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The ecologically significant shift in developmental strategy from planktotrophic (feeding) to lecithotrophic (nonfeeding) development in the sea urchin genus Heliocidaris is one of the most comprehensively studied life history transitions in any animal. Although the evolution of lecithotrophy involved substantial changes to larval development and morphology, it is not known to what extent changes in gene expression underlie the developmental differences between species, nor do we understand how these changes evolved within the context of the well-defined gene regulatory network (GRN) underlying sea urchin development. To address these questions, we used RNA-seq to measure expression dynamics across development in three species: the lecithotroph Heliocidaris erythrogramma, the closely related planktotroph H. tuberculata, and an outgroup planktotroph Lytechinus variegatus. Using well-established statistical methods, we developed a novel framework for identifying, quantifying, and polarizing evolutionary changes in gene expression profiles across the transcriptome and within the GRN. We found that major changes in gene expression profiles were more numerous during the evolution of lecithotrophy than during the persistence of planktotrophy, and that genes with derived expression profiles in the lecithotroph displayed specific characteristics as a group that are consistent with the dramatically altered developmental program in this species. Compared to the transcriptome, changes in gene expression profiles within the GRN were even more pronounced in the lecithotroph. We found evidence for conservation and likely divergence of particular GRN regulatory interactions in the lecithotroph, as well as significant changes in the expression of genes with known roles in larval skeletogenesis. We further use coexpression analysis to identify genes of unknown function that may contribute to both conserved and derived developmental traits between species. Collectively, our results indicate that distinct evolutionary processes operate on gene expression during periods of life history conservation and periods of life history divergence, and that this contrast is even more pronounced within the GRN than across the transcriptome as a whole. [ABSTRACT FROM AUTHOR]

Abstract: The classification of the Paris basin Bajocian–Oxfordian species of the genus Nucleolites is revised. A classic point of view, until now used by authors and mainly based on the general morphology of the test, is first developed. Then, this last is modified with new architectural data, which refer to the extraxial–axial theory concerning the structure of the apical system as well as the presence of supplementary and catenal plates. These architectural data are first used facing the general morphology of the test. Such approach leads to a new point of view for the classification of the species of the genus Nucleolites. The systematics is particularly significantly simplified. The deduced and proposed phylogenetic hypothesis shows that the genus Nucleolites is composed of two parallel lineages as soon as the beginning of the genus in the Bajocian: a group with a so-called “primitive” architecture, and a group with an “advanced” one. On and after the Late Callovian, the species with a primitive organisation give birth to advanced species, which continue in younger time. In this way, the genus Nucleolites may be paraphyletic since the Late Callovian onward. [Copyright &y& Elsevier]