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This 10-year field data study explores the relevance of water level fluctuations in driving the shift from a free-floating plant (FFP) to a phytoplankton dominated state in a shallow floodplain lake from the Lower Paraná River. The multi-year natural flood pulse pattern in the Lower Paraná River drove the ecosystem regime from a FFP-dominant state during very high waters (1998-1999) to absolute phytoplankton prevalence with blooms of nitrogen fixing Cyanobacteria during extreme low waters (2008-2009). Satellite images support the observed changes over the decade and show the decrease of the surface lake area covered by FFP as well as the modification of the spectral firm in open waters, which documents the significant increases in phytoplankton chlorophyll a concentrations. We discuss the possibility that, despite a slow eutrophication in these highly vegetated systems, water level changes and not nutrients account for the shift from a floating macrophyte community to phytoplankton dominance. Cyclic shifts may occur in response to the seasonal floodpulse, but more strongly, as indicated by our results, in association to the extreme drought and flood events related to the El Niño Southern Oscillation, which is linked to discharge anomalies in the Paraná River. [ABSTRACT FROM AUTHOR]

1. Structure and dynamics of phytoplankton were studied at six sites in a reach of the Lower Paraná River floodplain, from the main course to a marginal shallow lake, connected through a stream. This system is defined as a water–water ecotone and thus, the aim of this work is to analyse the spatial changes of phytoplankton along the transitional system. 2. Temporal fluctuations in number of species and phytoplankton density were more pronounced in the river than in the shallow lake. Even though most species were ubiquitous, there was a clear segregation of the most abundant populations across the ecotone. Aulacoseira granulata var. granulata and other centric diatoms decreased towards the lentic system. 3. Transparency varied according to river discharge, being higher in the lake during high water phases, while the opposite behaviour was observed during dry periods. These fluctuations were related to precipitation and resuspension processes. 4. Nitrate concentration diminished towards the lake while soluble reactive phosphorus remained fairly homogeneous across the ecotone. [ABSTRACT FROM AUTHOR]