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There is high demand for efficient, robust and automated routines for tomographic data reduction, particularly for synchrotron data. Registration of the rotation axis in data processing is a critical step affecting the quality of the reconstruction and is not easily implemented with automation. Existing methods for calculating the center of rotation have been reviewed and an improved algorithm to register the rotation axis in tomographic data is presented. The performance of the proposed method is evaluated using synchrotron-based microtomography data on geological samples with and without artificial reduction of the signal-to-noise ratio. The proposed method improves the reconstruction quality by correcting both the tilting error and the translational offset of the rotation axis. The limitation of this promising method is also discussed. [ABSTRACT FROM AUTHOR]

X-ray grating interferometry provides substantially increased contrast over conventional absorption-based imaging methods, and therefore new and complementary information. Compared with other phase-contrast imaging techniques, x-ray grating interferometry can overcome some of the problems that have impaired the applications of x-ray phase-contrast radiography and phase tomography. Recently, special attention has been paid to the development of quantitative phase retrieval methods, which is mandatory to perform x-ray phase tomography, to achieve material identification, to differentiate distinct tissues, etc. Typically, the phase-stepping approach has been utilized for phase retrieval in grating interferometry. This method requires a grating scanning and acquisition of multiple radiographic projections, and therefore is disadvantageous in terms of imaging speed and radiation damage. Here we present an innovative, highly sensitive approach, dubbed ‘reverse projection’ (RP), for quantitative phase retrieval. Compared with the phase-stepping approach, the present RP method abandons grating scanning completely, and thus is advantageous due to its much higher efficiency and the reduced radiation dose, without the degradation of reconstruction quality. This review presents a detailed explanation of the principle of the RP method. Both radiography and phase tomography experiments are performed to validate the RP method. We believe that this new technique will find widespread applications in biomedical imaging and in vivo studies. [ABSTRACT FROM AUTHOR]

X-ray micro-CT is a powerful tool to visualize without damage details of the inner structures of beetles, the largest order of insects with a hard external skeleton. This contribution shows the three-dimensional (3D) reconstruction of the head morphology of three rove beetle species (Insecta, Coleoptera, Staphylinidae)- Noddia sp., Creophilus maxillosus, and Hesperosoma sp.-using X-ray microtomography at a spatial resolution of 6 μm. The details of skeletal muscle fiber insertions are described, giving a comprehensive overview of mandible mobility and organization. With the support of 3D rendering, we discuss the relationship among the mandible forms, the development of the muscles controlling the movement, and the head morphology. The well-developed posterior part of the head capsule is always accompanied by a well-developed mandible, a large adductor muscle, and a large apodeme for the wide areas of the muscle fiber attachment. In Noddia sp., muscles connected to the posterolateral angle of the head capsule are mainly short muscles, whereas in Creophilus maxillosus, the latter are mainly long muscles, and in Hesperosoma sp. no mandible adductor muscle fibers are present on the posterolateral angle of the head capsule. These results offer new invaluable information regarding the biting functions of beetle mandibles and the trend of their morphological change during their long-term evolution. [ABSTRACT FROM AUTHOR]

Impressive developments in X-ray imaging are associated with X-ray phase contrast computed tomography based on grating interferometry, a technique that provides increased contrast compared with conventional absorption-based imaging. A new 'single-step' method capable of separating phase information from other contributions has been recently proposed. This approach not only simplifies data-acquisition procedures, but, compared with the existing phase step approach, significantly reduces the dose delivered to a sample. However, the image reconstruction procedure is more demanding than for traditional methods and new algorithms have to be developed to take advantage of the 'single-step' method. In the work discussed in this paper, a fast iterative image reconstruction method named OSEM (ordered subsets expectation maximization) was applied to experimental data to evaluate its performance and range of applicability. The OSEM algorithm with different subsets was also characterized by comparison of reconstruction image quality and convergence speed. Computer simulations and experimental results confirm the reliability of this new algorithm for phase-contrast computed tomography applications. Compared with the traditional filtered back projection algorithm, in particular in the presence of a noisy acquisition, it furnishes better images at a higher spatial resolution and with lower noise. We emphasize that the method is highly compatible with future X-ray phase contrast imaging clinical applications. [ABSTRACT FROM AUTHOR]

Purpose: Sample radiation damage is one of the main drawbacks limiting applications of the x-ray phase-contrast imaging method. Recently, for x-ray grating-based phase contrast imaging, the reverse projection (RP) method has been proposed by Zhu et al. [Proc. Natl. Acad. Sci. U.S.A. 107, 13576-13581 (2010)]. Compared to the conventional phase stepping technique, the RP method allows a strong reduction of the exposure time and minimization of the errors induced by mechanical vibrations. However, so far, it has only been considered for parallel beam illumination, typical of a synchrotron radiation source. In this paper, a generalization of the RP method from parallel beam geometry to fan beam geometry was presented and discussed. Methods: Within parallel beam geometry, the RP method utilizes the conjugate characteristic between reverse projection images. Nevertheless, this characteristic is not directly satisfied for fan beam geometry. In this study, a phantom composed of known materials was constructed and the projection images of the phantom were calculated in a fan beam geometry. By considering single ray, the conjugate images of the projection images were derived from the projection dataset. After that, using the modified RP method the authors retrieved phase and absorption information from paired images. Results: Extracted phase and absorption information of the phantom were in good agreement with theoretical values. Additionally, the slice reconstruction was performed and the results turned out to be in the authors' expectation. Conclusions: Theoretical calculations and numerical simulations confirm both feasibility and validity of the RP method under fan beam illumination. Because this method is simple, fast, and releases a relatively low dose, the authors believe that this research is very useful for the x-ray phase contrast imaging applications in clinical diagnosis, bioresearch, and industrial nondestructive testing. [ABSTRACT FROM AUTHOR]

Abstract: Understanding the hierarchical organizations of molecules and organelles within the interior of large eukaryotic cells is a challenge of fundamental interest in cell biology. Light microscopy is a powerful tool for observations of the dynamics of live cells, its resolution attainable is limited and insufficient. While electron microscopy can produce images with astonishing resolution and clarity of ultra-thin (<1μm thick) sections of biological specimens, many questions involve the three-dimensional organization of a cell or the interconnectivity of cells. X-ray microscopy offers superior imaging resolution compared to light microscopy, and unique capability of nondestructive three-dimensional imaging of hydrated unstained biological cells, complementary to existing light and electron microscopy. Until now, X-ray microscopes operating in the “water window” energy range between carbon and oxygen k-shell absorption edges have produced outstanding 3D images of cryo-preserved cells. The relatively low X-ray energy (<540eV) of the water window imposes two important limitations: limited penetration (<10μm) not suitable for imaging larger cells or tissues, and small depth of focus (DoF) for high resolution 3D imaging (e.g., ~1μm DoF for 20nm resolution). An X-ray microscope operating at intermediate energy around 2.5keV using Zernike phase contrast can overcome the above limitations and reduces radiation dose to the specimen. Using a hydrated model cell with an average chemical composition reported in literature, we calculated the image contrast and the radiation dose for absorption and Zernike phase contrast, respectively. The results show that an X-ray microscope operating at ~2.5keV using Zernike phase contrast offers substantial advantages in terms of specimen size, radiation dose and depth-of-focus. [Copyright &y& Elsevier]

Abstract: Understanding the mechanism of degradation in solid oxide fuel cells (SOFCs) using nickel/yttria-stabilized zirconia (Ni-YSZ) as the anode material is very important for the optimization of cell performance. In this work, the effects of thermal cycling on the microstructure of the Ni-YSZ anode are explored using the three-dimensional X-ray nano computed tomography (nano-CT) imaging technique. It is found that the average Ni particle size increased with thermal cycling, which is associated with the decreased connectivity of the Ni phase and the three-phase-boundary (TPB) length. Moreover, the conductivities of the anode samples are also reduced with the increase in thermal cycle times. The implication of these observations is discussed in terms of the relationship between the conductivity and connectivity of the Ni phase. [Copyright &y& Elsevier]

Abstract: The 4W1A beamline at the Beijing Synchrotron Radiation Facility (BSRF) had been dedicated to researches in the field of X-ray phase contrast imaging. In both available layouts, e.g., in-line imaging and diffraction enhanced imaging, a spatial resolution better than 10μm has been achieved and an X-ray phase contrast CT system has been installed and tested on the beamline. With or without analyzer, it can work either in in-line or the diffraction enhanced mode. [Copyright &y& Elsevier]

Abstract: A new diffraction-enhanced imaging (DEI) set-up was designed and constructed at Beijing Synchrotron Radiation Facility. The size of imaging beam cross section is the same as that of incident “white” X-ray beam in the new set-up. While in the original set-up, the size is always limited in one direction. Thus, larger samples can be imaging in a single exposure without need for scanning of the sample and detector in the new set-up. Choosing a fly as sample, DEI and DEI-computed-tomography (CT) experiments were carried out using the new set-up. Experimental results show that the spatial resolution of the CT image is in the tens of microns. [Copyright &y& Elsevier]

Abstract: Diffraction-enhanced imaging computer tomography (DEI-CT) is a new method to provide the object''s inner information. Previous reports demonstrated its applicability in soft and hard tissue imaging. Here, we provide further evidence for the improved overall image quality and for the option to distinguish the inner microstructures of the guinea pig''s cochlea. Data has shown the details of the cochlea''s inner microstructure such as vestibular membrane which only have 6μm. A better knowledge of these microstructures may be relevant to achieve progress in the otology of clinical anatomization. [Copyright &y& Elsevier]