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The objective of this study was to apply different types of biological and climatic data in the distribution modeling of tree species in Mexico (Pinus ayacahuite, Pinus montezumae, Pinus oocarpa, Quercus calophylla, and Quercus uxoris). Two types of climate layers (climate types and bioclimatic variables) and three types of biological collection data (presence only data, abundance data, and presence/ absence data) were used for modeling. The results show that there is no one type of biological and climatic data that fits all species. This study evidences that the use of a single type of data may result in underestimation or overestimation in potential distribution areas. [ABSTRACT FROM AUTHOR]

Various spatial modelling methods and tools have been used in ecology and biogeography. The application of these options serves a dual function: first, they offer information about the potential distribution of species to understand the richness and diversity of unassessed areas. Second, spatial modelling methods employ these predictions to select relevant sites to determine natural conservation areas. In this study, we compared three methods for modelling the spatial distribution of Egg-cone Pine (Pinus oocarpa Schiede), an important non-timber pine in Mexico. The final goal is to estimate suitable areas for the conservation and reproduction of superior individuals (plus trees) of P. oocarpa as a conservation strategy outside the known distribution since this species possesses a high ecological and economic value. The model used were a generalised linear model (GLM) as a parametric regression method, random forest (RF) as a machine-learning method, and the MaxEnt model, a standard procedure, implemented using the Kuenm R package. The results suggest that the models used performed well since the AUROC was between 0.95 and 0.98 in all cases. MaxEnt and random forest approaches provided more conservative predictions for the distribution of suitable areas of plus trees of P. oocarpa than the generalised linear model, but the random forest algorithm achieved the best performance. The results of the study allowed the determination of ex situ conservation areas for P. oocarpa plus trees outside of their known distribution. [ABSTRACT FROM AUTHOR]

Development of genome-wide resources for application in genomic selection or genome-wide association studies, in the absence of full reference genomes, present a challenge to the forestry industry, where longer breeding cycles could benefit from the accelerated selection possible through marker-based breeding value predictions. In particular, large conifer megagenomes require a strategy to reduce complexity, whilst ensuring genome-wide coverage is achieved. Using a transcriptome-based reference template, we have successfully developed a high density exome capture genotype-by-sequencing panel for radiata pine (Pinus radiata D.Don), capable of capturing in excess of 80,000 single nucleotide polymorphism (SNP) markers with a minor allele frequency above 0.03 in the population tested. This represents approximately 29,000 gene models from a core set of 48,914 probes. A set of 704 SNP markers capable of pedigree reconstruction and differentiating individual genotypes were tested within two full-sib mapping populations. While as few as 70 markers could reconstruct parentage in almost all cases, the impact of missing genotypes was noticeable in several offspring. Therefore, 60 sets of 110 randomly selected SNP markers were compared for both parentage reconstruction and clone differentiation. The performance in parentage reconstruction showed little variation over 60 iterations. However, there was notable variation in discriminatory power between closely related individuals, indicating a higher density SNP marker panel may be required to elucidate hidden relationships in complex pedigrees. [ABSTRACT FROM AUTHOR]

Soil organic matter (SOM) mineralization represents one of the largest fluxes in the global carbon cycle. Numerous studies have shown that soil organic carbon decomposition was largely changed owing to the addition of litter, however very few studies have focused on the role of plant organs in the priming effects (PEs). Here, we studied the effects of different Pinus massoniana organs (fresh leaf, leaf litter, twigs, absorptive fine roots, and transport fine roots) on C4 soil respiration by applying the 13C isotopic natural abundance method. Results showed that the effects of plant organs on PEs were significantly different at the end of 210 days incubation, which can be ascribed to contrasting organs traits especially non-structural carbohydrates and water-soluble compounds. Transport fine roots and fresh leaf induced positive PE, whereas absorptive fine roots induced negative PE. Leaf litter did not change the native SOC decomposition. Plant organ addition can change the microbial community and result in the reduction of bacteria-to-fungi ratio. Our results suggest that with regard to determining the PE of the entire ecosystem, using fresh leaf to represent leaf litter and aboveground to represent underground is implausible. [ABSTRACT FROM AUTHOR]

Fire regime shifts are driven by climate and natural vegetation changes, but can be strongly affected by human land management. Yet, it is poorly known how humans have influenced fire regimes prior to active wildfire suppression. Among the last 250 years, the human contribution to the global increase in fire occurrence during the mid-19th century is especially unclear, as data sources are limited. Here, we test the extent to which forest management has driven fire regime shifts in a temperate forest landscape. We combine multiple fire proxies (macroscopic charcoal and fire-related biomarkers) derived from highly resolved lake sediments (i.e., 3–5 years per sample), and apply a new statistical approach to classify source area- and temperature-specific fire regimes (biomass burnt, fire episodes). We compare these records with independent climate and vegetation reconstructions. We find two prominent fire regime shifts during the 19th and 20th centuries, driven by an adaptive socio-ecological cycle in human forest management. Although individual fire episodes were triggered mainly by arson (as described in historical documents) during dry summers, the biomass burnt increased unintentionally during the mid-19th century due to the plantation of flammable, fast-growing pine tree monocultures needed for industrialization. State forest management reacted with active fire management and suppression during the 20th century. However, pine cover has been increasing since the 1990s and climate projections predict increasingly dry conditions, suggesting a renewed need for adaptations to reduce the increasing fire risk. [ABSTRACT FROM AUTHOR]

The pinewood nematode (PWN), Bursaphelenchus xylophilus, is an important plant-parasitic nematode that can cause severe mortality of pine trees. This PWN-induced harm to plants may be closely related to the abundance and diversity of the symbiotic microorganisms of the parasitic nematode. In this study, nematodes were divided into untreated and antibiotic-treated groups. Nematodes were treated by fumigation with different amounts of α-pinene, and the resultant mortality rates were analyzed statistically. Concentrations of symbiotic bacteria were calculated as colony-forming units per nematode. High-throughput sequencing was used to investigate the bacterial community structure. The results showed that the mortality of nematodes increased slightly with an increasing concentration of α-pinene, and nematodes untreated with antibiotics were more sensitive to α-pinene than those treated with antibiotics. The highest abundance of symbiotic bacteria was obtained via medium and low levels of α-pinene, but for which community diversity was the lowest (Shannon and Simpson indexes). The proportion of Pseudomonas spp. in the symbiotic bacteria of nematodes without antibiotics was relatively high (more than 70%), while that of Stenotrophomonas spp. was low (6%–20%). However, the proportion of Stenotrophomonas spp. was larger than that of Pseudomonas spp in the symbiotic bacteria associated with the antibiotic-treated nematodes. Pseudomonas sp. increased after pinene treatment, whereas Stenotrophomonas spp. decreased. These results indicate that although α-pinene has low toxicity to PWNs over a short time period, α-pinene ultimately influences the abundance and community diversity of the symbiotic bacteria of these nematodes; this influence may potentially disturb the development and reproduction of nematodes in the process of infecting pine trees. [ABSTRACT FROM AUTHOR]

Fire is a key ecological process in several biomes worldwide. Over recent decades, human activities (e.g. rural abandonment, monoculture plantations) and global warming are magnifying the risk of fire, with changes in fire intensity and frequency. Here, we offer the first study that examines the impact of fire on the spur-thighed tortoise Testudo graeca living in a native cork oak forest and pine plantation in north-western Africa. A total of 44 transects (22 burnt and 22 unburnt) were sampled at 8 sites affected by fires of natural cork oak forest and pine plantation with 8 surveys per site in 2015–2017 (264 hours of sampling effort). Tortoise densities were estimated with line-transect distance sampling. The detection probability of tortoises was higher in burnt (0.915) than unburnt (0.474) transects. The density of tortoises was negatively associated with elevation and declined with fire by c. 50% in both forest types. The negative response of T. graeca to fire should be considered in conservation planning of this species in north-western Africa in a future scenario of changes in fire regime. [ABSTRACT FROM AUTHOR]

This paper investigates how former hunter-gatherers living along the southern North Sea coast in NW Europe adapted to long-term and short-term climatic and environmental changes at the beginning of the Holocene. It is argued that contemporaneous hunter-gatherers repeatedly changed their hunting equipment in response to changing climate and environment, not just for functional reasons but mainly driven by socio-territorial considerations. Based on a Bayesian analysis of 122 critically selected radiocarbon dates a broad chronological correlation is demonstrated between rapid changes in the design and technology of stone projectiles and short but abrupt cooling events, occurring at 10.3, 9.3 and 8.2 ka cal BP. Combined with the rapid sea level rises and increased wildfires these climatic events probably impacted the lifeways of hunter-gatherers in such a way that they increasingly faced resource stress and competition, forcing them to invest in the symbolic defense of their social territories. [ABSTRACT FROM AUTHOR]

Continuity in forest habitats is crucial for species diversity and richness. Ancient Scots pine forests are usually under forest management, which disturbs vegetation and causes differentiation in terms of tree stand age. To date, vegetation variability in ancient Scots pine forests has not been examined based on tree stand age classes. In the present study the continuity of a large Scots pine forest complex was investigated, and a system of sampling plots established in five tree stand age classes: initiation stands (4–10 years), young stands (20–35 years), middle-aged stands (45–60 years), pre-mature stands (70–85 years) and mature stands (95–110 years). Species composition, including vascular plants, bryophytes and lichens, on soil, tree trunks, and coarse woody debris, was analyzed. Based on existing classifications systems, forest species and ancient forest species groups were distinguished. In the studied ancient Scots pine forests the species pool and richness were relatively low, and the vegetation consisted mostly of generalist species. Cryptogams, which can grow on diverse substrates, were the most abundant species. Moreover, most species could tolerate both forest and non-forest conditions. Age class forests provided different environmental niches for species. Initiation stands were optimal for terrestrial light-demanding species, and in terms of species composition, initiation stands were most specific. Young stands were most preferred by species on coarse woody debris, and at this stage of stand maturation epiphytic species re-appeared. The oldest stands were not rich in forest specialists, i.e. species of closed forest and ancient forest species. Cryptogams of closed forests inhabited different substrates, and they were not associated only with the oldest stands. The low number of forest specialists in the oldest stands may be a general feature of acidophilus pine forests. However, it may also be a result of the lack of species sources in the vicinity of maturing pine stands. In managed forests a frequent diversity pattern is an increase in a species pool and richness after clear-cut logging. In the present study we obtained higher species pools in initiation and young stands, but richness was similar in all tree stand age classes. This resulted from taking into account species of different substrates (terrestrial, epixylous and epiphytic species) which changed their participation in the vegetation of subsequent stages of tree stand development. [ABSTRACT FROM AUTHOR]

We performed a greenhouse experiment to assess how differences in AM fungal community composition affect competitive response of grassland plant species. We used a full factorial design to determine how inoculation with natural AM fungal communities from different habitats in Western Estonia affects the growth response of two grassland forbs (Leontodon hispidus L., Plantago lanceolata L.) to competition with a dominant grass (Festuca rubra L.). We used AM fungal inocula that were known to differ in AM fungal diversity and composition: more diverse AM fungal communities from open grasslands and less diverse AM fungal communities from former grassland densely overgrown by pines (young pine forest). The presence of AM fungi balanced competition between forb and grass species, by enhancing competitive response of the forbs. The magnitude of this effect was dependent on forb species identity and on the origin of the AM fungal inoculum in the soil. The grassland inoculum enhanced the competitive response of the forb species more effectively than the forest inoculum, but inoculum-specific competitive responses varied according to the habitat preference of the forb species. Our findings provide evidence that composition and diversity of natural AM fungal communities, as well as co-adaptation of plant hosts and AM-fungal communities to local habitat conditions, can determine plant-plant interactions and thus ultimately influence plant community structure in nature. [ABSTRACT FROM AUTHOR]

Plant life cycle begins with germination of seed below the ground. This is followed by seedling’s development in the dark: skotomorphogenesis; and then a light-mediated growth: photomorphogenesis. After germination, hypocotyl grows rapidly to reach the sun, which involves elongation of shoot at the expense of root and cotyledons. Upon reaching ground level, seedling gets exposed to sunlight following a switch from the etiolated (skotomorphogenesis) to the de-etiolated (photomorphogenesis) stage, involving a series of molecular and physiological changes. Gymnosperms have evolved very differently and adopted diverse strategies as compared to angiosperms; with regards to response to light quality, conifers display a very mild high-irradiance response as compared to angiosperms. Absence of apical hook and synthesis of chlorophyll during skotomorphogenesis are two typical features in gymnosperms which differentiate them from angiosperms (dicots). Information regarding etiolation and de-etiolation processes are well understood in angiosperms, but these mechanisms are less explored in conifer species. It is, therefore, interesting to know how similar these processes are in conifers as compared to angiosperms. We performed a global expression analysis (RNA sequencing) on etiolated and de-etiolated seedlings of two economically important conifer species in Sweden to review the differentially expressed genes associated with the two processes. Based on the results, we propose that high levels of HY5 in conifers under DARK condition coupled with expression of few other genes associated with de-etiolation in angiosperms e.g. SPA, DET1 (lower expression under DARK) and CRY1 (higher expression under DARK), leads to partial expression of photomorphogenic genes in the DARK phenotype in conifers as displayed by absence of apical hook, opening of cotyledons and synthesis of chlorophyll. [ABSTRACT FROM AUTHOR]

Pine invasion is a global threat that is occurring in native forests of diverse regions of the world. This process is arising in a scenario of rapid forest deforestation and degradation. Therefore, elucidate which forests attributes explain invasibility is a central issue in forest ecology. The Coastal Maulino forest is an endemic forest of central Chile, which has suffered a large history of disturbance, being replaced by large extensions of Pinus radiata plantations. This land transformation conveys high rates of pines invasion into native remnants. In this study we examined to what extent structural features of forest patches explains invasibility of this forest-type. Within eight forest fragments, we sampled 162 plots (10 x 10 m2 each). We quantified seedling pine density and related these estimates with tree cover, litter depth, PAR radiation, and diversity of the resident community. Our results indicate that canopy cover was the most important variable to determine seedling pine density within forest fragments. Our investigation highlights the importance to conserve the forests cover to reduce significantly their invasibility. This action can be effective even if we cannot avoid pine plantations in the region as a source of a massive seed dispersal to forests with well conserved canopy. [ABSTRACT FROM AUTHOR]

Managing forests to preserve biodiversity requires a good knowledge not only of the factors driving its dynamics but also of the structural elements that actually support biodiversity. Tree-related microhabitats (e.g. cavities, cracks, conks of fungi) are tree-borne features that are reputed to support specific biodiversity for at least a part of species’ life cycles. While several studies have analysed the drivers of microhabitats number and occurrence at the tree scale, they remain limited to a few tree species located in relatively narrow biogeographical ranges. We used a nationwide database of forest reserves where microhabitats were inventoried on more than 22,000 trees. We analysed the effect of tree diameter and living status (alive or dead) on microhabitat number and occurrence per tree, taking into account biogeoclimatic variables and tree genus. We confirmed that larger trees and dead trees bore more microhabitats than their smaller or living counterparts did; we extended these results to a wider range of tree genera and ecological conditions than those studied before. Contrary to our expectations, the total number of microhabitat types per tree barely varied with tree genus–though we did find slightly higher accumulation levels for broadleaves than for conifers–nor did it vary with elevation or soil pH, whatever the living status. We observed the same results for the occurrence of individual microhabitat types. However, accumulation levels with diameter and occurrence on dead trees were higher for microhabitats linked with wood decay processes (e.g. dead branches or woodpecker feeding holes) than for other, epixylic, microhabitats such as epiphytes (ivy, mosses and lichens). Promoting large living and dead trees of several tree species may be a relevant, and nearly universal, way to favour microhabitats and enhance the substrates needed to support specific biodiversity. In the future, a better understanding of microhabitat drivers and dynamics at the tree scale may help to better define their role as biodiversity indicators for large-scale monitoring. [ABSTRACT FROM AUTHOR]

The mountain pine beetle (MPB; Dendroctonus ponderosae) is a forest insect pest that attacks several different pine (Pinus) species in its native range of distribution in western North America. MPB are exposed for most of their life cycle to the chemical defenses of their hosts. These defenses are dominated by oleoresin secretions containing mostly various monoterpenes and diterpene resin acids (DRAs). Cytochrome P450 enzymes (P450s) of the MPB are thought to be involved in the metabolism of at least some of these defense compounds. Here we describe the cloning and characterization of three MPB P450s, CYP6DJ1, CYP6BW1 and CYP6BW3, and their functions in the oxidation of various monoterpenes and diterpene resin acids. CYP6DJ1 oxidizes the monoterpenes (+)-(4R)-limonene, (–)-(4S)-limonene and terpinolene and produces (4R,8R)-limonene-8,9-epoxide, (4R,8S)-limonene-8,9-epoxide, (4S,8S)-limonene-8,9-epoxide, (4S,8R)-limonene-8,9-epoxide, perilla alcohol and several unidentified oxidized compounds. These products of CYP6DJ1 were also identified in extracts of MPB treated with the same monoterpenes. CYP6BW1 and CYP6BW3 both oxidize the DRAs abietic acid, dehydroabietic acid, neoabietic acid, levopimaric acid, palustric acid, and isopimaric acid, producing hydroxylated and epoxidized DRAs. CYP6DJ1, CYP6BW1 and CYP6BW3 appear to contribute to the metabolism of oleoresin terpenes as part of the MPB’s ability to cope with host defenses. [ABSTRACT FROM AUTHOR]

A group of beads from the artificial cave of La Molina (Lora de Estepa, Sevilla) and Cova del Gegant (Sitges, Barcelona) were made from a biogenic raw material and intentionally covered by a layer of resin. This is the first time this type of treatment has been documented on elements of adornment in the Late Prehistory of the Iberian Peninsula. The composition and nature of the coatings are analysed and the symbolic role of such alterations and imitations of prehistoric adornments is discussed. [ABSTRACT FROM AUTHOR]

The retreat of coastal forests as sea level rises is well documented; however, the mechanisms which control this retreat vary with the physical and biological setting of the interface between tidal marsh and forest. Tidal flooding and saltwater intrusion as well as flooding and wind associated with storms can kill trees. Even if these processes do not kill stands, they may halt regeneration because seedlings are more sensitive to stress. We present a case study of a coastal pine forest on the Delmarva Peninsula, United States. This forest contains a persistent but nonregenerating zone of mature trees, the size of which is related to the sea level rise experienced since forest establishment. The transgression of coastal forest and shrub or marsh ecosystems is an ecological ratchet: sea-level rise pushes the regeneration boundary further into the forest while extreme events move the persistence boundary up to the regeneration boundary. [ABSTRACT FROM AUTHOR]

Tree cavities provide a critical resource for cavity-nesting animals, and high quality cavities can be difficult for animals to acquire in habitats where competition is high. We investigated the breeding performance of Lewis's Woodpeckers in three habitat types in British Columbia, Canada in 2013 and 2014. We also assessed whether the number of nest competitors and cavity availability influenced the habitat specific breeding performance of this threatened cavity nesting species. We found that daily nest survival rate was lower in burned habitat (0.15 ± 0.08 (0.05–0.37)) than in live pine (0.72 ± 0.10 (0.51–0.87)) or cottonwood (0.69 ± 0.09 (0.51–0.83)) habitats. However, hatching success (the proportion of eggs that hatch) was lower in live pine habitat (0.59 ± 0.09 95% CI) than burned (0.77 ± 0.19 95% CI) or cottonwood (0.80 ± 0.07 95% CI) habitat, and the fledging success of successful nests in live pine and burned habitat (1.86 ± 0.31 and 1.88 ± 0.59 95% CI, respectively) was slightly lower than in cottonwood habitat (2.61 ± 0.45 95% CI). Consequently, Lewis's Woodpeckers in cottonwood habitat produced more fledglings per nesting attempt (2.05 ± 0.49 95% CI) than in live pine (1.53 ± 0.35 95% CI) or burned (0.79 ± 0.49 95% CI) habitat. Habitats differed in the number of nesting competitors and the number of suitable cavities surrounding active Lewis's Woodpecker nests. Our results showed that cavity density best explained breeding performance differences although the mechanisms remain unclear. There was no evidence that the number of heterospecific nest competitors, including the invasive European Starling (Sturnus vulgaris), explained or influenced Lewis's Woodpecker breeding performance. Cavity density influenced the productivity of successful nests but did not explain habitat differences in hatching success or daily nest survival. Further work is required to understand the mechanistic basis for the habitat specific breeding performance of Lewis's Woodpeckers. Habitat differences in breeding performance in British Columbia are not consistent with those in other regions, highlighting the importance of regionally-specific demographic data for managing species at risk. [ABSTRACT FROM AUTHOR]

Pine processionary moth (PPM) feeds on conifer foliage and periodically result in outbreaks leading to large scale defoliation, causing decreased tree growth, vitality and tree reproduction capacity. Multispectral high-resolution imagery acquired from a UAS platform was successfully used to assess pest tree damage at the tree level in a pine-oak mixed forest. We generated point clouds and multispectral orthomosaics from UAS through photogrammetric processes. These were used to automatically delineate individual tree crowns and calculate vegetation indices such as the normalized difference vegetation index (NDVI) and excess green index (ExG) to objectively quantify defoliation of trees previously identified. Overall, our research suggests that UAS imagery and its derived products enable robust estimation of tree crowns with acceptable accuracy and the assessment of tree defoliation by classifying trees along a gradient from completely defoliated to non-defoliated automatically with 81.8% overall accuracy. The promising results presented in this work should inspire further research and applications involving a combination of methods allowing the scaling up of the results on multispectral imagery by integrating satellite remote sensing information in the assessments over large spatial scales. [ABSTRACT FROM AUTHOR]