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Introduction: The rhizosphere is the zone of soil surrounding plant roots that is directly influenced by root exudates released by the plant, which select soil microorganisms. The resulting rhizosphere microbiota plays a key role in plant health and development by enhancing its nutrition or immune response and protecting it from biotic or abiotic stresses. In particular, plant growth-promoting rhizobacteria (PGPR) are beneficial members of this microbiota that represent a great hope for agroecology, since they could be used as bioinoculants for sustainable crop production. Therefore, it is necessary to decipher the molecular dialog between roots and PGPR in order to promote the establishment of bioinoculants in the rhizosphere, which is required for their beneficial functions. Methods: Here, the ability of root exudates from rapeseed (Brassica napus), pea (Pisum sativum), and ryegrass (Lolium perenne) to attract and feed three PGPR (Bacillus subtilis, Pseudomonas fluorescens, and Azospirillum brasilense) was measured and compared, as these responses are directly involved in the establishment of the rhizosphere microbiota. Results: Our results showed that root exudates differentially attracted and fed the three PGPR. For all beneficial bacteria, rapeseed exudates were the most attractive and induced the fastest growth, while pea exudates allowed the highest biomass production. The performance of ryegrass exudates was generally lower, and variable responses were observed between bacteria. In addition, P. fluorescens and A. brasilense appeared to respond more efficiently to root exudates than B. subtilis. Finally, we proposed to evaluate the compatibility of each plant–PGPR couple by assigning them a “love match” score, which reflects the ability of root exudates to enhance bacterial rhizocompetence. Discussion: Taken together, our results provide new insights into the specific selection of PGPR by the plant through their root exudates and may help to select the most effective exudates to promote bioinoculant establishment in the rhizosphere. [ABSTRACT FROM AUTHOR]

Introduction: Root exudates act as the "language" of plant-soil communication, facilitating crucial interactions, information exchange, and energy transfer between plants and soil. The interactions facilitated by root exudates between plants and microorganisms in the rhizosphere are crucial for nutrient uptake and stress resilience in plants. However, the mechanism underlying the interaction between root exudates and rhizosphere microorganisms in desert plants under drought conditions remains unclear, especially among closely related species. Methods: To reveal the ecological strategies employed by the genus Haloxylon in different habitats. Using DNA extraction and sequencing and UPLC-Q-Tof/MS methods, we studied root exudates and soil microorganisms from two closely related species, Haloxylon ammodendron (HA) and Haloxylon persicum (HP), to assess differences in their root exudates, soil microbial composition, and interactions. Results: Significant differences were found in soil properties and root traits between the two species, among which soil water content (SWC) and soil organic carbon (SOC) in rhizosphere and bulk soils (P < 0.05). While the metabolite classification of root exudates was similar, their components varied, with terpenoids being the main differential metabolites. Soil microbial structure and diversity also exhibited significant differences, with distinct key species in the network and differential functional processes mainly related to nitrogen and carbon cycles. Strong correlations were observed between root exudatemediated root traits, soil microorganisms, and soil properties, although the complex interactions differed between the two closely relative species. The primary metabolites found in the network of HA include sugars and fatty acids, while HP relies on secondary metabolites, steroids and terpenoids. Discussion: These findings suggest that root exudates are key in shaping rhizosphere microbial communities, increasing microbial functionality, fostering symbiotic relationships with hosts, and bolstering the resilience of plants to environmental stress. [ABSTRACT FROM AUTHOR]

Investigating the quantity and spatiotemporal dynamics of metabolite release from plant roots is essential if we are to understand the ecological significance of root exudates in the rhizosphere; however, this is difficult to quantify. In the present study, we quantified in situ root exudation rates during three incubation periods (0-24, 24-48, and 48-72 h) and fine roots within four diameter ranges (<0.8, 0.8-1.0, 1.0-1.2, and 1.2-2.0 mm), and also measured nine morphological traits in the fine roots of Pinus massoniana. Higher root carbon (C) exudation rates were detected during the 0-24 h period. During the 0-24 h and 24-48 h periods, nitrogen (N) uptake rates were higher than N exudation rates, while during the 48-72 h period, N exudation rates exceeded uptake rates. As C exudation increased during 0-48h incubation period, the uptake of N tended to level out. We concluded that the 24-48 h incubation period was the most suitable for capturing root exudates from P. massoniana. The exudation of C from the roots was positively associated with root mass, length, surface area, volume, the number of root tips, and the root tissue density, when incubated for 0-24 h and 24-48 h. Furthermore, length-specific C exudation rates, along with N exudation and uptake rates, all increased as the diameter of the fine roots increased. The release of root exudates could be efficiently predicted by the fine root morphological traits, although the accuracy of prediction depended on the incubation period. Higher values for fine root morphological traits were generally indicative of higher nutrient requirements and tissue investment, as well as higher C exudation rates. [ABSTRACT FROM AUTHOR]

The functioning of living organisms in nature is possible only due to active interaction with microbiota. It is typical for phytobionts, the microbial cenosis of which is even more diverse. Plants contribute to the spread of microorganisms in the rhizosphere by releasing root exudates. The chemical composition of these exudates varies in different plant species and depends on the significant number of factors that affect their growth and development. The components of the plant root exudates stimulate expansion in the rhizosphere of microorganisms, useful for the plant growth. This microbiota improves the mineral life of plants considerably, stimulating their growth with biologically active compounds, increasing the availability of a number of microelements for them, protecting the growth of plants from phytopathogens and phytophages. It provides significant stimulation for the growth and development of phytobionts. It has been shown that microbial groups in the rhizosphere can induce some changes in the composition of plant root exudates. [ABSTRACT FROM AUTHOR]

The ecological restoration of submerged plants is one of the most widely used technologies in the remediation of eutrophic water bodies. This technology mainly removes nitrogen, phosphorus, and other nutrients in water through the absorption effects of plant roots, stems, and leaves and the biotransformation of microorganisms attached to their surfaces. Root exudates can directly affect root-attached microorganisms and other aquatic organisms, thus significantly influencing water remediation by submerged plants. At present, there are few reviews on the root exudates of submerged plants and their effects on aquatic organisms. In this study, the composition, collection, and methods of detecting the root exudates of submerged plants are reviewed. Factors affecting the release of root exudates from submerged plants are analyzed, including abiotic (light, temperature, and nutritional status) and biotic factors (rhizosphere microorganisms). The positive or negative effects of root exudates on phytoplankton, zooplankton, and microorganisms are also discussed. The results show that plant species, growth stages, and environmental factors (light, temperature, and nutritional status) are crucial factors affecting root exudates. In addition, submerged plants can significantly influence phytoplankton, zooplankton, and microorganisms by releasing allelochemicals or other root exudates. Based on the results of this study, the influencing mechanisms of root exudates on ecological restoration processes by submerged plants are clarified. This review provides important guiding significance for applying submerged macrophytes in water restoration. [ABSTRACT FROM AUTHOR]

Introduction: Maize/soybean intercropping is a common cropping practice in Chinese agriculture, known to boost crop yield and enhance soil fertility. However, the role of below-ground interactions, particularly root exudates, in maintaining intercropping advantages in soybean/maize intercropping systems remains unclear. Methods: This study aimed to investigate the differences in root exudates between intercropping and monocropping systems through two pot experiments using metabolomics methods. Multiple omics analyses were conducted to explore correlations between differential metabolites and the community of Arbuscular Mycorrhizal Fungi (AMF), shedding light on the mechanisms underlying the dominance of intercropping from the perspective of root exudates-soil microorganism interactions. Results and discussion: The study revealed that intercropping significantly increased the types and contents of root exudates, lowered soil pH, increased the availability of nutrients like available nitrogen (AN) and available phosphorus (AP), and enhanced AMF colonization, resulting in improving the community composition of AMF. Besides, root exudates in intercropping systems differed significantly from those in monocropping, with 41 and 39 differential metabolites identified in the root exudates of soybean/maize, predominantly amino acids and organic acids. The total amount of amino acids in the root exudates of soybean intercropping was 3.61 times higher than in monocropping. Additionally, the addition of root exudates significantly improved the growth of soybean/maize and AMF colonization, with the mycorrhizal colonization rate in intercropping increased by 105.99% and 111.18% compared to monocropping, respectively. The identified metabolic pathways associated with root exudates were closely linked to plant growth, soil fertility improvement, and the formation of AMF. Correlation analysis revealed a significant relationship (P < 0.05) between certain metabolites such as tartaric acid, oxalic acid, malic acid, aspartic acid, alanine, and the AMF community. Notably, the photosynthetic carbon fixation pathway involving aspartic acid showed a strong association with the function of Glomus_f_Glomerace, the dominant genus of AMF. A combined analysis of metabolomics and high throughput sequencing revealed that the root exudates of soybean/maize intercropping have direct or indirect connections with AMF and soil nutrients. Conclusion: This suggests that the increased root exudates of the soybean/maize intercropping system mediate an improvement in AMF community composition, thereby influencing soil fertility and maintaining the advantage of intercropping. [ABSTRACT FROM AUTHOR]

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Summary: Rhizomicrobiome plays important roles in plant growth and health, contributing to the sustainable development of agriculture. Plants recruit and assemble the rhizomicrobiome to satisfy their functional requirements, which is widely recognized as the 'cry for help' theory, but the intrinsic mechanisms are still limited.In this study, we revealed a novel mechanism by which plants reprogram the functional expression of inhabited rhizobacteria, in addition to the de novo recruitment of soil microbes, to satisfy different functional requirements as plants grow. This might be an efficient and low‐cost strategy and a substantial extension to the rhizomicrobiome recruitment theory.We found that the plant regulated the sequential expression of genes related to biocontrol and plant growth promotion in two well‐studied rhizobacteria Bacillus velezensis SQR9 and Pseudomonas protegens CHA0 through root exudate succession across the plant developmental stages. Sixteen key chemicals in root exudates were identified to significantly regulate the rhizobacterial functional gene expression by high‐throughput qPCR.This study not only deepens our understanding of the interaction between the plant–rhizosphere microbiome, but also provides a novel strategy to regulate and balance the different functional expression of the rhizomicrobiome to improve plant health and growth. [ABSTRACT FROM AUTHOR]

Summary: Plants impact the development of their rhizosphere microbial communities. It is yet unclear to what extent the root cap and specific root zones contribute to microbial community assembly.To test the roles of root caps and root hairs in the establishment of microbiomes along maize roots (Zea mays), we compared the composition of prokaryote (archaea and bacteria) and protist (Cercozoa and Endomyxa) microbiomes of intact or decapped primary roots of maize inbred line B73 with its isogenic root hairless (rth3) mutant. In addition, we tracked gene expression along the root axis to identify molecular control points for an active microbiome assembly by roots.Absence of root caps had stronger effects on microbiome composition than the absence of root hairs and affected microbial community composition also at older root zones and at higher trophic levels (protists). Specific bacterial and cercozoan taxa correlated with root genes involved in immune response.Our results indicate a central role of root caps in microbiome assembly with ripple‐on effects affecting higher trophic levels and microbiome composition on older root zones. [ABSTRACT FROM AUTHOR]

In pioneering studies on plant-aphid interactions, we have observed that Vicia faba plants infested by aphids can transmit signals via the rhizosphere that induce aboveground defence in intact, neighbouring plants. The aphid parasitoid Aphidius ervi is significantly attracted towards intact broad bean plants grown in a hydroponic solution previously harbouring Acyrtosiphon pisum-infested plants. To identify the rhizosphere signal(s) possibly mediating this belowground plant-plant communication, root exudates were collected using Solid-Phase Extraction (SPE) from 10-day old A. pisum-infested and un-infested Vicia faba plants hydroponically grown. To verify the ability of these root exudates to trigger defence mechanisms against the aphids we added them to V. fabae plants grown in hydroponic solution, and tested these plants in the wind-tunnel bioassay to assess their attractiveness towards the aphids' parasitoids A. ervi. We identified three small volatile lipophilic molecules as plant defence elicitors: 1-octen-3-ol, sulcatone and sulcatol, in SPE extracts of A. pisum-infested broad bean plants. Inwind tunnel assays, we recorded a significant increase in the attractiveness towards A. ervi of V. faba plants grown in hydroponic solution treated with these compounds, compared to plants grown in hydroponic treated with ethanol (control). Both 1-octen-3-ol and sulcatol have asymmetrically substituted carbon atoms at positions 3 and 2, respectively. Hence, we tested both their enantiomers alone or in mixture. We highlighted a synergistic effect on the level of attractiveness towards the parasitoid when testing the three compounds together in respect to the response recorded against them singly tested. These behavioural responses were supported by the characterization of headspace volatiles released by tested plants. These results shed new light on the mechanisms underlying plant-plant communication belowground and prompt the use of bio-derived semiochemicals for a sustainable protection of agricultural crops. [ABSTRACT FROM AUTHOR]

Aims: This study aimed to explore the mechanisms of the priming effect (PE) induced by root exudates on soil carbon pools at different stages of decomposition. Methods: The 13 C-labeled and unlabeled glucose, glycine and oxalic acid were added to soils of 15-year old-field (OF), 15-year bare-fallow (BF) and 23-year bare-fallow plus additional 815-day laboratory incubation (BF+), which represented relatively active (OF) and more resistant (BF and BF+) soil carbon pools. The 13 C stable isotope was used to determine the PE and net carbon balance, and cumulative CO2 emission, microbial biomass carbon and dissolved organic carbon were also reported. Results: Relative to the control, soil organic carbon (SOC) decomposition in OF, BF and BF+ was stimulated by 17.3%, 20.8% and 21.5% with glucose addition, by 12.0%, 36.9% and 52.6% with glycine addition, and by 20.8%, 58.4% and 62.8% with oxalic acid addition, respectively. Overall, oxalic acid resulted in higher cumulative PE and lower net carbon balance relative to glucose and glycine in all three soils. Moreover, the PE of BF and BF+ were larger than that of OF induced by glucose, glycine and oxalic acid. Conclusions: Resistant soil carbon is more vulnerable to priming by root exudates compared to active soil carbon, and oxalic acid can induce a stronger PE than glucose and glycine, especially in more resistant soil carbon pools. [ABSTRACT FROM AUTHOR]

The use of biological inputs is an interesting approach to optimize crop production and reduce the use of chemical inputs. Understanding the chemical communication between bacteria and plants is critical to optimizing this approach. Recently, we have shown that Sphingomonas (S.) sediminicola can improve both nitrogen supply and yield in pea. Here, we used biochemical methods and untargeted metabolomics to investigate the chemical dialog between S. sediminicola and pea. We also evaluated the metabolic capacities of S. sediminicola by metabolic profiling. Our results showed that peas release a wide range of hexoses, organic acids, and amino acids during their development, which can generally recruit and select fast-growing organisms. In the presence of S. sediminicola, a more specific pattern of these molecules took place, gradually adapting to the metabolic capabilities of the bacterium, especially for pentoses and flavonoids. In turn, S. sediminicola is able to produce several compounds involved in cell differentiation, biofilm formation, and quorum sensing to shape its environment, as well as several molecules that stimulate pea growth and plant defense mechanisms. [ABSTRACT FROM AUTHOR]

The objective of this study was to evaluate the impact of phosphorus deficiency in the interaction between the biofertilizer Serratia sp. S119 strain and peanut and maize plants. Plant assays were performed under P deficiency and several parameters of plant-bacterial interaction were measured. Bacterial chemotaxis, root colonization and biofilm production were measured as the first steps of the plant-bacteria interaction. Also, the effect of root exudates of plants grown in P deficiency on the ability to solubilize insoluble phosphate of Serratia sp. S119 was analyzed. Results were further correlated with analyzes of the pqqE gene expression and the measurement of the activity of pqq promoter. Finally, the effect of the root exudates on the ACC deaminase activity of S119 strain was measured. Results indicated that plant root exudates obtained under P-deficient conditions positively attract Serratia sp. S119 and stimulate its colonization and biofilm formation. These plant root compounds showed also to produce a stimulating effect of the phosphate solubilization ability and ACC deaminase activity of S119 strain. Finally, root exudates obtained under P-deficient conditions induce pqqE gene expression and the activity of pqq promoter of S119 strain. In conclusion, root exudates contain specific signal molecules that attract phosphate solubilizing bacteria to the rhizosphere of peanut and maize plants growing in P deficient condition. Signal molecules would favor the colonization and establishment of the PSB strain in the surface tissues as well as in inner tissues, stimulate phosphate solubilization ability and enhance ACC deaminase activity to decrease plant's nutritional stress response. [ABSTRACT FROM AUTHOR]

Root exudates, as an important form of material input from plants to the soil, regulate the carbon input and efflux of plant rhizosphere soil and play an important role in maintaining the carbon and nutrient balance of the whole ecosystem. Root exudates are notoriously difficult to collect due to their underlying characteristics (e.g., low concentration and fast turnover rate) and the associated methodological challenges of accurately measuring root exudates in native soils. As a result, up until now, it has been difficult to accurately quantify the soil organic carbon input from root exudates to the soil in most studies. In recent years, the contribution and ecological effects of root exudates to soil organic carbon input and efflux have been paid more and more attention. However, the ecological mechanism of soil organic carbon input and efflux mediated by root exudates are rarely analyzed comprehensively. In this review, the main processes and influencing factors of soil organic carbon input and efflux mediated by root exudates are demonstrated. Soil minerals and soil microbes play key roles in the processes. The carbon allocation from plants to soil is influenced by the relationship between root exudates and root functional traits. Compared with the quantity of root exudates, the response of root exudate quality to environmental changes affects soil carbon function more. In the future, the contribution of root exudates in different plants to soil carbon turnover and their relationship with soil nutrient availability will be accurately quantified, which will be helpful to understand the mechanism of soil organic carbon sequestration. [ABSTRACT FROM AUTHOR]

Summary: Invasive plants can change soil properties resulting in improved growth. Although invaders are known to alter soil chemistry, it remains unclear if chemicals secreted by roots facilitate invasive plant–soil mutualisms.With up to 19 confamilial pairs of invasive and native plants, and most of which were congeners, we explored the root exudate‐induced changes in plant–arbuscular mycorrhizal (AM) fungal mutualisms.We found that, relative to natives, invaders had greater AM colonization, greater biomass and their root exudates contained higher concentrations of two common chemical signals – quercetin and strigolactones – which are known to stimulate AM fungal growth and root colonization. An exudate exchange experiment showed that root exudates from invaders increased AM colonization more than exudates from natives. However, application of activated carbon led to greater reduction in AM colonization and plant biomass for invaders than natives, suggesting stronger effects of chemical signals in root exudates from invaders.We show that nonnative plants promote interactions with soil mutualists via enhancing root exudate chemicals, which could have important implications for invasion success. See also the Commentary on this article by Lekberg & Callaway, 236: 797–799. [ABSTRACT FROM AUTHOR]

Previous studies have indicated that some Rehmannia glutinosa Leucine-rich repeat receptor-like protein kinases (LRR-RLKs) are involved in the formation of replant disease. However, it remains unclear how the interaction of LRR-RLKs with a key factor, the interaction between root exudates and Fusarium oxysporum, results in formation of replant disease. In this study, the influences of root exudates, F. oxysporum and the interaction of these two factors on expression of nine R. glutinosa LRR-RLKs (RgLRRs) were analyzed. The resulting eight RgLRRs of them were highly expressed at the early stage, and rapidly declined at later stages under mixed treatment of root exudates and F. oxysporum. The functions of nine RgLRRs under root exudates, F. oxysporum and mixed treatment of root exudates and F. oxysporum were preliminarily analyzed using transient overexpression and RNAi experiments. The results showed that high expression of RgLRR19, RgLRR21, RgLRR23 and RgLRR29 could decrease the damage to root cells from the mixed treatment of root exudates and F. oxysporum, but the interference of these genes enhanced the damage levels of root cells. Based on this, stable transgenic R. glutinosa seedlings were acquired. Overexpression of RgLRR29 conferred resistance of R. glutinosa seedlings to root exudates, F. oxysporum and mixed treatment. These results indicated that the continuous proliferation of F. oxysporum supported by root exudates altered the expression patterns of RgLRRs in R. glutinosa, then disordered the growth and development of R. glutinosa, finally leading to the formation of replant disease. [ABSTRACT FROM AUTHOR]

Plants are the main sources of soil organic carbon in forest ecosystems. Photosynthetic C assimilated by plants enters the soil through litter, root litter, and root exudates. However, it remains unclear how litter changes affect the plant-C input. We aimed to quantify the responses of C inputs via the litter, root litter, and root exudates to litter alteration. We conducted a 2 years litter manipulation (litter removal, litter addition, and control) experiment in a Pinus massoniana plantation and studied its impacts on plant-C inputs via litter, fine root litter, and root exudates. The results show that litter removal significantly increases the litterfall in summer and autumn and reduces root-C exudation rates in spring but has no effect on the C input by fine roots. The annual C inputs by litter, fine roots, and root exudates in the control plots were 348.28, 42.39, and 17.44 g C m−2, respectively, accounting for 85.34%, 10.39%, and 4.27% of the total C input, respectively. Litter removal increases the plant annual total C input by 24.55% due to the decrease in the root exudate-C input by 30.50% and increase in the litter-C input by 31.12%. In contrast, litter addition insignificantly affects the C input through litter, fine roots, or root exudates. Increasing the litter-C input and decreasing the root exudate-C input by litter removal are a plant strategy based on which forest growth can be maximized in the short term. The increased plant-C input due to litter removal mitigates the effects of litter alteration. This study is of great significance for understanding plant growth strategies. [ABSTRACT FROM AUTHOR]

Aims: The use of rootstock is effective at protecting plants from soil-borne diseases, however, the underlying mechanisms remain to be elucidated. Methods: In this study, the root-associated microbiomes and root exudate profiles of rootstock (grafted) and self-rooted (ungrafted) watermelon plants grown in plastic shelters heavily infected with Fusarium oxysporum f. sp. niveum (FON) were characterized. Results: We showed that grafting markedly controlled Fusarium wilt disease, greatly reduced FON abundance in the rhizoplane and endosphere, and improved microbial diversity across rhizosphere to endosphere in continuous cropping soils. We further found that grafting significantly changed the composition of root-associated microbiomes, improved microbial association network complexity, and had potential beneficial bacterial taxa like Streptomycetales and Sphingomonadales, and fungal taxa like Capnodiales and Sebacinales significantly enriched in grafted watermelon. The grafted watermelon also possessed a distinct root exudate profile from the ungrafted watermelon and rootstock plants, with organic acids (potential autotoxins) significantly depleted but more plant defense-related metabolites such as organosulfur compounds and benzenoids enriched in comparison to ungrafted watermelon. Conclusion: Together, our results suggest that grafting facilitates plant disease resistance potentially by direct antagonism effect through root exudates and indirectly by shaping the protective root-associated microbiomes. [ABSTRACT FROM AUTHOR]

Root exudates can significantly modify microbial activity and soil organic matter (SOM) mineralization. However, how root exudates and their C/N stoichiometric ratios control rice field (paddy) soil C mineralization is poorly understood. This study used a mixture of glucose, oxalic acid, and alanine as root exudate mimics for three C/N stoichiometric ratios (CN6, CN10, and CN80) to explore the underlying mechanisms involved in SOM mineralization. The input of root exudates enhanced CO2 emissions by 1.8–2.3‐fold that of soil with only C additions (C‐only). Artificial root exudates with low C/N ratios (CN6 and CN10) increased the metabolic quotient (qCO2) by 12% over those with higher stoichiometric ratios (CN80 and C‐only), suggesting a relatively high energy demand for microorganisms to acquire organic N from SOM by increasing N‐hydrolase production. The increase of stoichiometric ratios of C‐ to N‐hydrolase [β‐1,4‐glucosidase to β‐1,4‐N‐acetyl glucosaminidase (NAG)] promoted SOM degradation compared to those involved in organic C‐ and N‐degradation, which had a significant positive correlation with qCO2. The stoichiometric ratios of microbial biomass were positively correlated with C use efficiency, indicating root exudates with higher C/N ratios provide an undersupply of N for microorganisms that trigger the release of N‐degrading extracellular enzymes. Our findings showed that the C/N stoichiometry of root exudates controlled SOM mineralization by affecting the specific response of the microbial biomass through the activity of C‐ and N‐releasing extracellular enzymes to adjust the microbial C/N ratio. [ABSTRACT FROM AUTHOR]

Understanding belowground chemical interactions between plant roots and plant-parasitic nematodes is immensely important for sustainable crop production and soilborne pest management. Due to metabolic diversity and ever-changing dynamics of root exudate composition, the impact of only certain molecules, such as nematode hatching factors, repellents, and attractants, has been examined in detail. Root exudates are a rich source of biologically active compounds, which plants use to shape their ecological interactions. However, the impact of these compounds on nematode parasitic behavior is poorly understood. In this study, we specifically address this knowledge gap in two cyst nematodes, Globodera pallida , a potato cyst nematode and the newly described species, Globodera ellingtonae. Globodera pallida is a devastating pest of potato (Solanum tuberosum) worldwide, whereas potato is a host for G. ellingtonae , but its pathogenicity remains to be determined. We compared the behavior of juveniles (J2s) hatched in response to root exudates from a susceptible potato cv. Desirée, a resistant potato cv. Innovator, and an immune trap crop Solanum sisymbriifolium (litchi tomato – a wild potato relative). Root secretions from S. sisymbriifolium greatly reduced the infection rate on a susceptible host for both Globodera spp. Juvenile motility was also significantly influenced in a host-dependent manner. However, reproduction on a susceptible host from juveniles hatched in S. sisymbriifolium root exudates was not affected, nor was the number of encysted eggs from progeny cysts. Transcriptome analysis by using RNA-sequencing (RNA-seq) revealed the molecular basis of root exudate-mediated modulation of nematode behavior. Differentially expressed genes are grouped into two major categories: genes showing characteristics of effectors and genes involved in stress responses and xenobiotic metabolism. To our knowledge, this is the first study that shows genome-wide root exudate-specific transcriptional changes in hatched preparasitic juveniles of plant-parasitic nematodes. This research provides a better understanding of the correlation between exudates from different plants and their impact on nematode behavior prior to the root invasion and supports the hypothesis that root exudates play an important role in plant-nematode interactions. [ABSTRACT FROM AUTHOR]

Amendments, such as biochar, compost, and iron grit, used in phytostabilization studies, showed positive effects on soil physico-chemical properties, plant growth, and the microbial community. However, assisted phytostabilization studies do not always focus on the rhizosphere area where soil, plants, and microorganisms are affected by the amendments and plants and microorganisms can also interact with each other. The aims of this study were to evaluate the effects of amendment application on the exudation of organic acids by Salix viminalis plant roots, as well as the effects of amendments and plant development on the soil CHNS contents and the microbial community activity and diversity, assessed by measuring enzyme activities and using Biolog EcoPlatesTM tests and next-generation sequencing analyses. The results of the mesocosm experiment showed that soil C, H, and N contents were increased by amendment application, especially biochar and compost, while the one of S decreased. Enzyme activities, microbial activity, and diversity were also increased by the addition of amendments, except iron grit alone. Finally, the quantity of organic acids exuded by roots were little affected by amendments, which could in part explain the reduced effect of plant development on soil chemical and microbiological parameters. In conclusion, this study showed in particular that biochar and compost were beneficial for the soil CHN contents and the microbial community while affecting poorly Salix viminalis root exudates. [ABSTRACT FROM AUTHOR]

Soil salinization has adverse effects on plant growth due to direct ion toxicity or secondary damage, such as mineral nutrition imbalance and the water stress caused by low osmotic potential. The rhizosphere processes of plants are likely to play an important role in the biological improvement of saline soil. However, the understanding of this remains limited. This review summarizes the progress made recently in exploring the effects of root‐associated microbes especially from halophytic species on the growth stimulation of plants under salinity. For example, halophytes attract and absorb beneficial rhizosphere growth‐promoting bacteria by producing rhizosphere exudates such as organic acids and enzymes, which is conducive to plant growth under salt stress. The plant growth‐promoting exogenous rhizobacteria (PGPR), attached to the roots of halophytes, can promote the growth of plants mainly through the improved absorption of nutrients by the host plants or through producing plant growth regulators. In addition, the colonization of endophytes can regulate plant ion balance and produce secondary metabolites such as growth‐promoting hormone and extracellular enzymes, activating antioxidant systems, and inducing plant system resistance against pathogenic microorganisms, thus promoting the growth of plants under salt stress. The inoculation of arbuscular mycorrhizal fungi (AMF) under salt stress can facilitate plants to change the ion balance or obtain water from the soil, and that the formation of other hyphae may promote the transfer of water and nutrients to plants. Therefore, understanding the effects of root‐associated microbes on the growth stimulation of plants under salinity is of great significance to improving their salt tolerance, so as to improve saline‐alkali land for the construction of a more effective biological improvement model. [ABSTRACT FROM AUTHOR]

Changes in root exudates and rhizospheric microbial functional capacities involved in carbon (C) decomposition and nitrogen (N) transformation of aluminum (Al)-tolerant and Al-sensitive soybean genotypes were investigated under Al stress. Rhizosphere soils were collected from rhizobox systems with two soybean genotypes. A wide range of microbial functional capacities were determined by functional gene arrays. Microbial functional capacities of rhizospheres were distinct between Al-tolerant and Al-sensitive genotypes, which were related to exchangeable Al concentrations. Functional capacities associated with decomposition of chemically recalcitrant C were lower in Al-tolerant than Al-sensitive genotypes, which was negatively correlated with the secretion rate of succinic acid. Microbial functional capacities were higher for nitrification but lower for denitrification in the rhizosphere of Al-tolerant than Al-sensitive genotype, which coincided with higher succinic acid secretion and lower abundance of microbial oxygen stress genes. Soybean biomass increased logarithmically with nitrification capacities. We concluded that exchangeable Al concentrations, root exudation, and microbial C and N cycling capacities were intrinsically linked, which served as a key mechanism for legume genotypes toward enhancing tolerance to Al stress occurring in acid soils. [ABSTRACT FROM AUTHOR]

Aims: The aim of this study was to evaluate its feasibility of a non-symbiotic nitrogen-fixing strain, Ac63 (Azotobacter chroococcum), to promote biomass of common vegetable crops and its colonization mechanisms in their roots. Methods: Root exudates of common vegetables, including Amaranthus tricolor (AT), Willow amaranth (WA), Chrysanthemum coronarium (CC), cabbage, and lettuce, were collected, and a chemotaxis assay with Ac63 was performed. Components in exudates for the most differential chemotaxis effect crops (AT and lettuce) were determined with GC-MS. Then, the traditional screening strategies of chemotaxis, swarming, and in vitro were utilized to find the signal molecule for this strain. Finally, the colonization effects of Ac63 in roots of these two crops were verified with a soil pot experiment. Results: Chemotaxis effects of root exudates on Ac63 follow the lists of AT > WA > CC > cabbage ≈ control (water) ≈ lettuce. With a 30-μM concentration of l-glutamic acid, bacterial amount of Ac63 in chemotaxis and in vitro was observed with 2.9- and 7.4-times enhancement compared with that in the control. Laser confocal microscopy indicated that l-glutamic acid induced Ac63 to form a robust biofilm in roots, suggesting that l-glutamic acid is a signal molecule for the colonization of this strain. Soil pot assay showed that the biomass, chlorophyll, and available nitrogen of AT significantly increased than those of lettuce after Ac63 inoculation, resulting from this strain was substantially increased in roots of AT with l-glutamic acid secretion. Conclusion: l-Glutamic acid induced the colonization of high-efficiency nitrogen-fixing strain Ac63 in AT roots, which provides a practical information for its agricultural applications. [ABSTRACT FROM AUTHOR]

Copyright of Journal of Hydrobiology / Shuisheng Shengwu Xuebao is the property of Editorial Department of Journal of Hydrobiology and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Chemotaxis towards root exudates and subsequent biofilm formation are very important for root colonization and for providing the beneficial functions of plant growth-promoting rhizobacteria (PGPRs). In this study, in comparison with other root-secreted compounds, d-galactose in the root exudates of cucumber was found to be a strong chemoattractant at the concentration of 1 μM for Bacillus velezensis SQR9. Chemotaxis assays with methyl-accepting chemotaxis proteins (MCPs) deletion strains demonstrated that McpA was solely responsible for chemotaxis towards d-galactose. Interestingly, d-galactose significantly enhanced the biofilm formation of SQR9 in an McpA-dependent manner. Further experiment showed that d-galactose also enhanced root colonization by SQR9. In addition, the secretion of d-galactose by cucumber roots could be induced by inoculation with SQR9, indicating that d-galactose may be an important signal in the interaction between plant and SQR9. These findings suggested that the root-secreted d-galactose was a signal, the secretion of which was induced by the beneficial bacteria, and which in turn induced colonization of the bacteria. [ABSTRACT FROM AUTHOR]

Key message: This article describes the composition of root exudates, how these metabolites are released to the rhizosphere and their importance in the recruitment of beneficial microbiota that alleviate plant stress. Metabolites secreted to the rhizosphere by roots are involved in several processes. By modulating the composition of the root exudates, plants can modify soil properties to adapt and ensure their survival under adverse conditions. They use several strategies such as (1) changing soil pH to solubilize nutrients into assimilable forms, (2) chelating toxic compounds, (3) attracting beneficial microbiota, or (4) releasing toxic substances for pathogens, etc. In this work, the composition of root exudates as well as the different mechanisms of root exudation have been reviewed. Existing methodologies to collect root exudates, indicating their advantages and disadvantages, are also described. Factors affecting root exudation have been exposed, including physical, chemical, and biological agents which can produce qualitative and quantitative changes in exudate composition. Finally, since root exudates play an important role in the recruitment of mycorrhizal fungi and plant growth-promoting rhizobacteria (PGPR), the mechanisms of interaction between plants and the beneficial microbiota have been highlighted. [ABSTRACT FROM AUTHOR]

Question: Plant community assembly has traditionally been viewed from the perspective of plant resource niches and competition and, more recently, facilitation in stressful environments. However, plants also engage in biotic interactions with neighbours and soil microbiome by producing chemically diverse root exudates. Root exudates have the potential to affect plant community productivity and composition by mediating plant interactions, fostering beneficial microbial interactions and affecting nutrient cycling. However, empirical evidence for the role of root exudates in plant community dynamics is still lacking, particularly under field conditions. Location: Two calcareous grasslands in Western Estonia, Europe. Methods: We tested the role of root exudates in shaping plant community productivity and composition by applying activated carbon powder, known to adsorb root exudates from soil solution, to two intact species‐rich grasslands. The experiment continued for four years and was combined with fertiliser application. Results: We found that the application of activated carbon triggered significant changes in root morphology, plant productivity and growth form composition that were distinct from the effects of fertilisation. Community responses were site‐specific and varied with the duration of activated carbon application. Activated carbon addition increased the production of finer roots in a community with shallow soil in the first year of the experiment and significantly reduced above‐ground productivity at both sites by the end of the fourth growth season. The application of activated carbon promoted legume abundance at both sites and suppressed forb dominance at the site with shallow soil. Conclusion: Our findings suggest that chemical interactions in the plant rhizosphere may play an important role in shaping grassland productivity and plant community composition. We also show that activated carbon can be used as an effective tool for manipulating plant interactions in intact grasslands occupied by long‐lived individuals. [ABSTRACT FROM AUTHOR]

Root exudation is an important process determining plant interactions with the soil environment. Many studies have linked this process to soil nutrient mobilization. Yet, it remains unresolved how exudation is controlled and how exactly and under what circumstances plants benefit from exudation. The majority of root exudates including primary metabolites (sugars, amino acids, and organic acids) are believed to be passively lost from the root and used by rhizosphere-dwelling microbes. In this review, we synthetize recent advances in ecology and plant biology to explain and propose mechanisms by which root exudation of primary metabolites is controlled, and what role their exudation plays in plant nutrient acquisition strategies. Specifically, we propose a novel conceptual framework for root exudates. This framework is built upon two main concepts: (1) root exudation of primary metabolites is driven by diffusion, with plants and microbes both modulating concentration gradients and therefore diffusion rates to soil depending on their nutritional status; (2) exuded metabolite concentrations can be sensed at the root tip and signals are translated to modify root architecture. The flux of primary metabolites through root exudation is mostly located at the root tip, where the lack of cell differentiation favors diffusion of metabolites to the soil. We show examples of how the root tip senses concentration changes of exuded metabolites and translates that into signals to modify root growth. Plants can modify the concentration of metabolites either by controlling source/sink processes or by expressing and regulating efflux carriers, therefore challenging the idea of root exudation as a purely unregulated passive process. Through root exudate flux, plants can locally enhance concentrations of many common metabolites, which can serve as sensors and integrators of the plant nutritional status and of the nutrient availability in the surrounding environment. Plant-associated micro-organisms also constitute a strong sink for plant carbon, thereby increasing concentration gradients of metabolites and affecting root exudation. Understanding the mechanisms of and the effects that environmental stimuli have on the magnitude and type of root exudation will ultimately improve our knowledge of processes determining soil CO2 emissions, ecosystem functioning, and how to improve the sustainability of agricultural production. [ABSTRACT FROM AUTHOR]

Aims: Rhizosphere metabolomics can potentially help us to better understand belowground root-environment interactions that are mediated by root exudation in the rhizosphere. The main goals of the present work were to characterize the pattern of maize root exudation in response to straw-derived biochar (BC) addition and chemical nitrogen (N) fertilizer reduction and to explore the underlying mechanisms.Methods: Two sets of pot experiments were performed independently that involved planting maize in aquic brown soil to which BC was added at dosages of 0 or 5% (w/w, equivalent to 112.5 t ha−1) combined with urea N application at rates of 150 kg ha−1 (100%) or 105 kg ha−1 (70%) for a total of four treatments. Samples containing root exudates were analyzed using nuclear magnetic resonance, and quantitative real-time reverse transcription-PCR (qRT-PCR) was performed to analyze gene expression in maize roots.Results: The 5% BC addition significantly influenced the global rhizosphere metabolome of the maize seedlings regardless of the N application level, but without BC addition, the rhizosphere metabolome was not significantly affected by a 30% reduction in N. The effects of N reduction on the metabolite profiling of the native root exudates were stronger than those of BC addition and an obvious interaction was observed between BC addition and N reduction. BC addition combined with N reduction significantly changed the levels of some amino acids (e.g., causing a 1.75-fold increase in isoleucine) and organic acids (e.g., causing a 2.16-fold increase in malonate and a 2.15-fold increase in acetate) in the root exudates. Soil environmental factors, including the size of NH4+-N pool and total P content, had a strong positive correlation with rhizosphere metabolome. The decrease in root biomass caused by N reduction was partially mitigated by BC addition, and the expression of ZmMATE1 (for multi-drug and toxic compound extrusion transporter) in root was significantly up-regulated (P < 0.05) by BC addition and N reduction.Conclusions: Maize roots can reshape their rhizosphere metabolome under BC addition combined with N reduction and its underlying mechanism may involve the synergistic effects of soil environmental factors, root growth, and the expression of transport-associated genes. [ABSTRACT FROM AUTHOR]

The rhizospheric microbiome is clearly affected by plant species and certain of their functional traits. These functional traits allow plants to adapt to their environmental conditions by acquiring or conserving nutrients, thus defining different ecological resource-use plant strategies. In the present study, we investigated whether plants with one of the two nutrient-use strategies (conservative versus exploitative) could influence fungal communities involved in soil organic matter degradation and root exudate assimilation, as well as those colonizing root tissues. We applied a DNA-based, stable-isotope probing (DNA-SIP) approach to four grass species distributed along a gradient of plant nutrient resource strategies, ranging from conservative to exploitative species, and analyzed their associated mycobiota composition using a fungal internal transcribed spacer (ITS) and Glomeromycotina 18S rRNA gene metabarcoding approach. Our results demonstrated that fungal taxa associated with exploitative and conservative plants could be separated into two general categories according to their location: generalists, which are broadly distributed among plants from each strategy and represent the core mycobiota of soil organic matter degraders, root exudate consumers in the root-adhering soil, and root colonizers; and specialists, which are locally abundant in one species and more specifically involved in soil organic matter degradation or root exudate assimilation on the root-adhering soil and the root tissues. Interestingly, for arbuscular mycorrhizal fungi analysis, all plant roots were mainly colonized by Glomus species, whereas an increased diversity of Glomeromycotina genera was observed for the exploitative plant species Dactylis glomerata. [ABSTRACT FROM AUTHOR]

Summary: Root–soil interactions fundamentally affect the terrestrial carbon (C) cycle and thereby ecosystem feedbacks to climate change. This study addressed the question of whether the secondary metabolism of different temperate forest tree species can affect soil microbial respiration. We hypothesized that phenolics can both increase and decrease respiration depending on their function as food source, mobilizer of other soil resources, signaling compound, or toxin. We analyzed the phenolic compounds from root exudates and root tissue extracts of six tree species grown in a glasshouse using high‐performance liquid chromatography. We then tested the effect of individual phenolic compounds, representing the major identified phenylpropanoid compound classes, on microbial respiration through a 5‐d soil incubation. Phenolic root profiles were highly species‐specific. Of the eight classes identified, flavonoids were the most abundant, with flavanols being the predominating sub‐class. Phenolic effects on microbial respiration ranged from a 26% decrease to a 46% increase, with reduced respiration occurring in the presence of compounds possessing a catechol ring. Tree species variation in root phenolic composition influences the magnitude and direction of root effects on microbial respiration. Our data support the hypothesis that functional group rather than biosynthetic class determines the root phenolic effect on soil C cycling. [ABSTRACT FROM AUTHOR]

Aims: Nitrogen supply and atmospheric CO2 concentration ([CO2]) could influence root exudates directly by altering compound concentrations in roots and indirectly by regulating root morphology. This study assessed these direct and indirect effects on cucumber root exudation.Methods: Cucumber roots with various morphological traits were obtained in different combinations of nitrogen supplies and [CO2] treatments. Then, the correlations between ten compounds in root exudates and their concentrations in root extracts as well as root morphological traits were evaluated.Results: In case of root exudates, the amounts of sugars were more closely correlated to the root surface area, whereas organic acids and amino acids were more closely associated with the number of root tips. Moreover, fructose, glucose, sucrose and oxalic acid in root exudates were correlated to their concentrations in root extracts, whereas there was little correlation between root exudates and extracts for malic acid, citric acid or four amino acids.Conclusions: Sugars were probably released from the whole roots by passive or facilitated diffusion, so both the direct and indirect effects were important. Organic acids and amino acids were mainly secreted from the root apices by active transport, thus the indirect effect was more important. [ABSTRACT FROM AUTHOR]

The effect of zinc (Zn) deficiency and excessive bicarbonate on the allocation and exudation of organic acids in plant organs (root, stem, and leaf) and root exudates of two Moraceae plants ( Broussonetia papyrifera and Morus alba) were investigated. Two Moraceae plants were hydroponically grown and cultured in nutrient solution in four different treatments with 0.02 mM Zn or no Zn, combined with no or 10 mM bicarbonate. The variations of organic acids in different plant organs were similar to those of root exudates in the four treatments except B. papyrifera, which was in a treatment that was a combination of 0.02 mM Zn and no bicarbonate. The response characteristics in the production, translocation, and allocation of organic acids in the plant organs and root exudates varied with species and treatments. Organic acids in plant organs and root exudates increased under Zn-deficient conditions, excessive bicarbonate, or both. An increase of organic acids in the leaves resulted in an increase of root-exuded organic acids. B. papyrifera translocated more oxalate and citrate from the roots to the rhizosphere than M. alba under the dual influence of 10 mM bicarbonate and Zn deficiency. Organic acids of leaves may be derived from dark respiration and photorespiration. By comparison, organic acids in stems, roots, and root exudates may be derived from dark respiration and organic acid translocation from the leaves. These results provide evidence for the selective adaptation of plants to environments with low Zn levels or high bicarbonate levels such as a karst ecosystem. [ABSTRACT FROM AUTHOR]

Aims: Rhizodeposition is an important energy source for soil microorganisms. It is therefore crucial to estimate the distribution of root derived carbon (C) in soil and how it changes with soil water content.Methods: We tested how drought affects exudate distribution in the rhizosphere by coupling 14CO2 labelling of plants and phosphor imaging to estimate C allocation in roots. Rhizosphere water content was visualized by neutron radiography. A numerical model was employed to predict the exudate release and its spatiotemporal distribution along and around growing roots.Results: Dry and wet plants allocated similar amounts of 14C into roots but root elongation decreased by 48% in dry soil leading to reduced longitudinal rhizosphere extension. Rhizosphere water content was identical (31%) independent of drought, presumably because of the high water retention by mucilage. The model predicted that the increase in rhizosphere water content will enhance diffusion of exudates especially in dry soil and increase their microbial decomposition.Conclusion: Root growth and rhizosphere water content play an important role in C release by roots and in shaping the profiles of root exudates in the rhizosphere. The release of mucilage may be a plant strategy to maintain fast diffusion of exudates and high microbial activity even under water limitation. [ABSTRACT FROM AUTHOR]

Previous studies demonstrated that the Chryseobacterium sp. WR21 could effectively control the bacterial wilt disease caused by Ralstonia solanacearum through effective root colonization. The strain WR21 exhibited a low level of DNA homology with Chryseobacterium strains DSM 15235 (24.1%), DSM 17724 (24.8%), and DSM 18014 (10.4%), suggesting that WR21 may represent a novel species, for which the name Chryseobacterium nankingense sp. nov. is proposed. The in vitro competition experiments with strain WR21 indicated it significantly inhibited growth of the pathogen in co-culture with six of nine tested nutrients (e.g. root exudates) that could be utilized by strain WR21 and R. solanacearum. Similar trends were observed in co-culturing experiments using tissue exudates of tomato. A positive relationship (r = 0.785) was noticed between the differences in the average growth rate of both strains and the disease suppression effects. In conclusion, Chryseobacterium nankingense sp. nov. WR21 exhibits antagonism through nutrient competition that might be used for achieving biocontrol of Ralstonia solanacearum induced wilts. [ABSTRACT FROM AUTHOR]

Soil communities are diverse taxonomically and functionally. This ecosystem experiences highly complex networks of interactions, but may also present functionally independent entities. Plant roots, a metabolically active hotspot in the soil, take an essential part in below-ground interactions. While plants are known to release an extremely high portion of the fixated carbon to the soil, less information is known about the composition and role of C-containing compounds in the rhizosphere, in particular those involved in chemical communication. Specialized metabolites (or secondary metabolites) produced by plants and their associated microbes have a critical role in various biological activities that modulate the behavior of neighboring organisms. Thus, elucidating the chemical composition and function of specialized metabolites in the rhizosphere is a key element in understanding interactions in this below-ground environment. Here, we review key classes of specialized metabolites that occur as mostly non-volatile compounds in root exudates or are emitted as volatile organic compounds (VOCs). The role of these metabolites in below-ground interactions and response to nutrient deficiency, as well as their tissue and cell type-specific biosynthesis and release are discussed in detail. [ABSTRACT FROM AUTHOR]

Molecular signaling networks in the actinorhizal rhizosphere select host-compatible Frankia strains, trigger the infection process and eventually the genesis of nitrogen-fixing nodules. The molecular triggers involved remain difficult to ascertain. Root exudates (RE) are highly dynamic substrates that play key roles in establishing the rhizosphere microbiome. RE are known to induce the secretion by rhizobia of Nod factors, polysaccharides, and other proteins in the case of legume symbiosis. Next-generation proteomic approach was here used to decipher the key bacterial signals matching the first-step recognition of host plant stimuli upon treatment of Frankia coriariae strain BMG5.1 with RE derived from compatible (Coriaria myrtifolia), incompatible (Alnus glutinosa), and non-actinorhizal (Cucumis melo) host plants. The Frankia proteome dynamics were mainly driven by host compatibility. Both metabolism and signal transduction were the dominant activities for BMG5.1 under the different RE conditions tested. A second set of proteins that were solely induced by C. myrtifolia RE and were mainly linked to cell wall remodeling, signal transduction and host signal processing activities. These proteins may footprint early steps in receptive recognition of host stimuli before subsequent events of symbiotic recruitment. [ABSTRACT FROM AUTHOR]

Aim: The secretion of allelochemicals from plant roots plays a key role in soil sickness and soil-borne disease. The goal of this study was to investigate the role of allelopathic chemicals in Ralstonia solanacearum-infected tobacco roots. Methods: The organic acids investigated in the present study are major components of tobacco root exudates. Through a swarming assay, we assessed the chemotaxis and colonization of R. solanacearum in response to organic acids. Results: Fumaric acid was detected, and the results showed that this acid could serve as a semiochemical for attracting R. solanacearum and inducing the formation of biofilms of this species . The results also revealed that cinnamic and myristic acids play significant roles on swarming motility and chemotaxis. In addition, cinnamic, myristic and fumaric acids could enhance the expression of chemotaxis- and motility-related genes in R. solanacearum cultured in minimal medium. Furthermore, these three acids promote R. solanacearum colonization and accelerate disease progression in tobacco. Conclusion: Cinnamic, myristic and fumaric acids could serve as semiochemical attractants to induce the colonization and infection of R. solanacearum. The results of the present study enhance our understanding of the ecological effects of plant root exudates in plant-microbe interactions and help to reveal the relationship between tobacco bacterial wilt and the autotoxins and allelochemicals that accumulate from root exudates. [ABSTRACT FROM AUTHOR]

Bacillus amyloliquefaciens SQR9 is a plant growth-promoting rhizobacterium (PGPRs) that forms biofilm on the roots of plants and protects them from a variety of pathogens. In this study, we reported the effect of root exudates produced by cucumber ( Cucumis sativus L.) at different developmental stages on the biochemical composition of the biofilm matrix of SQR9. The results showed that the amino acids present in the root exudates of cucumber were responsible for triggering biofilm formation of SQR9. In addition, when root exudates harvested at different growth phases of cucumber were used as carbon sources for biofilm formation, the resulting biofilm matrixes differed both quantitatively and qualitatively. The biofilm matrix was mostly composed of amino groups observed by confocal laser scanning microscope (CLSM) hence the proteins formed the major component of the resulting extracellular polymeric substances (EPS). The potential use of amino acid-based dietary supplements to control biofilm formation in the plants may be a viable option to improve agricultural productivity by recruiting beneficial association with PGPRs in the manufacture of bio fertilizers or bio controls. [ABSTRACT FROM AUTHOR]

* Background and aims Potato (Solanum tuberosum) is an important food crop and is grown worldwide. It is, however, significantly sensitive to a number of soil-borne pathogens that affect roots and tubers, causing considerable economic losses. So far, most research on potato has been dedicated to tubers and hence little attention has been paid to root structure and function. * Methods In the present study we characterized root border cells using histochemical staining, immunofluorescence labelling of cell wall polysaccharides epitopes and observation using laser confocal microscopy. The monosaccharide composition of the secreted exudates was determined by gas chromatography of trimethylsilyl methylglycoside derivatives. The effects of root exudates and secreted arabinogalactan proteins on bacterial growth were investigated using in vitro bioassays. * Key Results Root exudate from S. tuberosum was highly enriched in galactose-containing molecules including arabinogalactan proteins as major components. Treatment of the root with an elicitor derived from Pectobacterium atrosepticum, a soil-borne pathogen of potato, altered the composition of the exudates and arabinogalactan proteins. We found that the growth of the bacterium in vitro was differentially affected by exudates from elicited and nonelicited roots (i.e. inhibition versus stimulation). * Conclusions Taken together, these findings indicate that galactose-containing polymers of potato root exudates play a central role in root-microbe interactions. [ABSTRACT FROM AUTHOR]

In this study, column leaching experiments were used to evaluate the leachability, distribution and bioavailability of phenanthrene and pyrene by root exudates from contaminated mangrove sediments. We observed that root exudates significantly promoted the release and enhanced the bioavailability of phenanthrene and pyrene from sediment columns. The concentration of phenanthrene and pyrene and cumulative content released from the analyzed sediment samples following root exudate rinsing decreased in the following order: citric acid > oxalic acid > malic acid. After elution, the total concentrations of phenanthrene and pyrene in sediment layers followed a descending order of bottom (9-12 cm) > middle (5-7 cm) > top (0-3 cm). Furthermore, a positive correlation between leachate pH values and PAH concentrations of the leachate was found. Consequently, the addition of root exudates can increase the leachability and bioavailability of phenanthrene and pyrene. [ABSTRACT FROM AUTHOR]

In order to evaluate the ecological consequences and potential mechanisms of specific C compounds on soil microbial processes under climate warming, we injected solutions of two modelled root exudates,2,6-di-tert-butyl-4-methylphenol(BHT) and1,2-benzenedicarboxylic acid, dibutyl ester(DBP), respectively, into soil at two concentrations (20 and 1000 µg g−1soil). For all treatments, soils amended with the two phenolic compounds were incubated at two temperatures (20°C and 30°C) for 30 days. The responses of soil enzyme activity and microbial property to modelled root exudates to some extent depended on temperature regime, exudation component, and addition concentration. For example, the addition of BHT tended to decrease the soil enzyme activities. However, DBP addition generally increased the two metabolic enzyme activities at 30°C, and tended to decrease the two enzyme activities at 20°C, but a significant reduction was observed only at a high concentration at 20°C. The microbial biomass and enzyme activity were generally lower at 30°C compared to those at 20°C, when averaged across all treatment combinations. Taken together, our results indicated that the amounts and quality of liable root-derived C can differentially affect microbial processes, and various environmental changes will greatly complicate root–microbe–soil interactions in forests. [ABSTRACT FROM PUBLISHER]

Copyright of Botany is the property of Canadian Science Publishing and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Background: As roots penetrate soil, specialized cells called 'border cells' separate from root caps and contribute a large proportion of exudates forming the rhizosphere. Their function has been unclear. Recent findings suggest that border cells act in a manner similar to that of white blood cells functioning in defense. Histone-linked extracellular DNA (exDNA) and proteins operate as 'neutrophil extracellular traps' to attract and immobilize animal pathogens. DNase treatment reverses trapping and impairs defense, and mutation of pathogen DNase results in loss of virulence. Scope: Histones are among a group of proteins secreted from living border cells. This observation led to the discovery that exDNA also functions in defense of root caps. Experiments revealed that exDNA is synthesized and exported into the surrounding mucilage which attracts, traps and immobilizes pathogens in a host-microbe specific manner. When this plant exDNA is degraded, the normal resistance of the root cap to infection is abolished. Conclusions: Research to define how exDNA may operate in plant immunity is needed. In the meantime, the specificity and stability of exDNA and its association with distinct microbial species may provide an important new tool to monitor when, where, and how soil microbial populations become established as rhizosphere communities. [ABSTRACT FROM AUTHOR]

Trichoderma asperellum strain 6S-2 with biocontrol effects and potential growth-promoting properties was made into a fungal fertilizer for the prevention of apple replant disease (ARD). 6S-2 fertilizer not only promoted the growth of Malus hupehensis Rehd seedlings in greenhouse and pot experiments, but also increased the branch elongation growth of young apple trees. The soil microbial community structure changed significantly after the application of 6S-2 fertilizer: the relative abundance of Trichoderma increased significantly, the relative abundance of Fusarium (especially the gene copy numbers of four Fusarium species) and Cryptococcus decreased, and the relative abundance of Bacillus and Streptomyces increased. The bacteria/fungi and soil enzyme activities increased significantly after the application of 6S-2 fertilizer. The relative contents of alkenes, ethyl ethers, and citrullines increased in root exudates of M. hupehensis Rehd treated with 6S-2 fertilizer and were positively correlated with the abundance of Trichoderma. The relative contents of aldehydes, nitriles, and naphthalenes decreased, and they were positively correlated with the relative abundance of Fusarium. In addition, levels of ammonium nitrogen (NH4-N), nitrate nitrogen (NO3-N), available phosphorus (AP), available potassium (AK), organic matter (SOM), and pH in rhizosphere soil were also significantly related to changes in the microbial community structure. In summary, the application of 6S-2 fertilizer was effective in alleviating some aspects of ARD by promoting plant growth and optimizing the soil microbial community structure. [ABSTRACT FROM AUTHOR]

Belowground interactions of plants with other organisms in the rhizosphere rely on extensive small-molecule communication. Chemical signals released from host plant roots ensure the development of beneficial arbuscular mycorrhizal (AM) fungi which in turn modulate host plant growth and stress tolerance. However, parasitic plants have adopted the capacity to sense the same signaling molecules and to trigger their own seed germination in the immediate vicinity of host roots. The contribution of AM fungi and parasitic plants to the regulation of phytohormone levels in host plant roots and root exudates remains largely obscure. Here, we studied the hormonome in the model system comprising tobacco as a host plant, Phelipanche spp. as a holoparasitic plant, and the AM fungus Rhizophagus irregularis. Co-cultivation of tobacco with broomrape and AM fungi alone or in combination led to characteristic changes in the levels of endogenous and exuded abscisic acid, indole-3-acetic acid, cytokinins, salicylic acid, and orobanchol-type strigolactones. The hormonal content in exudates of broomrape-infested mycorrhizal roots resembled that in exudates of infested non-mycorrhizal roots and differed from that observed in exudates of non-infested mycorrhizal roots. Moreover, we observed a significant reduction in AM colonization of infested tobacco plants, pointing to a dominant role of the holoparasite within the tripartite system. [ABSTRACT FROM AUTHOR]

Soil-borne pathogens can severely limit plant productivity. Induced defense responses are plant strategies to counteract pathogen-related damage and yield loss. In this study, we hypothesized that benzoic acid and lettucenin A are involved as defense compounds against Rhizoctonia solani and Olpidium virulentus in lettuce. To address this hypothesis, we conducted growth chamber experiments using hydroponics, peat culture substrate and soil culture in pots and minirhizotrons. Benzoic acid was identified as root exudate released from lettuce plants upon pathogen infection, with pre-accumulation of benzoic acid esters in the root tissue. The amounts were sufficient to inhibit hyphal growth of R. solani in vitro (30%), to mitigate growth retardation (51%) and damage of fine roots (130%) in lettuce plants caused by R. solani, but were not able to overcome plant growth suppression induced by Olpidium infection. Additionally, lettucenin A was identified as major phytoalexin, with local accumulation in affected plant tissues upon infection with pathogens or chemical elicitation (CuSO4) and detected in trace amounts in root exudates. The results suggest a two-stage defense mechanism with pathogen-induced benzoic acid exudation initially located in the rhizosphere followed by accumulation of lettucenin A locally restricted to affected root and leaf tissues. [ABSTRACT FROM AUTHOR]

In this study, the short-term effects of NaCl stress on the free amino acid content and composition of root exudates of Phragmites australis were evaluated. Nineteen amino acid types were detected in all samples. The results indicated that NaCl significantly influenced the total amino acid (TotAA) content. The TotAA content at 6‰ salinity (1098.79 μM g−1 DW) was up to 24 times higher than that in the control group (45.97 μM g−1 DW) but decreased to 106.32 μM g−1 DW at 6‰ salinity in the first hour. The stress period also significantly affected the TotAA content. After 4 h of stress, the TotAA content of the control and 1‰ salinity groups increased by approximately 30- and 14-fold, and those of the 3‰ and 6‰ groups decreased to 60% and 37%, respectively. The increase in TotAA content was primarily caused by the increase in proline content; the proportion of proline accounted for 58.05% of the TotAA content at 3‰ salinity level in 2 h. Most amino acids showed a significant positive correlation with each other, but proline and methionine showed a different trend. Therefore, the proline level is a useful indicator of salt stress in Phragmites australis, especially in saltwater wetlands. [ABSTRACT FROM AUTHOR]