phosphogypsum wastes (short term) and phosphate ores (long term) which should lead to reduce its high environmental and human health footprint and to potential economic gains.
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- 2021
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3. Surface sediment enrichment with trace metals in a heavily human-impacted lagoon (Bizerte Lagoon, Southern Mediterranean Sea): Spatial distribution, ecological risk assessment, and implications for environmental protection
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Takwa Wakkaf, Michel Grégoire, Pierre Courjault-Radé, Lotfi Rabaoui, Lamjed Mansour, Radhouan El Zrelli, Sylvie Castet, and Lamia Yacoubi
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0106 biological sciences ,Pollution ,Conservation of Natural Resources ,Geologic Sediments ,Tunisia ,media_common.quotation_subject ,010501 environmental sciences ,Aquatic Science ,Oceanography ,Spatial distribution ,Risk Assessment ,01 natural sciences ,Mediterranean sea ,Metals, Heavy ,Mediterranean Sea ,Humans ,Ecological risk ,0105 earth and related environmental sciences ,media_common ,Ecology ,010604 marine biology & hydrobiology ,Sediment ,Water body ,Environmental science ,Water Pollutants, Chemical ,Environmental Monitoring - Abstract
Although several studies previously assessed the contents of trace metals in the sediments of the heavily human-impacted lagoon of Bizerte (northern Tunisia), multi-analytical approaches have not been, so far, used to assess the ecological risks in this water body. This study attempts to provide a comprehensive ecological risk assessment related to the enrichment of the lagoon sediments with seven metals (As, Cd, Cr, Cu, Hg, Pb, and Zn). Significant spatial variations were found in the metal concentrations in sediments, in relation to the degree of coastal human activities and hydrodynamics. This was confirmed with the results of the three pollution indices, Cf, PLI, and Igeo. Concordant results were found with most of the indices used to assess the ecological risks (PERI, PEL, ERL, ERM, M-ERM-Q, TU), indicating higher risks in the southern part of the lagoon. These findings can help to improve the environmental management plan of the socio-economic important lagoon of Bizerte.
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- 2021
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4. Molecular characterization of the full-length genome sequences of HDV strains circulating in Tunisia
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Frédéric Le Gal, Henda Triki, Emmanuel Gordien, Lamia Yacoubi, Ségolène Brichler, Laboratoire de Virologie Clinique, Référence Régional OMS pour la Poliomyélite et la Rougeole - Laboratory of Clinical Virology, WHO Regional Reference Laboratory on Poliomyelitis and Measles, Institut Pasteur de Tunis, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Organisation Mondiale de la Santé / World Health Organization Office (OMS / WHO), Université de Carthage - University of Carthage, Hôpital Avicenne [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Centre National de Référence Virus des hépatites B, C et Delta, Institut National de la Transfusion Sanguine [Paris] (INTS)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Institut Mondor de Recherche Biomédicale (IMRB), Institut National de la Santé et de la Recherche Médicale (INSERM)-IFR10-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), Université de Tunis El Manar (UTM), This study was partially supported by the Tunisian Ministry for Scientific Research and Technology (LR11-IPT09)., and Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-IFR10
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0301 basic medicine ,Male ,Turkey ,viruses ,MESH: Tunisia/epidemiology ,MESH: RNA, Viral/genetics ,MESH: Base Sequence ,medicine.disease_cause ,Genome ,MESH: Hepatitis Delta Virus/genetics ,MESH: Genotype ,MESH: Hepatitis D/virology ,Genotype ,Prevalence ,MESH: Genetic Variation ,MESH: Hepatitis Delta Virus/isolation & purification ,MESH: Phylogeny ,Phylogeny ,Base Composition ,MESH: Hepatitis Antibodies/blood ,MESH: Middle Aged ,Phylogenetic tree ,MESH: Hepatitis Delta Virus/classification ,General Medicine ,Middle Aged ,Hepatitis D ,3. Good health ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,RNA, Viral ,Female ,Hepatitis Delta Virus ,Adult ,DNA, Complementary ,Tunisia ,Genome, Viral ,Biology ,MESH: Turkey/epidemiology ,03 medical and health sciences ,MESH: Base Composition ,Phylogenetics ,MESH: Genome, Viral ,Virology ,Consensus sequence ,medicine ,Humans ,Point Mutation ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Hepatitis Antibodies ,Africa South of the Sahara ,MESH: Prevalence ,Retrospective Studies ,MESH: Point Mutation ,Whole genome sequencing ,Hepatitis B virus ,MESH: Humans ,Base Sequence ,Genetic Variation ,MESH: Adult ,MESH: Retrospective Studies ,MESH: DNA, Complementary ,biochemical phenomena, metabolism, and nutrition ,MESH: Male ,030104 developmental biology ,MESH: Africa South of the Sahara/epidemiology ,MESH: Hepatitis D/epidemiology ,MESH: Hepatitis D/transmission ,MESH: Female ,GC-content ,[SDV.MHEP]Life Sciences [q-bio]/Human health and pathology - Abstract
International audience; While Tunisia is endemic for hepatitis B virus (HBV), a recent large-scale retrospective study, revealed a very low prevalence (2%) of hepatitis Delta virus (HDV) (Yacoubi et al. in J Clin Virol 72:126-132, 2015). All strains were classified within the genotype 1 (HDV-1) as assessed by nucleotide sequencing of the so-called 'R0' region of the genome described previously. In this study, we aimed to determine the full-length genome sequence of HDV isolates in order to fully characterize the HDV strains spreading in Tunisia. Eleven HDV antibody and RNA positive samples were obtained from the 1615 clinical samples previously studied. The whole genome sequence was obtained for 5 strains by sequencing and realignment of four overlapping regions covering the entire genome, followed by extensive phylogenetic analyses. Tunisian sequences segregated together with Turkish and African sequences and showed 60% GC content. Alignment with an HDV-1 consensus sequence revealed that they exhibited several point mutations in different functional domains of the delta proteins that, according to previous studies, might possibly affect their properties. In conclusion, the first full-length genome sequences of Tunisian HDV isolates are provided, isolates which are closely related to Turkish and Sub-Saharan Africa strains, supporting the hypothesis for the spread of HDV-1-strains from Africa via Tunisia to Turkey, before spread to the rest of the world.
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- 2018
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5. Molecular epidemiology of hepatitis B and Delta virus strains that spread in the Mediterranean North East Coast of Tunisia
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Frédéric Le Gal, Nabil Ben Mami, Amel Sadraoui, Azouz Msaddek, Imed Cheikh, Ségolène Brichler, Wael Mansour, Emmanuel Gordien, Henda Triki, Walid Hammami, Lamia Yacoubi, Université de Carthage - University of Carthage, Laboratoire de Virologie Clinique, Référence Régional OMS pour la Poliomyélite et la Rougeole - Laboratory of Clinical Virology, WHO Regional Reference Laboratory on Poliomyelitis and Measles, Institut Pasteur de Tunis, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Organisation Mondiale de la Santé / World Health Organization Office (OMS / WHO), Service de bactériologie-Virologie-Hygiène [Avicenne], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Université Paris 13 (UP13)-Hôpital Avicenne [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Hôpital La Rabta [Tunis], Université de Tunis El Manar (UTM), Department of Gastroenterology, Tahar Maamouri Hospital, Nabeul, Tunisia, Department of Gastroenterology, Habib Bougatfa Hospital, Bizerte, Tunisia, and This study was partially supported by the Tunisian Ministry for Scientific Research and Technology (LR11-IPT09).
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Male ,MESH: Sequence Analysis, DNA ,HBsAg ,[SDV]Life Sciences [q-bio] ,viruses ,Prevalence ,Seroprevalence ,medicine.disease_cause ,MESH: Genotype ,MESH: Aged, 80 and over ,MESH: Mediterranean Region ,0302 clinical medicine ,MESH: Risk Factors ,Risk Factors ,MESH: Child ,Genotype ,HBV ,MESH: Genetic Variation ,MESH: Phylogeny ,Child ,Phylogeny ,MESH: Aged ,Aged, 80 and over ,0303 health sciences ,MESH: Middle Aged ,Mediterranean Region ,virus diseases ,Hepatitis B ,Middle Aged ,Viral Load ,Hepatitis D ,3. Good health ,MESH: Hepatitis B virus ,Infectious Diseases ,MESH: Young Adult ,MESH: RNA, Viral ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,RNA, Viral ,030211 gastroenterology & hepatology ,Female ,Hepatitis Delta Virus ,MESH: Tunisia ,MESH: Viral Load ,Viral load ,Adult ,Hepatitis B virus ,Tunisia ,Adolescent ,Genotypes ,Biology ,03 medical and health sciences ,Young Adult ,HDV ,Virology ,medicine ,Humans ,MESH: Prevalence ,030304 developmental biology ,Aged ,Retrospective Studies ,MESH: Adolescent ,Hepatitis ,MESH: Hepatitis D ,MESH: Humans ,MESH: Hepatitis B ,Molecular epidemiology ,Genetic Variation ,MESH: Adult ,MESH: Retrospective Studies ,[SDV.MHEP.HEG]Life Sciences [q-bio]/Human health and pathology/Hépatology and Gastroenterology ,Sequence Analysis, DNA ,biochemical phenomena, metabolism, and nutrition ,medicine.disease ,MESH: Hepatitis Delta Virus ,MESH: Male ,MESH: DNA, Viral ,DNA, Viral ,MESH: Female - Abstract
International audience; Background: Tunisia is classified as an area of middle endemic for hepatitis B virus (HBV) infection, however little is known about hepatitis Delta virus (HDV) infection. Objectives: This study aimed to address the prevalence of HDV infection, to identify possible risks factors, and to analyze the genetic diversity of HDV strains that are spreading in Tunisia. Study design: A retrospective large-scale study including 1615 HBsAg positive patients, native of the North East coast of Tunisia, recruited from Gastroenterology departments, was conducted. Demographic, epidemiological, ethnical, clinical and biological data were recorded. HBV and HDV serological analyses and DNA and RNA viral load quantification were performed. Genotyping of HBV and HDV strains was performed using nucleotide sequencing followed by phylogenetic analyses. Results: The study population included 819(50.7%) men and 796(49.3%) women; aged 12-90 years (mean age 41 + 13 years). A very low prevalence of HDV infection, 2% was observed. No risk factor, except a history of hospitalization for surgery was found. All HDV strains belonged to genotype 1, with a wide distribution within the HDV-1 group. They all share the African amino acid marker, a serine at position 202 of the large Delta protein. HBV genotypes were distributed as follows: HBV/D1 (56.8%), HBV/D7 (40.9%), and HBV/A2 (2.3%). Conclusion: Tunisia is a low endemic region for HDV infection, due to an efficient policy of HBV infection control. HDV-1 is the sole genotype found, with a high diversity within this group. Further studies are ongoing in order to better characterize and manage the HBV/HDV-infected patients according to the genetic variability of the viral strains. (C) 2015 Elsevier B.V. All rights reserved.
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- 2015
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