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Propane-1,3-diaminium squarate dihydrate, C3H12N22+·C4O42−·2H2O, results from the proton-transfer reaction of propane-1,3-di amine with squaric acid and subsequent crystallization from aqueous medium. The title compound crystallizes in the tetragonal crystal system (space group P4bm) with Z = 2. The squarate dianion belongs to the point group D4h and contains a crystallographic fourfold axis. The propane-1,3-diaminium dication exhibits a C2v-symmetric all-anti conformation and resides on a special position with mm2 site symmetry. The orientation of the propane-1,3-diaminium ions makes the crystal structure polar in the c-axis direction. The solid-state supramolecular structure features a triperiodic network of strong hydrogen bonds of the N—H⋯O and O—H⋯O types. [ABSTRACT FROM AUTHOR]

The title compound, 3‐[(benzo‐1,3‐dioxol‐5‐yl)amino]‐4‐methoxycyclobut‐3‐ene‐1,2‐dione, C12H9NO5 (3), is a precursor to an antimycobacterial squaramide. Block‐shaped crystals of a monoclinic form (3‐I, space group P21/c, Z = 8, Z′ = 2) and needle‐shaped crystals of a triclinic form (3‐II, space group P‐1, Z = 4, Z′ = 2) were found to crystallize concomitantly. In both crystal forms, R22(10) dimers assemble through N—H...O=C hydrogen bonds. These dimers are formed from crystallographically unique molecules in 3‐I, but exhibit crystallographic Ci symmetry in 3‐II. Twinning by pseudomerohedry was encountered in the crystals of 3‐II. The conformations of 3 in the solid forms 3‐I and 3‐II are different from one another but are similar for the unique molecules in each polymorph. Density functional theory (DFT) calculations on the free molecule of 3 indicate that a nearly planar conformation is preferred. [ABSTRACT FROM AUTHOR]

Reaction of 4,6-dinitroresorcinol (1) and the nitrogen base 1,4-diazabicyclo[2·2·2]octane (2) affords the 1:2 salt and proton-transfer compound 1,4-diazabicyclo[2·2·2]octane-1,4-diium bis(5-hydroxy-2,4-dinitrophenolate) (3). Compound 3 crystallizes in the triclinic crystal system (space group P-1) with a = 8.3242(5) Å, b = 11.9915(7) Å, c = 12.4595(7) Å, α = 116.282(2)°, β = 100.576(3)°, γ = 101.051(2)°, 1042.30(11) Å3 and Z = 2. The dication 2- H 2 2 + forms charge assisted donating bifurcated N+−H⋅⋅⋅O− hydrogen bonds to the phenolate moieties of two monoanions of 1. The latter exhibit an intramolecular O−H⋅⋅⋅O hydrogen bond between the hydroxy group and the nitro group in ortho position. The crystal structure of 3 features pseudo B-centering of the lattice, which relates the two crystallographically distinct monoanions of 1 by a pseudo translation. The possible B-centring is broken by the ethylene groups of 2-H22+, which are related in neighbouring molecules by centres of symmetry. [ABSTRACT FROM AUTHOR]

The crystal structure and in vitro antimycobacterial properties of N-(2-fluoroethyl)-1-[(6-methoxy-5-methylpyrimidin-4-yl)methyl]-1H-benzo[d]imidazole-4-carboxamide (C17H18FN5O2, 1), a previously reported benzimidazoleanalogue of the 1,4-azaindole-based antituberculosis drug candidate TBA-7371, are reported. The structure determination was achieved using Hirshfeld atomrefinement. Compound 1 crystallizes in the triclinic system (space group P1)with two molecules in the asymmetric unit (Z0 = 2). The two crystallographicallydistinct molecules exhibit a similar conformation with the amide groups in a Zconformation, forming an intramolecular Namide--H· · ·Nbenzimidazole hydrogenbond. The most significant supramolecular feature in the solid-state is arelatively short Cbenzimidazole--H· · ·Npyrimidine hydrogen bond. Antimycobacterialtesting confirmed in vitro activity against Mycobacterium smegmatis, but nogrowth inhibtion of Mycobacterium abscessus was found. [ABSTRACT FROM AUTHOR]

Two polymorphic forms of 1-(4-methylpyridin-2-yl)thiourea (1) and the crystal and molecular structures of the 2-aminothiazoles N-(4-methylpyridin-2-yl)-4-(pyridin-2-yl)thiazol-2-amine (2) and N-(4-methylpyridin-2-yl)-4-(pyrazin-2-yl)thiazol-2-amine (3), derived from 1 and the respective α-bromoketone via the Hantzsch reaction, are described. Both polymorphic forms 1α (space group P21/c, Z = 4) and 1β (space group P21/n, Z = 8) crystallize in the monoclinic system but exhibit distinctly different intermolecular hydrogen bonding patterns. Compound 2 (orthorhombic, space group Pca21, Z = 8) forms polymeric N–H⋯N hydrogen-bonded zigzag tapes in the polar crystal structure, with a significant twisting between the thiazole and pyridine rings. In contrast, the crystal structure of 3 (monoclinic, space group P21/c, Z = 4) features nearly planar centrosymmetric N–H⋯N hydrogen-bonded dimers, which are laterally joined through long C–H⋯N contacts, affording a π⋯π stacked layered structure. Two polymorphs of 1-(4-methylpyridin-2-yl)thiourea and the crystal and molecular structures of two 2-aminothiazoles, derived from 1-(4-methylpyridin-2-yl)thiourea and α-bromoketones via Hantzsch reaction, are reported. [ABSTRACT FROM AUTHOR]

The synthesis and structural characterization of N-(6-methoxypyridin-3-yl)-4-(pyridin-2-yl)thiazol-2-amine mono-hydrobromide monohydrate (3) and N-(6-methoxypyridin-3-yl)-4-(pyrazin-2-yl)thiazol-2-amine mono-hydrobromide 0.35 methanol solvate (4) are reported. The crystal structures of 3 (monoclinic, space group P21/n, Z = 4) and 4 (monoclinic, space group, C2/c, Z = 8) feature N,4-diheteroaryl 2-aminothiazoles showing similar molecular conformations but different sites of protonation and thus distinctly different intermolecular hydrogen bonding patterns. In 3, Namine–H⋯Br−, N+pyridine–H⋯Owater, and Owater–H⋯Br− hydrogen bonds link protonated N-(6-methoxypyridin-3-yl)-4-(pyridin-2-yl)thiazol-2-amine and water molecules and bromide anions into a three-dimensional hydrogen-bonded network, whereas intermolecular N+methoxypyridine–H⋯Npyrazine hydrogen bonds result in hydrogen-bonded zigzag chains of protonated N-(6-methoxypyridin-3-yl)-4-(pyrazin-2-yl)thiazol-2-amine molecules in 4. [ABSTRACT FROM AUTHOR]

Abstract: The crystal and molecular structure of (E)-N,N′-dicyclohexylacetamidine (1) is described. Crystalline material of 1 was obtained by sublimation. Single-crystal X-ray analysis revealed a centrosymmetric triclinic structure (space group ) with six molecules in the asymmetric unit (Z′=6). The six crystallographically distinct molecules all exhibit an E-syn structure, but differ in the orientation of the cyclohexyl groups about the central acetamidine moiety. In the crystal, the molecules form polymeric helices via NN hydrogen bonds. The crystal structure comprises two crystallographically distinct helices of opposite handedness (P and M form). The characterisation of 1 in the solid-state is augmented by powder X-ray diffraction, infrared spectroscopy and thermal analysis. Density functional theory (DFT) structure optimisation and frequency calculation were performed at the B3LYP/cc-pVTZ level. The DFT results for the isolated molecule are compared with the experimental results for the solid-state. [Copyright &y& Elsevier]

We report the synthesis, spectroscopic and structural elucidation of two prolinamide derivatives of squaric acid, i.e. prolinamide ester amide of squaric acid ethyl ester (1) and prolinamide diamide of squaric acid dihydrate (2). Both compounds crystallize in non-centrosymmetric space groups, monoclinic P21 (1) and orthorhombic P212121 (2), respectively. For first time in the literature the crystal structure of homodiamide of amino acid amide of squaric acid is reported. The data for heterodiamides is also absent. Supramolecular zig-zag chains by hydrogen bonds of H2N–C=O⋯HNH (3.020 Å) and HNH⋯O=C(Sq) (2.972 Å) types with the participation of amide and squaric acid (Sq) fragments, –C=O–NH2 and O=C(Sq) are refined in (1). A helix supramolecular structure is formed in (2) by moderate intermolecular HNH⋯O=C(NH2) hydrogen bond with length of 2.947 Å. The two crystallographical non-equivalent water molecules stabilized the helix by interactions of types HOH⋯O=C(Sq) (2.917 Å), HOH⋯O=C(NH2) (2.899 Å), H2O⋯NH2(C=O) (2.972 Å), respectively. Optical and magnetic properties are investigated with a view to explain the correlation structure-properties of the newly synthesized molecules. [Copyright &y& Elsevier]

• BTZ043 crystallizes with two diastereomeric conformers featuring pseudo symmetry. • VT 13C NMR in CDCl 3 indicates a rotational barrier of ΔG ǂ = 14.6 ± 1 kcal mol−1. • DFT calculations reveal two barriers to rotation about the C2 BTZ −N piperidine bond. A structural study of (S)-2-(2-methyl-1,4-dioxa-8-azaspiro[4.5]decan-8-yl)-8-nitro-6-(trifluoromethyl)-4 H -benzo[ e ][1,3]thiazin-4-one (BTZ043), a promising antitubercular drug candidate, is reported. The chiral compound crystallizes in the triclinic system (space group P 1) with two molecules in the asymmetric unit (Z ' = 2), which are related by pseudo inversion symmetry. The two crystallographically distinct molecules represent diastereomeric conformers, which can be transformed to one another by an approximate 180° rotation about the C2 BTZ −N piperidine bond connecting the (S)-2-methyl-1,4-dioxa-8-azaspiro[4.5]decane side chain to C2 of the benzothiazinone (BTZ) scaffold. Variable temperature 13C NMR measurements of BTZ043 in CDCl 3 in the range 248-333 K indicate a rotational barrier of E a = 17.1 ± 1 kcal mol−1 and ΔG ǂ = 14.6 ± 1 kcal mol−1. DFT calculations reveal two barriers to rotation about the C2 BTZ −N piperidine bond, one larger than the other by 4.1 kcal mol−1. [Display omitted] [ABSTRACT FROM AUTHOR]