1. Multidimensional profiling of human T cells reveals high CD38 expression, marking recent thymic emigrants and age-related naive T cell remodeling.
- Author
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Bohacova, Pavla, Terekhova, Marina, Tsurinov, Petr, Mullins, Riley, Husarcikova, Kamila, Shchukina, Irina, Antonova, Alina Ulezko, Echalar, Barbora, Kossl, Jan, Saidu, Adam, Francis, Thomas, Mannie, Chelsea, Arthur, Laura, Harridge, Stephen D.R., Kreisel, Daniel, Mudd, Philip A., Taylor, Angela M., McNamara, Coleen A., Cella, Marina, and Puram, Sidharth V.
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CD38 antigen , *T cells , *SOX transcription factors , *CYTOMETRY , *THYMUS - Abstract
Thymic involution is a key factor in human immune aging, leading to reduced thymic output and a decline in recent thymic emigrant (RTE) naive T cells in circulation. Currently, the precise definition of human RTEs and their corresponding cell surface markers lacks clarity. Analysis of single-cell RNA-seq/ATAC-seq data distinguished RTEs by the expression of SOX4, IKZF2, and TOX and CD38 protein, whereby surface CD38hi expression universally identified CD8+ and CD4+ RTEs. We further determined the dynamics of RTEs and mature cells in a cohort of 158 individuals, including age-associated transcriptional reprogramming and shifts in cytokine production. Spectral cytometry profiling revealed two axes of aging common to naive CD8+ and CD4+ T cells: (1) a decrease in CD38++ cells (RTEs) and (2) an increase in CXCR3hi cells. Identification of RTEs enables direct assessment of thymic health. Furthermore, resolving the dynamics of naive T cell remodeling yields insight into vaccination and infection responsiveness throughout aging. [Display omitted] • Human RTEs are epigenetically and transcriptionally defined by SOX4, IKZF2, and TOX • Both CD8+ and CD4+ RTEs are characterized by high surface expression of CD38 • CD38 expression is a reliable RTE marker also under chronic and acute inflammation • Naive T cells show an age-related decline in CD38++ RTEs and an increase in CXCR3hi cells Identifying human T cells that have recently emigrated from the thymus remains problematic. Here, Bohacova et al. categorize recent thymic emigrants with high CD38 expression as their universal surface marker. Additionally, they explore the transcriptional and epigenetic landscape of naive CD8+ and CD4+ T cells, revealing shared axes of aging. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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