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Gastro-intestinal nematodes, especially Haemonchus contortus, are widespread pathogenic parasites of small ruminants. Studying their spatial genetic structure is as important as studying host genetic structure to fully understand host-parasite interactions and transmission patterns. For parasites having a simple life cycle (e.g., monoxenous parasites), gene flow and spatial genetic structure are expected to strongly rely on the socio-spatial behavior of their hosts. Based on five microsatellite loci, we tested this hypothesis for H. contortus sampled in a wild Mediterranean mouflon population (Ovis gmelini musimon × Ovis sp.) in which species- and environment-related characteristics have been found to generate socio-spatial units. We nevertheless found that their parasites had no spatial genetic structure, suggesting that mouflon behavior was not enough to limit parasite dispersal in this study area and/or that other ecological and biological factors were involved in this process, for example other hosts, the parasite life cycle, or the study area history., (© E. Portanier et al., published by EDP Sciences, 2019.)

Kalavan 1 is an Epigravettian hunting campsite in the Aregunyats mountain chain in northeastern Armenia (Lesser Caucasus). The site lies at an elevation of 1640 m in a bottleneck that controls the descent into the Barepat Valley from the alpine meadows above. The lithic and faunal assemblages show evidence of the production of hunting weapons, the hunting and targeting of wild sheep (Ovis orientalis), and the constitution of animal product reserves. A seasonal occupation of the site was proposed within a model of occupation by Epigravettian hunter-gatherers that involved a search for obsidian resources in high altitude sources from the spring to the summer and settling at Kalavan 1 at the end of summer or during autumn to coincide with the migration of wild herds from the alpine meadows to the valley. A key parameter of this model is wild sheep ethology, with a specifically seasonal vertical mobility, based on observations from contemporary mouflon populations from the surrounding areas. In this study, the vertical mobility of Paleolithic wild sheep was directly investigated through sequential isotope analysis (δ(18)O, δ(13)C) in teeth. A marked seasonality of birth is suggested that reflects a physiological adaptation to the strong environmental constraints of this mountainous region. Most importantly, a recurrent altitudinal mobility was demonstrated on a seasonal basis, which confirms that wild sheep migrated from lowland areas that they occupied in the winter and then moved to higher altitude meadows during the summer. Last, low inter-individual variability in the stable isotope sequences favors a hypothesis of accumulation for these faunal remains over a short time period. Overall, this new dataset strengthens the previous interpretations for Kalavan 1 and contributes to an understanding of the pattern of occupation of mountain territories by Epigravettian communities., (Copyright © 2016 Elsevier Ltd. All rights reserved.)

This study compares the effectiveness of two methods of sperm selection - Capripure(®) density-gradient centrifugation (DGC) and dextran swim-up (DSU) - in semen samples from Iberian ibex (Capra pyrenaica) and European mouflon (Ovis musimon). During the increasing photoperiod, Capripure(®) DGC improved the percentage of sperm with progressive motility (P<0.05) in ibexes, and selected 60.6% of the initial total number of spermatozoa contained in the ejaculate samples. In mouflon, Capripure(®) DGC selection was unaffected by photoperiod, had no influence on any sperm variable, and selected 47.8% of the initial total number of mouflon spermatozoa in ejaculate samples. Photoperiod had no influence on the effectiveness of DSU in either ibexes or mouflons. In the ibexes, DSU reduced (P<0.05) the percentage of sperm cells with morphological abnormalities, but only selected 11.3% of the initial total number of spermatozoa in ejaculate samples. In the mouflons, DSU had no significant influence on any sperm variable, and selected 27.8% of the initial total number. Capripure(®) DGC improved ibex and mouflon sperm motility (P<0.05) following 30min and 2h of post-centrifugation, stress-inducing incubation, respectively. In both ibexes and mouflon, sperm cells showing non-progressive motility were found after only 20 h of post-centrifugation incubation following Capripure(®) DGC selection. In conclusion, Capripure(®) DGC would seem a useful method for selecting the best spermatozoa from both ibex and mouflon ejaculates., (Copyright © 2014 Elsevier B.V. All rights reserved.)

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Hybridization between wild animals and feral individuals from closely related domestic species can occur when they share the same habitat. Such events are generally regarded as a threat to the genetic integrity and survival of established wild populations. The aim of this study is to confirm a hybridization between European mouflon and feral sheep on the Adriatic island Dugi Otok, where a group of individuals phenotypically indicative of a possible introgression was photographed. Using an ovine medium-density SNP array genotypes, we provided genetic evidence of recent gene admixture between the two species. The ADMIXTURE analysis suggests that two hybrid individuals had 82.2% and 94.1% of their ancestry attributable to feral sheep, respectively, with the rest of the mouflon in origin. NEWHYBRIDS analysis estimated the combined probabilities for the putative hybrid individuals belonging to one of the hybrid classes at 87.0% and 90.1%, respectively. The main phenotypic differences in the hybrids were observed in the shape of the horns, a stronger horn circumference than in the mouflon and weaker than for the sheep, pronounced horn rings, a shorter tail, and intermediate color. We therefore recommend constant monitoring of the purity of the mouflon population to maintain its genetic integrity. In addition, all feral sheep should be removed from the wild, and released sheep raised in semi-wild conditions should be better controlled. [ABSTRACT FROM AUTHOR]

Once widespread in their homelands, the Anatolian mouflon (Ovis gmelini anatolica) and the Cyprian mouflon (Ovis gmelini ophion) were driven to near extinction during the 20th century and are currently listed as endangered populations by the International Union for Conservation of Nature. While the exact origins of these lineages remain unclear, they have been suggested to be close relatives of domestic sheep or remnants of proto-domestic sheep. Here, we study whole genome sequences of n = 5 Anatolian mouflons and n = 10 Cyprian mouflons in terms of population history and diversity, comparing them with eight other extant sheep lineages. We find reciprocal genetic affinity between Anatolian and Cyprian mouflons and domestic sheep, higher than all other studied wild sheep genomes, including the Iranian mouflon (O. gmelini). Studying diversity indices, we detect a considerable load of short runs of homozygosity blocks (<2 Mb) in both Anatolian and Cyprian mouflons, reflecting small effective population size (N e). Meanwhile, N e and mutation load estimates are lower in Cyprian compared with Anatolian mouflons, suggesting the purging of recessive deleterious variants in Cyprian sheep under a small long-term N e, possibly attributable to founder effects, island isolation, introgression from domestic lineages, or differences in their bottleneck dynamics. Expanding our analyses to worldwide wild and feral Ovis genomes, we observe varying viability metrics among different lineages and a limited consistency between viability metrics and International Union for Conservation of Nature conservation status. Factors such as recent inbreeding, introgression, and unique population dynamics may have contributed to the observed disparities. [ABSTRACT FROM AUTHOR]

Simple Summary: The European mouflon (Ovis aries musimon) is a non-domesticated and highly adaptable species. It is a descendant of the primitive domestic sheep (Ovis aries), with native populations inhabiting Sardinia and Corsica since the Neolithic age. In the 1950s, as a consequence of intense hunting and poaching, some animals were relocated to nearby islands (Giglio Island and others) as a conservation strategy to avoid extinction risks. Since then, this isolated way of life has served as a "time capsule" in which the Ovis aries musimon has maintained ancestral genetic traits no longer detectable in the current native Sardinian population. Our study findings report the application, in field conditions, of short- and long-term storage techniques of immature cumulus–oocyte complexes (COCs) which were then transported to the laboratory for in vitro maturation (IVM) and assessment of nuclear and cytoplasmic maturation. Both techniques mentioned above can be used for oocyte storage and in vitro culture. However, it is still necessary to optimize them, particularly when used in taxonomically related and endangered wild species for the preservation of ancestral genetic traits and to address the risk of extinction of native populations. Reproductive biotechnologies can be used as a supporting tool, through gamete conservation and in vitro embryo production, in the preservation of invaluable and irreplaceable animal genetic resources. In the present study, immature mouflon cumulus–oocyte complexes (COCs) collected from ovariectomized female ovaries underwent short- or long-term conservation (24 h maintained in Earle's/Hank's (EH) medium or vitrification) under field conditions and afterwards transported to the laboratory where they were cultured for in vitro maturation (IVM) and assessed for oocyte meiotic competence and bioenergetic–oxidative status. Utilization of both storage techniques led to COC morphology preservation, as well as cumulus expansion and oocyte meiotic resumption after the IVM procedure. Quantitative bioenergetic–oxidative parameters were reduced in vitrified oocytes compared with EH ones. Immature COC storage needs to be optimized in both domesticated and non-domesticated sheep as a part of the strategy to avoid the loss of valuable genotypes of these animal species. [ABSTRACT FROM AUTHOR]

The domestication of animals started around 12,000 years ago in the Near East region. This "endless process" is characterized by the gradual accumulation of changes that progressively marked the genetic, phenotypic and physiological differences between wild and domesticated species. The main distinctive phenotypic characteristics are not all directly attributable to the human-mediated selection of more productive traits. In the last decades, two main hypotheses have been proposed to clarify the emergence of such a set of phenotypic traits across a variety of domestic species. The first hypothesis relates the phenotype of the domesticated species to an altered thyroid hormone-based signaling, whereas the second one relates it to changes in the neural crest cells induced by selection of animals for tameness. These two hypotheses are not necessarily mutually exclusive since they may have contributed differently to the process over time and space. The adaptation model induced by domestication can be adopted to clarify some aspects (that are still controversial and debated) of the long-term evolutionary process leading from the wild Neolithic mouflon to the current domestic sheep. Indeed, sheep are among the earliest animals to have been domesticated by humans, around 12,000 years ago, and since then, they have represented a crucial resource in human history. The aim of this review is to shed light on the molecular mechanisms and the specific genomic variants that underlie the phenotypic variability between sheep and mouflon. In this regard, we carried out a critical review of the most recent studies on the molecular mechanisms that are most accredited to be responsible for coat color and phenotype, tail size and presence of horns. We also highlight that, in such a complicate context, sheep/mouflon hybrids represent a powerful and innovative model for studying the mechanism by which the phenotypic traits related to the phenotypic responses to domestication are inherited. Knowledge of these mechanisms could have a significant impact on the selection of more productive breeds. In fact, as in a journey back in time of animal domestication, the genetic traits of today's domestic species are being progressively and deliberately shaped according to human needs, in a direction opposite to that followed during domestication. [ABSTRACT FROM AUTHOR]

The relevance of hair sheep and their place in animal agriculture in the United States is expanding. Fueled by the exigency of sustainable agricultural practices, the integration of hair sheep to replace their wool breed counterparts is essential. Approximately 10% of all sheep globally are hair sheep but they are growing in numbers and production each year. Hair sheep breeds are widely diverse but share a common origin in tropical countries. Most of the prominent breeds were mindfully developed and crossed with wool breeds (namely, the Mouflon sheep) to improve the economically important traits of the animal. This genetic development has proven successful; hair sheep are considered highly advantageous in carcass quality, meat taste, litter size, and leather quality. Aside from those economically important traits, hair sheep are also advantageous in production traits, such as parasitic resistance, disease resistance, heat tolerance, sperm quality, and nutritional efficiency. These identified traits of hair sheep are highly desirable and contribute to the hair sheep’s positive reputation. However, hair sheep pose some disadvantages, such as an average or below average scrotal circumference, lower meat yield (although high in quality), meat with higher cholesterol than that of the wool breeds, and the lack of wool leaving the hair sheep susceptible to cold stress. These disadvantages can be mitigated with genetic selection and production techniques. The importance to further developing hair sheep is irrefutable. This review focuses on the fundamental and applied science of the most common hair sheep breeds and is expected to be useful for students, scientists, and producers of hair sheep. [ABSTRACT FROM AUTHOR]

As one of the earliest livestock, sheep (Ovis aries) were domesticated in the Fertile Crescent about 12,000--10,000 years ago and have a nearly worldwide distribution today. Most of our knowledge about the timing of their expansions stems from archaeological data but it is unclear how the genetic diversity of modern sheep fits with these dates. We used whole-genome sequencing data of 63 domestic breeds and their wild relatives, the Asiatic mouflon (O. gmelini, previously known as O. orientalis), to explore the demographic history of sheep. On the global scale, our analysis revealed geographic structuring among breeds with unidirectional recent gene flow from domestics into Asiatic mouflons. We then selected 4 representative breeds from Spain, Morocco, the United Kingdom, and Iran to build a comprehensive demographic model of the Western sheep expansion. We inferred a single domestication event around 11,000 years ago. The subsequent westward expansion is dated to approximately 7,000 years ago, later than the original Neolithic expansion of sheep and slightly predating the Secondary Product Revolution associated with wooly sheep. We see some signals of recent gene flow from an ancestral population into Southern European breeds which could reflect admixture with feral European mouflon. Furthermore, our results indicate that many breeds experienced a reduction of their effective population size during the last centuries, probably associated with modern breed development. Our study provides insights into the complex demographic history of Western Eurasian sheep, highlighting interactions between breeds and their wild counterparts. [ABSTRACT FROM AUTHOR]

In theoretical biology, a prevailing hypothesis posits a profound interconnection between effective population size (Ne), genetic diversity, inbreeding, and genetic load. The domestication and improvement processes are believed to be pivotal in diminishing genetic diversity while elevating levels of inbreeding and increasing genetic load. In this study, we performed a whole genome analysis to quantity genetic diversity, inbreeding, and genetic load across seven wild Ovis species and five domesticated sheep breeds. Our research demonstrates that the genetic load and diversity of species in the genus Ovis have no discernible impact on recent Ne, and three species within the subgenus Pachyceros tend to carry a higher genetic load and lower genetic diversity patterns. The results coincide with these species' dramatic decline in population sizes within the subgenus Pachyceros ~80–250 thousand years ago. European mouflon presented with the lowest Ne, lower genetic diversity, and higher individual inbreeding coefficient but a lower genetic load (missense and LoF). This suggests that the small Ne of European mouflon could reduce harmful mutations compared to other species within the genus Ovis. We showed lower genetic diversity in domesticated sheep than in Asiatic mouflon, but counterintuitive patterns of genetic load, i.e., lower weak genetic load (missense mutation) and no significant difference in strong genetic load (LoF mutation) between domestic sheep and Asiatic mouflon. These findings reveal that the "cost of domestication" during domestication and improvement processes reduced genetic diversity and purified weak genetic load more efficiently than wild species. [ABSTRACT FROM AUTHOR]

Simple Summary: The aim of the study was to analyse the community of parasitic mites in mouflons Ovis aries musimon from the Polish population introduced from the Mediterranean area. It was important to determine whether these parasites were specific to or typical of the genus Ovis and whether foreign species had appeared with the mouflons that might pose a parasitological threat to the native fauna or, according to the theory of parasites lost, the introduction contributed to the loss of the original fauna of parasitic mites and the subsequent repopulation of the vacant microhabitats by species typical of local bovids, cervids, and other ungulates. Forty-one mouflons, obtained by hunting, were examined. Two species of mites were found, including Demodex musimonis sp. nov., previously unknown demodecid mites, probably specific to the mouflon. These discoveries were accompanied by the tick Ixodes ricinus, a parasite common in many parts of Europe with a wide host range, and Lipoptena cervi, a parasitic fly typical of ungulates. The new species represents the first finding of a skin mite of the family Demodecidae in wild representatives of the caprine Caprinae, and the present study is the first to examine the parasitic arthropods of the mouflon, including ectoparasites and skin mites. Demodex musimonis sp. nov. occurred asymptomatically in the mouflon, and as a specific species does not pose a threat to the native fauna. In contrast, the presence of I. ricinus clearly indicates a broadening of the reservoir for pathogens transmitted by epidemiologically significant ectoparasite species in Europe. A greater understanding of mite biodiversity and ecology can explain their preference for microhabitats within host bodies, i.e., as ecto-, meso-, and endoparasites. Similarly, learning about the patterns formed by mite communities in wild animals can shed light on the mechanisms of parasitosis development in their domesticated counterparts. Hence, the present study examined the acarofauna of the mouflon, introduced to Poland in the early 20th century from a region of endemic occurrence. Forty-one individuals were examined for the presence of ectoparasites between 2010 and 2013; later, skin fragments were analysed for the presence of skin mites. A new species of Demodecidae, Demodex musimonis sp. nov., was discovered in the skin of the pasterns of 14.6% mouflons, as well as the ectoparasitic tick Ixodes ricinus (prevalence 29.3%) and ungulate-typical fly Lipoptena cervi (34.1%). However, no mites typical for ovine Ovis (Psorergatidae, Psoroptidae) were noted, nor any colonisation of microhabitats by species from local ungulates, resulting from the loss of original parasites during the introduction. A comparison of the acarofauna of the mouflon and domestic sheep Ovis aries aries suggests that a mite community with a complex structure and the co-occurrence of different families may be formed. However, it is not known whether the acarofauna of domestic sheep is derived from wild ancestors or the process of domestication. Even so, the peculiar Demodecidae must have been part of the natural parasitofauna of wild sheep, of which only D. musimonis sp. nov. has been recognised so far. [ABSTRACT FROM AUTHOR]

Contagious Ecthyma is an infectious disease of sheep and goats that causes dermatitis primarily on the lips, mouth and muzzle. In this article, we describe a case report of Contagious Ecthyma in a wild sheep (Ovis orientalis) in Fars province of Iran. One wild lamb was found in the border of Bamou National Park near human communities. The lamb died during the transfer to the rehabilitation center. Gross lesions were characterized by multifocal scabs, proliferative and crusty wart-like multiple lesions on the muzzle, nose, between the eyes, ears, neck and coronary band. Skin samples were taken from lesions and sent to the collaborator laboratory of Veterinary Organization for DNA extraction and analysis by PCR tests. Laboratory results confirmed Contagious Ecthyma (Orf) virus in the wild sheep. This is the first documented report of Orf in wild sheep from Bamou National Park. [ABSTRACT FROM AUTHOR]

The worldwide sheep population comprises more than 1000 breeds. Together, these exhibit a considerable morphological diversity, which has not been extensively investigated at the molecular level. Here, we analyze whole-genome sequencing individuals of 1,098 domestic sheep from 154 breeds, and 69 wild sheep from seven Ovis species. On average, we detected 6.8%, 1.0% and 0.2% introgressed sequence in domestic sheep originating from Iranian mouflon, urial and argali, respectively, with rare introgressions from other wild species. Interestingly, several introgressed haplotypes contributed to the morphological differentiations across sheep breeds, such as a RXFP2 haplotype from Iranian mouflon conferring the spiral horn trait, a MSRB3 haplotype from argali strongly associated with ear morphology, and a VPS13B haplotype probably originating from urial and mouflon possibly associated with facial traits. Our results reveal that introgression events from wild Ovis species contributed to the high rate of morphological differentiation in sheep breeds, but also to individual variation within breeds. We propose that long divergent haplotypes are a ubiquitous source of phenotypic variation that allows adaptation to a variable environment, and that these remain intact in the receiving population probably due to reduced recombination. Author summary: Introgression, introducing beneficial alleles from wild relatives, has been repeatedly proved to play important roles in adaptation to various environments during animal domestication and subsequent breeds formation. Several adaptive introgressions have been reported in domestic sheep, however, the systemic exploration is still lacking. Using a collection of more than 1000 individuals including 154 domestic breeds and seven wild relatives, we describe the genomic introgression spectrum across worldwide domestic sheep. Interestingly, we found several functional genes associated with morphological traits located in the introgressed regions. Besides, the frequency of highly divergent haplotypes in numerous introgressed regions are quite different among domestic breeds, indicating selection acted on these fragments. We speculated that the introgressed fragments contribute to the fast morphological differentiation of ~1,400 distinct domestic breeds. Deciphering the phenotypic variations in response to different introgressed haplotypes can reflect underlying breeding mechanisms. Overall, our work proves the important effect of introgression on sheep breeding, and shows how introgression, selection and recombination shape the genetic and phenotypic diversity. [ABSTRACT FROM AUTHOR]

Simple Summary: Often the overpopulation of wild animals can cause the destruction of the environment, for which the solutions are catches, culling, or birth control. Ovariectomy is a useful intervention for birth control. This report describes an innovative technique of gonadectomy, using a suitable anesthetic/analgesic protocol and an innovative device for the surgical ovariectomy, in the field conditions. This technique is simple to use, free of side effects, and can be used in a wildlife clinic. This report describes an innovative technique of ovariectomy useful for the birth control in the mouflon population. Thirteen female mouflons in reproductive age were submitted to ovariectomy via midline and left flank, using the AESCULAP CAIMAN® Seal and Cut device. The CAIMAN® was useful for clamping the ovary, stapling the vessels, and cutting in one stroke, thus reducing the surgery times. The day after the gonadectomy all animals were mobilized to another enclosure. In this study, no intraoperative and post-operative complications were observed, and all animals were gonadectomized without side effects. This study sets the guidelines for the surgical sterilization of mouflons in the field using anesthetic protocols and high-quality surgical procedures. [ABSTRACT FROM AUTHOR]

As one of the most successful domesticated animals in the Neolithic age, sheep gradually migrated all over the world with human activities. During the domestication process, remarkable changes have taken place in morphology, physiology, and behavior, resulting in different breeds with different characters via artificial and natural selection. However, the genetic background responsible for these phenotypic variations remains largely unclear. Here, we used whole genome resequencing technology to compare and analyze the genome differences between Asiatic mouflon wild sheep (Ovis orientalis) and Hu sheep (Ovis aries). A total of 755 genes were positively selected in the process of domestication and selection, and the genes related to sensory perception had directional evolution in the autosomal region, such as OPRL1, LEF1, TAS1R3, ATF6, VSX2, MYO1A, RDH5, and some novel genes. A missense mutation of c.T722C/p.M241T in exon 4 of RDH5 existing in sheep were found, and the T allele was completely fixed in Hu sheep. In addition, the mutation with the C allele reduced the retinol dehydrogenase activity encoding by RDH5, which can impair retinoic acid metabolism and further influenced the visual cycle. Overall, our results showed significant enrichment for positively selected genes involved in sensory perception development during sheep domestication; RDH5 and its variants may be related to the retinal degeneration in sheep. We infer that the wild sheep ancestors with weaker visual sensitivity were weeded out by humans, and the mutation was selective, swept by the dual pressures of natural and artificial selection. [ABSTRACT FROM AUTHOR]

Assessing the spatiotemporal behaviour of alien species is pivotal to designing effective management plans. Interspecific niche partitioning among ungulates is reported as a strategy to avoid direct interactions. The Mediterranean mouflon and wild boar are two ungulates introduced to Elba island for hunting and aesthetic purposes. We used intensive camera trapping to test whether species occupancy and temporal activity rhythms would vary in response to the presence or absence of the co-occurring species through multi-species occupancy modelling. Our findings report a lack of spatial and temporal segregation between the two species for the late spring–summer and late summer–autumn seasons. In contrast, results for the winter–early spring period suggest that spatial partitioning between wild boar and mouflon is present in areas with high artificial cover (e.g., paved roads). Animals may indeed exploit roads to move more rapidly in search of food; however, their occurrence in these areas seems to be influenced by the presence of the other species. [ABSTRACT FROM AUTHOR]

The aim of this work was to determine slaughter performances and carcass characteristics at European Mouflon (Ovis orientalis musimon Lin.). Also, for studied characteristics were determined the differences between European Mouflon (Ovis orientalis musimon Lin.) and hybrids (F1) obtained by crossbreeding between European Mouflon (Ovis ammon musimon Pal.) and the Romanian sheep breed Tigaie, raised under identical conditions. First generation hybrids (F1) were obtained by crossbreeding between females of sheep breed Tigaie and males of mouflon (FT x MM). The studied characteristics were slaughter yield on hot and chilled carcass, the participation percentage of the cut parts from live weight and from the whole carcass structure. At the age of 90 days 10 lambs were sacrificed (5 mouflons and 5 hybrids FTxMM). For slaughter performances, superior values were obtained from the hybrid lambs. Thus, slaughter yield calculated had higher at FTxMM (P

Background: Landscape anthropization and interaction between domestic and wild animals are the major contributing factors involved in the emergence of new pathogens in wild animals. Theileriosis is an emerging issue of wild ungulates, especially in the tropical and subtropical areas of the globe. Aims: The current study investigated the mouflon sheep for Theileria infection using molecular methods and hematological analysis. Methods: This study was conducted on a total of 103 captive wild mouflon sheep present in eight different recreational zoos, and wildlife parks in Punjab, Pakistan to investigate the genotypic prevalence of Theileria spp. by targeting 18S rRNA and molecular evidence for Theileria spillover between domestic and wild mouflon sheep by phylogenetic analysis. The association of assumed risk factors and the effect of Theileria spp. on various hematological parameters were also assessed. Results: The results depicted that Theileria spp. was prevalent in 8 (7.77%, CI 95%: 3.99-14.59%), and 11 (10.68%, CI 95%: 06.07-18.12%) animals based on microscopy, and PCR, respectively. The phylogenetic analysis of the 18S rRNA gene of Theileria spp. from mouflon revealed a close resemblance with T. annulata from domestic animals. The risk factor analysis revealed that tick infestation, enclosure hygiene, previous tick infestation history, and the presence of wooden logs in the enclosure were significantly (P<0.05) associated with the occurrence of Theileria spp. infection in the captive mouflon sheep of Pakistan. Furthermore, a significant reduction in blood parameters like PCV, RBCs count, Hb, and platelets was observed in Theileria-positive animals. Conclusion: This study is the first evidence at the molecular level to characterize the spillover of Theileria spp. between the captive wild mouflon sheep and domestic animals of Pakistan, and it will be useful in developing control strategies for emerging theileriosis in captive wild animals. [ABSTRACT FROM AUTHOR]

Background: Keratin-associated protein's (KRTAPs) are the major constituent proteins of cashmere fibre and have been implicated to have an important effect on the quality traits of this commercially valuable fibre. The objective of the present study was to determine the molecular characteristics of KRTAP9.2 gene in Pashmina (Cashmere) goat, known as Changthangi breed in J and K, India and well known for its finest fiber quality. Methods: We have studied the KRTAP9.2 gene expression status in hair follicles at different fiber development stages viz Anagen (growth) and Telogen (rest) in Changthangi goats of Kashmir and Ladakh region by performing quantitative Real Time PCR from fresh skin biopsies using gene specific primers. Furthermore, KRTAP9.2 structural models were generated and validated using various Bioinformatic tools. Result: Phylogenetic studies reveal close relation of KRTAP9.2 gene with Pantholops hodgsonii KRTAP9.2 (XM-005964828.1) and Ovis aries musimon KRTAP9.9 (XM-012152535.1). In our study we predicted a total of 20 KRTAP9.2 protein structures by QUARK and LOMET server and 5 structures by RaptorX, moreover, the validity of predicted structures was checked by using different parameters like RMSD value, C-Score, TM-value and ramachandran values, all parameters suggested structure predicted by RaptorX as better in our case. Real time PCR results showed expression of KRTAP9.2 in Pashmina hair follicles with a higher expression at the Telogen stage as compared to the Anagen stage. Owing to the structural importance of KRTAPs, such studies are indispensable for deciphering the molecular mechanism of pashmina growth which in turn will improve production, quality and diversity of pashmina fiber. [ABSTRACT FROM AUTHOR]

Leptospirosis is an infectious zoonotic disease of special importance in tropical regions of the world and is closely related to climatic conditions. In Mexico, at least eight Leptospira serogroups are known to affect sheep, but little is known about their distribution. The aim was to analyse the spatial distribution of seroreactive sheep to eight serogroups of Leptospira spp. through ecological niche modelling from the state of Veracruz. We carried out a cross‐sectional, multistage, and stratified epidemiological study, sampling 405 sheep in different regions of the state (north, center, and south). The sera were analysed using the microscopic agglutination test (MAT) to identify seropositivity to eight Leptospira serogroups (Icterohaemorrhagiae, Pyrogenes, Grippotyphosa, Canicola, Pomona, Hardjo, Wolffi, and Tarassovi). Management variables in the sampled herds were evaluated through a survey among the producers, which was analysed using the chi‐squared test for cross‐tabulation. Geospatial modelling was conducted using MAXENT and 19 climatic variables, and validation was carried out using the area under the curve (AUC). No positive animals were found for Pomona in any area of Veracruz, and there was only one case of seroreactivity to Grippotyphosa. The total seroprevalence found was 53.83% (95% confidence interval [CI] 48.84–58.75). The main serogroup found was Sejroe (55.31%, 95% CI 50.32‐60.20%), followed by Canicola (8.64%, 95% CI 6.17‐11.92%), Icterohaemorrhagiae (4.69%, 95% CI 2.93‐7.36%), Tarassovi (3.95%, 95% CI 2.35‐6.47%), Pyrogenes (2.47%, 95% CI 1.26‐4.64%), Australis (0.99%, 95% CI 0.32‐2.69%), and Grippotyphosa (0.25%, 95% CI 0.01‐1.59%). The predictive model for Australis was not significant. Acceptable predictive models (AUC > 0.7‐0.8) were found for Canicola, Icterohaemorrhagiae, Pyrogenes, and Tarassovi, while for Sejroe, it was excellent (AUC > 0.85); consequently, the climatic variables that most contributed to the model were those related to precipitation. The potential distribution of Pyrogenes, Icterohaemorrhagiae, and Canicola was located to a greater extent in the three regions; Pyrogenes and Tarassovi were distributed mostly in the north and central regions, and Sejroe was mostly located in the center and south of the state. Ecological niche modelling could support epidemiological control and surveillance programs for affected sheep herds in the state of Veracruz. [ABSTRACT FROM AUTHOR]

The abundance of domesticated sheep varieties and phenotypes is largely the result of long-term natural and artificial selection. However, there is limited information regarding the genetic mechanisms underlying phenotypic variation induced by the domestication and improvement of sheep. In this study, to explore genomic diversity and selective regions at the genome level, we sequenced the genomes of 100 sheep across 10 breeds and combined these results with publicly available genomic data from 225 individuals, including improved breeds, Chinese indigenous breeds, African indigenous breeds, and their Asian mouflon ancestor. Based on population structure, the domesticated sheep formed a monophyletic group, while the Chinese indigenous sheep showed a clear geographical distribution trend. Comparative genomic analysis of domestication identified several selective signatures, including IFI44 and IFI44L genes and PANK2 and RNF24 genes, associated with immune response and visual function. Population genomic analysis of improvement demonstrated that candidate genes of selected regions were mainly associated with pigmentation, energy metabolism, and growth development. Furthermore, the IFI44 and IFI44L genes showed a common selection signature in the genomes of 30 domesticated sheep breeds. The IFI44 c. 54413058 C>G mutation was selected for genotyping and population genetic validation. Results showed that the IFI44 polymorphism was significantly associated with partial immune traits. Our findings identified the population genetic basis of domesticated sheep at the whole-genome level, providing theoretical insights into the molecular mechanism underlying breed characteristics and phenotypic changes during sheep domestication and improvement. [ABSTRACT FROM AUTHOR]

Bluetongue (BT) is an emerging and re‐emerging communicable vector‐borne disease of animal health concern. A serosurvey was performed to assess exposure to BT virus (BTV) in zoo animals in Spain and to determine the dynamics of seropositivity in longitudinally sampled individuals during the study period. Serum samples were collected from 241 zoo animals belonging to 71 different species in five urban zoos (A‐E) in Spain between 2007 and 2019. Twenty‐four of these animals were longitudinally surveyed at three of the sampled zoos (zoos B, C and E) during the study period. Anti‐BTV antibodies were found in 46 (19.1%; 95% CI: 14.1–24.1) of the 241 captive animals analysed by commercial ELISA. A virus neutralization test confirmed specific antibodies against BTV‐1 and BTV‐4 in 25 (10.7%; 95% CI: 6.7–14.6) and five (3.0%; 95% CI: 0.3–4.0) animals, respectively. Two of the 24 longitudinally sampled individuals (one African elephant (Loxodanta africana) and one aoudad (Ammotragus lervia)) showed anti‐BTV antibodies at all samplings, whereas seroconversions were detected in one mouflon (Ovis aries musimon) in 2016, and one Asian elephant (Elephas maximus) in 2019. To the best of the authors' knowledge, this is the first large‐scale survey on BTV conducted in both artiodactyl and non‐artiodactyl zoo species worldwide. The results confirm BTV exposure in urban zoo parks in Spain, which could be of animal health and conservation concern. Circulation of BTV was detected in yearling animals in years when there were no reports of BTV outbreaks in livestock. Surveillance in artiodactyl and non‐artiodactyl zoo species could be a valuable tool for epidemiological monitoring of BTV. [ABSTRACT FROM AUTHOR]

We investigated the controversial origin of domestic sheep (Ovis aries) using large samples of contemporary and ancient domestic individuals and their closest wild relatives: the Asiatic mouflon (Ovis gmelini), the urial (Ovis vignei) and the argali (Ovis ammon). A phylogeny based on mitochondrial DNA, including 213 new cytochrome‐b sequences of wild Ovism confirmed that O. gmelini is the maternal ancestor of sheep and precluded mtDNA contributions from O. vignei (and O. gmelini × O. vignei hybrids) to domestic lineages. We also produced 54 new control region sequences showing shared haplogroups (A, B, C and E) between domestic sheep and wild O. gmelini which localized the domestication center in eastern Anatolia and central Zagros, excluding regions further east where exclusively wild haplogroups were found. This overlaps with the geographic distribution of O. gmelini gmelini, further suggesting that the maternal origin of domestic sheep derives from this subspecies. Additionally, we produced 57 new CR sequences of Neolithic sheep remains from a large area covering Anatolia to Europe, showing the early presence of at least three mitochondrial haplogroups (A, B and D) in Western colonization routes. This confirmed that sheep domestication was a large‐scale process that captured diverse maternal lineages (haplogroups). [ABSTRACT FROM AUTHOR]

The conflict between free-ranging livestock and wildlife is a serious conservation concern across rural communities worldwide. Livestock may affect wild herbivores via direct competition for resources due to spatial and diet overlap or via behavioural interference. It is imperative that we disentangle the effects of livestock on wildlife behaviour to obtain an empirical basis able to stir management and conservation decisions. Here, we studied the effect of livestock presence on the habitat selection in a free-ranging European mouflon (Ovis aries musimon) population in Sardinia, where the species is under strict protection. We collected spatial data on mouflon and livestock during two consecutive years to investigate whether the mouflon selection of key feeding grassland sites was negatively impacted by the livestock presence. We found that mouflon preferably selected grassland, and its selection significantly increased when grass was of better quality (greener). We showed that livestock presence led to the displacement of mouflon from such preferred feeding sites, an effect clearly exacerbated by livestock proximity. We indeed found that the selection of grassland by mouflon dropped significantly when the distance between livestock and mouflon was below ~ 650 m, providing a useful management threshold indication. Livestock presence in close proximity displaced mouflon to sub-optimal habitat, and its effects may have negative impact on the population dynamic of this species which is already characterized by low female productivity within harsh Mediterranean environment. Our results give clear management indications aimed at better managing livestock grazing within natural areas to ultimately improve wildlife conservation. [ABSTRACT FROM AUTHOR]

The results of previous studies of SRLV infections in wild ruminants suggest that wild ruminants may serve as virus reservoirs responsible for the infections of domestic small ruminants. It is possible that SRLVs circulate in free-ranging mouflons in Slovenia, but considering the results of previous studies in which SRLV infections were detected in mouflons, it is very likely that the detected seropositive animal is an accidental spillover host for SRLV. Keywords: small ruminant lentiviruses; SRLV; maedi-visna; caprine arthritis-encephalitis; chamois; mouflon; serology; ELISA; survey EN small ruminant lentiviruses SRLV maedi-visna caprine arthritis-encephalitis chamois mouflon serology ELISA survey N.PAG N.PAG 6 04/26/22 20220415 NES 220415 1. [Extracted from the article]

Background: Locomotion is often a necessity for animal survival and can account for a large proportion of an individual's energy budget. Therefore, determining the energy costs of locomotion is an important part of understanding the interaction between an animal and its environment. Measures of animal acceleration, specifically 'dynamic body acceleration' (DBA) has proved to be a useful proxy of the energy cost of locomotion. However, few studies have considered the effects of interacting factors such as the animal's speed or changes to the terrain slope on the putative acceleration versus energy expenditure relationship and how this may affect the relationship between DBA and energy expenditure. Methods: Here we conducted a methodological study to evaluate the ability of the metric 'vectorial dynamic body acceleration', VeDBA, obtained from tri-axial accelerometer data loggers, to act as a proxy for energy expenditure in non-uniform environments. We used indirect calorimetry to measure the oxygen consumption (V̇O2) of domestic sheep (Ovis aries) that were exposed to different ambient temperatures when immobile (resting) and that walked at various speeds (0.8 to 2.9 km h−1) and slope angles (− 6° to 6°) on a treadmill while simultaneously measuring tri-axial acceleration recorded at 40 Hz by body-mounted tags. Results: The lower critical temperature of sheep was identified as 18 °C, and V̇O2 when they were immobile was 3.67 mL O2 kg−1 min−1. There were positive relationships between V̇O2, VeDBA, and speed of walking. However, VeDBA correlated less well with V̇O2 when the terrain slope either inclined or declined. Conclusions: We advocate caution when using DBA metrics for establishing energy use in animals moving over uneven terrain and suggest that each study species or location must be examined on a case-by-case basis. Reliance upon the relationship described between acceleration and energy expenditure on horizontal-surface treadmills can lead to potential under- or over-estimates of energy expenditure when animals walk on uneven or inclined ground. [ABSTRACT FROM AUTHOR]

Due to their limited environment, farm animals are at greater risk of parasitic infection than free-living animals, which also have greater natural resistance to parasitic diseases. The aim of the present study was to determine the influence of season and meteorological conditions (temperature and humidity) on the species composition and dynamics of parasitic infections in farmed mouflons. The study was conducted in a herd of mouflon (n = 40) in an extensive system: the animals remained on pasture all year round. The herd was dewormed twice per year with albendazole. Fecal samples were collected at monthly intervals over three years and tested. The prevalence of infection was defined based on coproscopic methods. For most of the studied protozoans (except for E. parva), a greater prevalence was recorded in spring and summer (i.w. from May to September). Regarding nematodes, Capillaria spp., Nematodirus sp., and the Trichostrongylidae demonstrated a much greater prevalence in winter (i.e., in January and December). Temperature and precipitation were found to be positively correlated with intensity of infection by protozoans. However, maximum air temperature was negatively correlated with infection intensity by some nematodes. The deworming practice used in the herd (selection of substance, date, and method of dosing) did not effectively protect the mouflons against parasitoses. Changes in the microclimate resulted in high extent and intensity of mouflon infection with gastrointestinal parasites. Understanding the dynamics of parasitic infections in mouflons during the year allows the development of an appropriate preventive programme. [ABSTRACT FROM AUTHOR]

Farm profitability is heavily influenced by reproductive capacity. Fertility, prolificacy, and fecundity are all indicators of reproductive efficiency. In sheep with high economic value, prolificacy is a key reproduction parameter (Notter, 2008). Because most sheep breeds are monotocous, similar to Mouflon wild sheep (Garel et al., 2005), improving fecundity is a serious concern (Tang et al., 2019). This review aims to study genes and the genetic means of improving sheep reproduction parameters. Numerous mutations in the transforming growth factor (TGF) superfamily have been reported to influence sheep reproductive parameters. As a result, molecular genetics and marker-assisted selection (MAS) are essential in improving reproduction efficiency. If these mutations are not present in the population, introgression of the beneficial mutations to indigenous breeds is possible. Because within-breed selection has been considered relatively inefficient, due to the low heritability of the trait, crossbreeding of native breeds with prolific breeds has been the major means of genetically improving prolificacy. Studying fecundity genes is important in order to increase production efficiency and stabilizing optimal litter sizes. Different studies based on whole-genome sequencing (WGS), which are called genome-wide association studies (GWAS), and also proteomic studies, transcriptome analysis, and mitochondrial DNA analysis have revealed further genetic variation with medium or minor effects on reproduction. [ABSTRACT FROM AUTHOR]

Background: Anaplasma, Babesia and Theileria are tick-borne pathogens (TBPs) that affect livestock worldwide. However, information on these pathogens in yaks (Bos grunniens) and Tibetan sheep (Ovis aries) on the Qinghai-Tibet Plateau (QTP), China, is limited. In this study, Anaplasma spp., Babesia spp. and Theileria spp. infections were assessed in yaks and Tibetan sheep from Qinghai Province. Methods: A total of 734 blood samples were collected from 425 yaks and 309 Tibetan sheep at nine sampling sites. Standard or nested polymerase chain reaction was employed to screen all the blood samples using species- or genus-specific primers. Results: The results showed that 14.1% (60/425) of yaks and 79.9% (247/309) of Tibetan sheep were infected with at least one pathogen. Anaplasma ovis, Anaplasma bovis, Anaplasma capra, Anaplasma phagocytophilum, Babesia bovis and Theileria spp. were detected in this study, with total infection rates for all the assessed animals of 22.1% (162/734), 16.3% (120/734), 23.6% (173/734), 8.2% (60/734), 2.7% (20/734) and 19.3% (142/734), respectively. For yaks, the infection rate of A. bovis was 6.4% (27/425), that of B. bovis was 4.7% (20/425) and that of Theileria spp. was 3.3% (14/425). Moreover, 52.4% (162/309) of the Tibetan sheep samples were infected with A. ovis, 30.1% (93/309) with A. bovis, 56.0% (173/309) with A. capra, 19.4% (60/309) with A. phagocytophilum and 41.4% (128/309) with Theileria spp. Conclusions: This study revealed the prevalence of Anaplasma spp., Babesia spp. and Theileria spp. in yaks and Tibetan sheep in Qinghai Province, China, and provides new data for a better understanding of the epidemiology of TBPs in these animals in this area of the QTP, China. [ABSTRACT FROM AUTHOR]

The prevalence of the Pest des petits ruminants (PPR) over the past ten years in Iran has resulted in devastating effects on the wild goat (Capra aegagrus) and mouflon (Ovis gmelini) populations, as well as small domestic ruminants. The aim of this study was to identify areas with high risk of PPR outbreak, determine the environmental and landscape factors affecting the spread of the disease, and identify the transmission corridors of the disease through the wild hosts of PPR virus in Markazi province. The risk of occurrence of PPR was mapped once in livestock and wildlife separately and also jointly for both groups using maximum entropy model. An electrical circuit model was used to identify migration corridors and evaluate the transmission of disease through the wild hosts of the PPR virus. The model performance index was calculated 0.727 for livestock, 0.997 for wild ruminants, and 0.849 for both groups. The results showed that precipitation of the wettest month was the most important variable affecting the prevalence of PPR. Potential migration corridors of wild sheep matched the areas where the risk of PPR occurrence was high. The results of the present study can be operative in developing effective methods to prevent the spread of this fatal disease in the country's wildlife. [ABSTRACT FROM AUTHOR]

Toxoplasmosis is a parasitic zoonosis caused by Toxoplasma gondii which infects warm‐blooded species worldwide. Humans can be infected through ingestion of tissue cysts from raw or undercooked meat, including game meat. A nationwide large‐scale cross‐sectional study was conducted to assess exposure to T. gondii in seven wild ruminant species in Spain. A total of 2,040 serum samples from 77 sampling sites randomly distributed in the five bioregions (BRs) covering mainland Spain were tested for antibodies against T. gondii using the modified agglutination test. The overall seroprevalence was 22.0% (449/2,040). Seroprevalence by species in decreasing order was as follows: 39.6% (141/356) in roe deer (Capreolus capreolus), 37.1% (138/372) in fallow deer (Dama dama), 16.6% (92/553) in red deer (Cervus elaphus), 14.0% (26/186) in Southern chamois (Rupicapra pyrenaica), 11.5% (24/209) in mouflon (Ovis aries musimon), 7.8% (27/346) in Iberian wild goat (Capra pyrenaica) and 5.6% (1/18) in Barbary sheep (Ammotragus lervia). Seropositivity was detected in 74.0% (57/77) of the sampling sites. Results indicate widespread but not homogeneous exposure to T. gondii in wild ruminant populations in Spain during the last two decades and highlight differences related to animal species and spatial distribution of these species in this country; this implies potential consequences of T. gondii for animal health, conservation and public health. [ABSTRACT FROM AUTHOR]

The domestication and subsequent development of sheep are crucial events in the history of human civilization and the agricultural revolution. However, the impact of interspecific introgression on the genomic regions under domestication and subsequent selection remains unclear. Here, we analyze the whole genomes of domestic sheep and their wild relative species. We found introgression from wild sheep such as the snow sheep and its American relatives (bighorn and thinhorn sheep) into urial, Asiatic and European mouflons. We observed independent events of adaptive introgression from wild sheep into the Asiatic and European mouflons, as well as shared introgressed regions from both snow sheep and argali into Asiatic mouflon before or during the domestication process. We revealed European mouflons might arise through hybridization events between a now extinct sheep in Europe and feral domesticated sheep around 6000–5000 years BP. We also unveiled later introgressions from wild sheep to their sympatric domestic sheep after domestication. Several of the introgression events contain loci with candidate domestication genes (e.g., PAPPA2, NR6A1, SH3GL3, RFX3 and CAMK4), associated with morphological, immune, reproduction or production traits (wool/meat/milk). We also detected introgression events that introduced genes related to nervous response (NEURL1), neurogenesis (PRUNE2), hearing ability (USH2A), and placental viability (PAG11 and PAG3) into domestic sheep and their ancestral wild species from other wild species. Chen, Xu, et al. performed a population genetics analysis of the eight species in the Ovis genus to assess the evolutionary and demographic history of these wild species and its domesticated counterpart. The authors identified a number of introgression events at different time periods, likely associated with the domestication process as well as identify a number of possible genomic targets of domestication. [ABSTRACT FROM AUTHOR]

Archaeological and genetic evidence show that sheep were originally domesticated in area around the North of Zagros mountains, North-west of Iran. The Persian plateau exhibits a variety of native sheep breeds with a common characteristic of coarse-wool production. Therefore, knowledge about the genetic structure and diversity of Iranian sheep and genetic connections with other sheep breeds is of great interest. To this end, we genotyped 154 samples from 11 sheep breeds distributed across Iran with the Ovine Infinium HD SNP 600 K BeadChip array, and analyzed this dataset combined with the retrieved data of 558 samples from 19 worldwide coarse-wool sheep breeds. The average genetic diversity ranged from 0.315 to 0.354, while the F ST values ranged from 0.016 to 0.177 indicating a low differentiation of Iranian sheep. Analysis of molecular variance showed that 90.21 and 9.79% of the source of variation were related to differences within and between populations, respectively. Our results indicated that the coarse-wool sheep from Europe were clearly different from those of the Asia. Accordingly, the Asiatic mouflon was positioned between Asian and European countries. In addition, we found that the genetic background of Iranian sheep is present in sheep from China and Kyrgyzstan, as well as India. The revealed admixture patterns of the Iranian sheep and other coarse-wool sheep breeds probably resulted from the expansion of nomads and through the Silk Road trade network. • Low genetic differentiation was detected for the Iranian sheep populations. • There is a high genetic diversity within Iranian native sheep breeds. • The effective population size is declining in Iranian native breeds. • There is a common ancestry between the Iranian and Asian coarse-wool sheep. • There are admixture patterns for the Iranian sheep and other coarse-wool sheep breeds. [ABSTRACT FROM AUTHOR]

Objective: To describe briefly the physiology, the anatomy and the reproductive management of the ram. Design/methodology/approach: Review of the anatomy, physiology and general considerations for an adequate reproductive management of the ram. Results: The ram presents a less seasonal reproductive activity than the female and its reproductive behavior is easier to observe. However, it is in the fall, the reproductive season of seasonal sheep, when their behavior is much more complex and complete. It begins with smelling the external genitals of the female, goes through the flehmen response and ends with mating, intromission and ejaculation. It is necessary to consider the anatomical and physiological aspects of the ram and its meticulous management to avoid reproductive failures in the flock. Frequently, the rams are less important for the flock's handler during the season of reproductive rest. Monitoring their diet and parasite and disease control is necessary to keep them apt for reproduction. The evaluation of the reproductive aptitude of the ram before mating is convenient and can be planned as part of its management; and once mating begins, considering the adequate proportion of rams/females, in addition to monitoring their performance during this event. Study Limitations/Implications: To consider that the ram shows a good capacity for mating, capacity for service, libido, quality of semen, since it is responsible for a proportion of lamb production. Findings/conclusions: Reproduction in sheep is regulated by the photoperiod, genetic potential, nutritional status, health status and other factors, which are important both in the ram and in the female. Some sheep breeds have potential of prolificacy; a good reproductive management of the ram can influence these factors and increase the reproduction rate in the flocks. [ABSTRACT FROM AUTHOR]

During domestication processes, changes in selective pressures induce multiple phenotypical, physiological, and behavioral changes in target species. The rise of next-generation sequencing has provided a chance to study the genetics bases of these changes, most of the time based on single nucleotide polymorphisms (SNPs). However, several studies have highlighted the impact of structural variations (SVs) on individual fitness, particularly in domestic species. We aimed at unraveling the role of SVs during the domestication and later improvement of small ruminants by analyzing whole-genome sequences of 40 domestic sheep and 11 of their close wild relatives (Ovis orientalis), and 40 goats and 18 of their close wild relatives (Capra aegagrus). Using a combination of detection tools, we called 45,796 SVs in Ovis and 15,047 SVs in Capra genomes, including insertions, deletions, inversions, copy number variations, and chromosomal translocations. Most of these SVs were previously unreported in small ruminants. 69 and 45 SVs in sheep and goats, respectively, were in genomic regions with neighboring SNPs highly differentiated between wilds and domestics (i.e. putatively related to domestication). Among them, 25 and 20 SVs were close to or overlapping with genes related to physiological and morpho-anatomical traits linked with productivity (e.g. size, meat or milk quality, wool color), reproduction, or immunity. Finally, several of the SVs differentiated between wilds and domestics would not have been detected by screening only the differentiation of SNPs surrounding them, highlighting the complementarity of SVs and SNPs based approaches to detect signatures of selection. [ABSTRACT FROM AUTHOR]

Fasciola hepatica is a liver parasite of ruminants whose distribution is determined by its intermediate host, the freshwater snail Galba truncatula. In Europe, F. hepatica is mostly associated with lowlands. Infection from sympatric domestic reservoirs is rarely reported in wild mountain ungulates. This study explores F. hepatica in a multi‐host system in a European alpine area. Serum samples (n = 1,209) from Pyrenean chamois (Rupicapra p. pyrenaica), European mouflon (Ovis aries musimon), domestic sheep (Ovis aries) and domestic cattle (Bos taurus) were collected in the National Game Reserve of Freser‐Setcases (NGRFS) in Catalonia, Northeastern Spain, from 2008 to 2019, and tested for antibodies against F. hepatica. During the same period, the livers of 214 chamois hunted in the NGRFS were inspected for F. hepatica and associated pathological changes. Finally, 907 freshwater snails were collected in summer 2016 between 1559 and 2,224 metres above sea level (asl) in the NGRFS, and F. hepatica DNA sought by PCR. Antibodies against F. hepatica were detected in all four species, with a higher prevalence in cattle and sheep than in chamois. Fasciola hepatica and hepatic lesions were concurrently observed in 13/214 of the chamois livers inspected (6.1%, CI95 2.9%–9.3%). Fasciola hepatica DNA was detected in one out of the 907 snails (0.1%, Cl95 0.1% – 0.3%; Ct value 33.3) and collected at 2054 m asl. Fasciola hepatica was consistently detected in a high mountain multi‐host system, suggesting that its life cycle is completed and that it occurs endemically at the highest elevation reported in Europe. Transhumant livestock are the likely source in this alpine ecosystem, which according to rare occurrence of F. hepatica DNA in G. truncatula is still a suboptimal habitat for F. hepatica life cycle. Studying parasites at their highest distribution range can be useful to monitor climate change in seasonal mountain environments. [ABSTRACT FROM AUTHOR]

A large‐scale study was carried out to determine the prevalence of antibodies against Pestivirus species in wild ruminants and describe their spatial variation in mainland Spain. Serum samples of 1,874 wild ruminants from different regions of this country were collected between the years 2000 and 2017. A total of 6.6% (123/1,874) animals showed antibodies against Pestivirus by both blocking ELISA (bELISA) and virus neutralization tests (VNT). The prevalence of antibodies against pestiviruses was different both among species and regions. Seroprevalence by species was 30.0% (75/250) in Southern chamois (Rupicapra pyrenaica), 7.0% (25/357) in fallow deer (Dama dama), 2.5% (10/401) in red deer (Cervus elaphus), 2.4% (8/330) in Iberian wild goat (Capra pyrenaica), 1.1% (4/369) in roe deer (Capreolus capreolus) and 0.8% (1/130) in mouflon (Ovis aries musimon), not detecting seropositivity (0/37) in Barbary sheep (Ammotragus lervia). The results confirm that exposure to pestiviruses was detected throughout mainland Spain, with significantly higher seroprevalence in Northern regions associated with the presence of Southern chamois. This indicates an endemic circulation of pestiviruses in Southern chamois and a limited circulation of these viruses in the remaining wild ruminant species during the last two decades, thus suggesting that non‐chamois species are not true Pestivirus reservoirs in Spain. Nonetheless, the high spatial spread of these viruses points out that new epidemic outbreaks in naïve wild ruminant populations or transmission to livestock may occur, evidencing the usefulness of monitoring pestiviruses in wild ruminants, especially at the wildlife–livestock interface. [ABSTRACT FROM AUTHOR]

The possibility of Toxoplasma gondii transmitted from game meat to humans is of public health concern. Here we determined seroprevalence and risk factors associated with T. gondii in large game ungulates that cohabit in Sierras de Cazorla, Segura and Las Villas Natural Park (SCSV‐NP) (Southern Spain), a natural park with high human–animal interaction. Antibodies against T. gondii in 328 wild ungulates were assayed by the modified agglutination test (MAT ≥ 1:25). Antibodies were found in 39 (11.9%, 95% CI: 8.4–15.4) wild ungulates, with seroprevalence levels of 20.8% in wild boars (Sus scrofa) (5/24), 19.0% in fallow deer (Dama dama) (12/63), 13.9% in Iberian ibex (Capra pyrenaica hispanica) (14/101), 7.9% in red deer (Cervus elaphus) (6/76), and 3.1% in mouflons (Ovis aries musimon) (2/64). Significantly higher seroprevalence was observed in fallow deer and wild boars compared to mouflons. Animals living close to urban areas (<2 km) had 4.6‐times higher risk compared to those living at >5 km of urban areas. The results indicate high circulation of T. gondii in wild ungulates in SCSV‐NP, which is of animal and public health concern. The increased seroprevalence of T. gondii detected in wildlife ungulates living close to urban areas may increase human infection in those areas if meat from infected animals is consumed raw or undercooked. [ABSTRACT FROM AUTHOR]

Schmallenberg disease (SBD) is an emerging vector‐borne disease that affects domestic and wild ruminants. A long‐term serosurvey was conducted to assess exposure to Schmallenberg virus (SBV) in all the wild ruminant species present in mainland Spain. Between 2010 and 2016, sera from 1,216 animals were tested for antibodies against SBV using a commercial blocking ELISA. The overall prevalence of antibodies was 27.1% (95%CI: 24.7–29.7). Statistically significant differences among species were observed, with significantly higher seropositivity found in fallow deer (Dama dama) (45.6%; 99/217), red deer (Cervus elaphus) (31.6%; 97/307) and mouflon (Ovis aries musimon) (28.0%; 33/118) compared to Barbary sheep (Ammotragus lervia) (22.2%; 8/36), Iberian wild goat (Capra pyrenaica) (19.9%; 49/246), roe deer (Capreolus capreolus) (17.5%; 34/194) and Southern chamois (Rupicapra pyrenaica) (10.2%; 10/98). Seropositive animals were detected in 81.4% (57/70; 95%CI: 70.8–88.8) of the sampled populations. SBV seroprevalence ranged from 18.8% (48/256) in bioregion (BR)2 (north‐central, Mediterranean) to 32.3% (31/96) in BR1 (northeastern or Atlantic, Eurosiberian). Anti‐SBV antibodies were not found before 2012, when the first outbreak of SBD was reported in Spain. In contrast, seropositivity was detected uninterruptedly during the period 2012–2016 and anti‐SBV antibodies were found in yearling animals in each of these years. Our results provide evidence of widespread endemic circulation of SBV among wild ruminant populations in mainland Spain in recent years. Surveillance in these species could be a useful tool for monitoring SBV in Europe, particularly in areas where wild ruminants share habitats with livestock. [ABSTRACT FROM AUTHOR]

In a survey study on the macroscopic species of Sarcocystis infecting domestic sheep (Ovis aries) and cattle (Bos taurus) in Egypt, the macrosarcocysts of Sarcocystis gigantea and Sarcocystis medusiformis were detected in the carcasses of 33 domestic sheep out of a total of 250 (13.20%), whereas Sarcocystis hirsuta macrosarcocysts were found in 17 out of 150 cattle (11.33%) slaughtered at the municipal abattoirs of two different provinces in Egypt. The sarcocysts of each species were thoroughly described morphologically through gross inspection, histopathologic and transmission electron microscopic (TEM) examination. By TEM, S. gigantea primary cyst wall was 6–7.5 μm thick and had irregular highly branched cauliflower-like villar protrusions (VP).The VP contained microtubules (mt) and multiple electron dense granules (edg) that were dispersed inside the cores of the branched VP. Besides, the parasitophorous vacuolar membrane (PVM) had minute blister-like invaginations all over the entire surface of the sarcocyst. S. medusiformis cyst had a thin sarcocyst wall (~2 μm thick) as compared to that of S. gigantea. The cyst wall had trapezoidal or nearly pyramidal VP that were surrounded by thick PVM in addition to a ground substance GS that contained electron-dense fine particles. S. hirsuta sarcocyst wall was 7–9 μm thick and possessed rhomboid-shaped VP that contained microtubules (mt) and electron-dense granules (edg) of variable sizes. The edg were arranged in rows and running parallel to the longitudinal axis of the protrusions. The VP had characteristic narrow neck-like constrictions at their bases, dilated middle portions, and tapered distal ends. The detected macrosarcocysts were eventually confirmed by molecular characterization on the levels of 18S rRNA, 28S rRNA, and Cox1 sequences. Phylogenetic analyses based on the sequences of the 18S rRNA and Cox1 genetic markers gave rise to robust associations of the currently identified isolates of S. gigantea, S. medusiformis, and S. hirsuta within a major clade of Sarcocystis species with felines as presumed or known definitive hosts. [ABSTRACT FROM AUTHOR]

The epidemiology behind multi-host/multi-parasite systems is particularly interesting to investigate for a better understanding of the complex dynamics naturally occurring in wildlife populations. We aimed to approach the naturally occurring polyparasitism of gastrointestinal nematodes in a sympatric wild ruminant scenario present in south-east Spain. To this end, the gastrointestinal tract of 252 wild ruminants of four different species (red deer, Cervus elaphus; mouflon, Ovis aries musimon; Iberian ibex, Capra pyrenaica and fallow deer, Dama dama) were studied in Cazorla, Segura y Las Villas Natural Park (Andalusia, Spain). Of the analysed animals, 81.52% were positive for parasite infection and a total of 29 nematode species were identified. Out of these, 25 species were detected in at least two host species and 11 parasitized all ruminant species surveyed. The multi-host interaction between these nematodes and the four host species is discussed under the perspective of host family-based differences. [ABSTRACT FROM AUTHOR]

Mouflon (Ovis orientalis) with its huge and beautiful horns is considered as one of the ancestors of domesticated sheep. The European mouflon (Ovis orientalis musimon) is in the Asiatic mouflon (O. orientalis) clade. In order to provide novel genome information for mouflon, moreover promote genetic analysis of genus Ovis both domestic and wild, we propose to sequence the mouflon genome. We assembled the highly heterozygous mouflon genome based on Illumina HiSeq platform using the next-generation sequencing technology. Finally, the draft genome we accessed approximately 2.69 Gb (42.15% GC), while N50 sizes of contig and scaffold are 110.1 kb and 10.4 Mb, respectively. The contiguity of this assembly is obviously better than earlier versions. Further analyses predicted 20,814 protein-coding genes in the mouflon genome and 12,390 shared gene families among bovine species. It is estimated that the divergence time between O. orientalis musimon and Ovis aries was 7.6 million years ago. The draft mouflon genome assembly will provide data support and theoretical basis for various investigations of the genus Ovis species in future. [ABSTRACT FROM AUTHOR]

Summary: The heterogeneity of climate and different agro‐ecological conditions in Iran have resulted in development of 27 indigenous sheep breeds. Wild Asiatic mouflon (Ovis orientalis) is believed to be the ancestor of Iranian sheep. Evaluation of genetic diversity and population structure within and among domestic breeds has important implications for animal breeding programs and genetic resources management. Based on 50K SNP genotype data, we studied the genetic diversity of five indigenous Iranian sheep breeds: Afshari (n = 37), Moghani (n = 34), Qezel (n = 35), Zel (n = 46) and Lori‐Bakhtiari (n = 46), and Asiatic mouflon (n = 8) sampled from Iran. Furthermore, genetic diversity and the breed admixture of Iranian sheep were assessed on a larger geographic scale using a reference panel comprising: three indigenous Afghan breeds – Arabi (n = 15), Balouchi (n = 15) and Gadik (n = 15); three indigenous breeds from Turkey and Cyprus – Cyprus Fat Tail (n = 30), Karakas (n = 18) and Norduz (n = 20); and three commercial European breeds – Suffolk (n = 19), Comisana (n = 24) and Engadine Red Sheep (n = 24). The results revealed that the investigated breeds are divided into five genetically distinct clusters according to their geographic origin. Afshari was closest to the local mouflon population and showed signs of mouflon admixture. Qezel was identified as a hybrid sheep breed. Much evidence supported the Afghan breeds being identical. Inbreeding values, which were estimated based on ROHs, were highest for Suffolk (FROH = 0.0544) and lowest for Balouchi (FROH = 0.0078). In conclusion, analysis of selected breeds from neighboring countries along with Asiatic mouflon gave a deeper insight into the evolutionary history and origin of Iranian sheep with important implications for future breed management. [ABSTRACT FROM AUTHOR]

The article explores the biochemical pedomorphosis and genetic assimilation in the hypoxia adaptation of Tibetan antelope. It mentions the finding of the genomic mechanism underlying this regulatory isoHb switch, revealing how a reversible acclimatization response became genetically assimilated as an irreversible adaptation to chronic hypoxia.

Summary: We aimed to determine whether casein variants that are currently segregating in ovine populations existed before the domestication of sheep or, to the contrary, if their emergence is much more recent. To this end, we have retrieved whole‐genome sequences from Iranian and domestic sheep from Africa, Europe, South and East Asia and West Asia. Population structure analysis based on 55,352,935 SNPs revealed a clear separation between Iranian mouflons and domestic sheep. Moreover, we also observed a strong genetic differentiation between Iranian mouflons sampled in geographic areas close to Tehran and Tabriz. Based on sequence data, hundreds of SNPs mapping to the casein αS1 (CSN1S1, 248 SNPs), casein αS2 (CSN1S2, 268 SNPs), casein ß (CSN2, 146 SNPs) and casein κ (CSN3, 112 SNPs) genes were identified. Approximately 25–63.02% of the casein variation was shared between Iranian mouflons and domestic sheep, and the four domestic sheep populations also shared 44.2–57.4% of the casein polymorphic sites. These findings suggest that an important fraction of the casein variation present in domestic sheep was already segregating in the mouflon prior to its domestication. Genomic studies performed in horses and dogs are consistent with this view, suggesting that much of the diversity that we currently detect in domestic animals comes from standing variation already segregating in their wild ancestors. [ABSTRACT FROM AUTHOR]

Background: In the Neolithic, domestic sheep migrated into Europe and subsequently spread in westerly and northwesterly directions. Reconstruction of these migrations and subsequent genetic events requires a more detailed characterization of the current phylogeographic differentiation. Results: We collected 50 K single nucleotide polymorphism (SNP) profiles of Balkan sheep that are currently found near the major Neolithic point of entry into Europe, and combined these data with published genotypes from southwest-Asian, Mediterranean, central-European and north-European sheep and from Asian and European mouflons. We detected clines, ancestral components and admixture by using variants of common analysis tools: geography-informative supervised principal component analysis (PCA), breed-specific admixture analysis, across-breed f 4 profiles and phylogenetic analysis of regional pools of breeds. The regional Balkan sheep populations exhibit considerable genetic overlap, but are clearly distinct from the breeds in surrounding regions. The Asian mouflon did not influence the differentiation of the European domestic sheep and is only distantly related to present-day sheep, including those from Iran where the mouflons were sampled. We demonstrate the occurrence, from southeast to northwest Europe, of a continuously increasing ancestral component of up to 20% contributed by the European mouflon, which is assumed to descend from the original Neolithic domesticates. The overall patterns indicate that the Balkan region and Italy served as post-domestication migration hubs, from which wool sheep reached Spain and north Italy with subsequent migrations northwards. The documented dispersal of Tarentine wool sheep during the Roman period may have been part of this process. Our results also reproduce the documented 18th century admixture of Spanish Merino sheep into several central-European breeds. Conclusions: Our results contribute to a better understanding of the events that have created the present diversity pattern, which is relevant for the management of the genetic resources represented by the European sheep population. [ABSTRACT FROM AUTHOR]

Deer keds (Lipoptena spp.) are blood‐sucking ectoparasites of domestic and wild animals, and also accidentally of humans. In Europe, five Lipoptena spp. have been recorded, although the lack of specific taxonomic keys has often led to mistaken identification or to missing data. The present study aimed to develop an identification key of the European species and also to identify Lipoptena spp. found on wild ungulates in northern Italy. In total, 390 hippoboscids were collected from Rupicapra rupicapra, Capreolus capreolus, Cervus elaphus and Ovis aries musimon in an Alpine area of Italy. After morphological identification, 140 specimens were subjected to phylogenetic analysis based on mitochondrial (CO1) and nuclear (CAD) gene sequences. Despite the expected presence of slight morphological variations, all specimens examined were identified both microscopically and molecularly as Lipoptena cervi (100% identity for both CO1 and CAD genes). The massive increase in wild ungulate populations can favour the possibility of detecting other species of Lipoptena. The identification keys proposed in the present study may help with monitoring the presence of Lipoptena species, particularly in European countries where this ectoparasite is neglected and for which various data (from diffusion to control methods) are still missing. [ABSTRACT FROM AUTHOR]

The expression of sexually selected traits in highly dimorphic ungulates may be influenced by environmental quality. Variations in habitat conditions can impose different constraints on the allocation of energy resources to male life‐history traits, and possibly alter the female preferences for specific features. Here, we compared the horn growth patterns in male European mouflon Ovis aries musimon living in different habitats (Mediterranean vs. continental) but sharing a common genetic origin. We hypothesized that the expression of sexually selected traits such as horn development should be promoted in more favorable habitat conditions (i.e., Mediterranean). Using linear mixed models on data retrieved from individuals harvested under the same hunting regime, we found longer horns and greater individual variance in horn segment length in the Mediterranean population than in the continental one. Furthermore, Mediterranean rams showed no evidence of compensatory horn growth, as opposed to the continental rams. Unexpectedly, horn base circumference was greater in the continental habitat than in the Mediterranean one. The overall results suggest different patterns of investment in horns in the two populations, with seemingly stronger pressure and consequences of sexual selection on mouflon rams living in more favorable environments. Although the role of hunters' selectivity cannot be excluded a priori, our data suggest that the differences in the expression of sexually selected traits in our study populations may be influenced by environmental conditions. Because sexual selection can impose substantial fitness costs on individuals, further investigations on the trade‐offs between reproduction and survival would improve our understanding of the dynamics of mouflon populations living in different environmental conditions. [ABSTRACT FROM AUTHOR]