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• A significant decrease in gene expression of adhesion-deficient V. harveyi. • fliA , fliR , and flrB were responsible for flagellation and silenced via RNAi. • fliA , fliR , and flrB have important roles in the adhesion of V. harveyi. • fliA , fliR , flrB regulate bacterial adhesion by affecting its motility, biofilm formation. • fliA , fliR , flrB regulate adhesion ability of V. harveyi in different environments. Bacteria adhesion to fish mucus is a crucial virulence mechanism. As the initial step of bacterial infection, adhesion is impacted by bacterial motility and environmental conditions. However, its molecular mechanism is yet unclear. In this study, a significant decrease in gene expression of adhesion-deficient Vibrio harveyi was observed when the bacteria were subjected by Cu2+(50 mg/L), Pb2+(100 mg/L), Hg2+(25 mg/L), and Zn2+(50 mg/L). The genes fliA , fliR , and flrB were responsible for flagellation; being crucial for adhesion, these genes were identified and silenced via RNAi. After silencing of these genes by RNAi technology, the ability of adhesion, biofilm formation, motility, and flagella synthesis of V. harveyi were considerably reduced. Compared with the control group, it was observed that the expression levels of fliS , fliD , flgH , and flrC were significant down-regulated in fliR -RNAi, flrB -RNAi, and fliA -RNAi. This data indicates that the expression levels of most virulence genes are affected by fliA , fliR , and flrB. Also, the expression of fliA , fliR , and flrB can be influenced by the salinity, temperature, and pH. The results show that: (1) fliA , fliR , and flrB have important roles in the adhesion of V. harveyi ; (2) fliA , fliR , and flrB can regulate bacterial adhesion by affecting its motility, and biofilm formation; (3) fliA , fliR , and flrB can regulate adhesion ability of V. harveyi in different environments. [ABSTRACT FROM AUTHOR]

As an important pathogen in aquaculture, Pseudomonas plecoglossicida has caused heavy losses. The expression of an ABC transporter gene- L321_23611 of P. plecoglossicida at 18 °C was found significant higher than those at 28 °C by RNA-seq and qRT-PCR. RNAi significantly reduced the content of L321_ 23611 mRNA in P. plecoglossicida with a maximal decrease of 89.2%. Compared with the wild type strain, the infection of L321_23611- RNAi strain resulted in the reduction in mortality and the onset time delay of a kind of marine teleosts, Epinephelus coioides. The results of dual RNA-seq showed that the RNAi of L321_23611 resulted in a significant change in both pathogen and host transcriptome in the spleens of infected E. coioides. The result of GO and KEGG analysis from dual RNA-seq data showed both host genes of chemokine signaling pathway, coagulation and complement system, hematopoietic cell lineage pathway as well as hemoglobin complex GO term and pathogenic genes of bacterial-type flagellum-dependent cell mortality GO term and flagellar assembly, biosynthesis of amino acids and lysine biosynthesis systems pathways were mainly affected by L321_23611 gene of P. plecoglossicida. The results indicated that: 1. ABC transporter gene- L321_23611 was a virulent gene of P. plecoglossicida. 2. Both the activation of the host immune pathways and depression of pathogenic virulence-related pathways facilitated E. coioides to remove L321_23611 -RNAi strain than the wild type strain of P. plecoglossicida. • RNAi significantly reduced the content of L321_ 23611 mRNA of P. plecoglossicida. • RNAi of L321_23611 reduced the pathogenicity of P. plecoglossicida to E. coioides. • RNAi of L321_23611 significantly up-regulated host immune pathways. • RNAi of L321_23611 down-regulated some pathogenic genes of P. plecoglossicida. [ABSTRACT FROM AUTHOR]

Aeromonas hydrophila infections are common in aquaculture. Our previous studies found that the A. hydrophila B11 strain can survive in fish macrophages for at least 24 h and the two‐component system EnvZ/OmpR may be involved in intracellular survival. To reveal the role and mechanism of the two‐component system EnvZ/OmpR in intracellular survival of A. hydrophila, the genes of envZ/ompR were silenced by shRNAi. The results showed that the survival rates of the envZ‐RNAi and ompR‐RNAi strains were only 2.05% and 3.75%, respectively, which were decreased by 91% and 83.6% compared with that of the wild‐type strain. The escape ability of envZ‐RNAi and ompR‐RNAi was also decreased by 51.4% and 19.7%, respectively. The comparative transcriptome analysis revealed that the functional genes directly related to bacterial intracellular survival mainly included the genes related to anti‐stress capacity, and the genes related to Zn2+ and Mg2+ transport. Further research confirmed that two‐component system EnvZ/OmpR can regulate the expression of the important molecular chaperones, such as groEL, htpG, dnaK, clpB and grpE. The expression of these molecular chaperones in wild‐type strain was up‐regulated with the increase in H2O2 concentrations, while the expression of these molecular chaperones in silent strains did not change significantly. Cells that phagocytosed wild‐type strain had higher ROS content than cells that phagocytosed silent strains. Two‐component system EnvZ/OmpR could also regulate zinc transporter (znuA, znuB, znuC) and zinc efflux protein (zntA) to maintain zinc homeostasis in cells, thus affecting the ability of bacteria to survive in phagocytes. Moreover, two‐component system EnvZ/OmpR could affect the growth and intracellular survival of A. hydrophila by regulating the expression of MgtA, MgtC and MgtE and participating in bacterial Mg2+ homeostasis in fish macrophages. [ABSTRACT FROM AUTHOR]

As an important pathogen in aquaculture, Pseudomonas plecoglossicida has caused heavy losses. It was determined with RNA-seq that the expression of a LysR-type transcriptional regulator gene (L321_20267) of P. plecoglossicida at 18 °C was significantly higher than that at 28 °C, which was verified by quantitative real-time PCR (qRT-PCR). RNAi significantly reduced the content of L321_ 20267 mRNA in P. plecoglossicida , with a maximal decrease of 90.63%. Compared with the wild-type strain, infection with the L321_20267- RNAi strain resulted in a 50% reduction in mortality and an onset time delay of Epinephelus coioides , as well as alleviation of the symptoms in E. coioides spleens. Compared with the wild-type strain of P. plecoglossicida , the L321_20267- RNAi strain resulted in a significant change in the spleen transcriptome of infected E. coioides. The results of GO and KEGG analysis showed that genes of serine hydrolase activity, the antigen processing and presentation pathway, the B cell receptor signalling pathway and the chemokine signalling pathway were most affected by the L321_20267 gene of P. plecoglossicida. Meanwhile, the immune genes were related to different numbers of miRNAs and lncRNAs, and some miRNAs were related to more than one gene. The results indicated that 1. L321_20267 is a virulence gene of P. plecoglossicida ; 2. the upregulation of the immune pathways facilitated E. coioides to remove the L321_20267 -RNAi strain compared with the wild-type strain of P. plecoglossicida ; and 3. the immune genes were regulated by miRNA and lncRNA in a complex manner. • The content of L321_ 20267 mRNA of P. plecoglossicida was significantly reduced by RNAi. • The pathogenicity of P. plecoglossicida to E. coioides was significantly reduced by RNAi of the L321_20267 gene. • RNAi of the L321_20267 gene significantly upregulated immune pathways in E. coioides infected with P. plecoglossicida. • The expression of immune genes was regulated by miRNA and lncRNA in a sophisticated manner. [ABSTRACT FROM AUTHOR]

Aquaculture suffers from a number of diseases caused by Aeromonas hydrophila. Biofilm can protect bacteria from antibiotic therapy. To identify the genes those play crucial roles in A. hydrophila biofilm formation, a library of mini-Tn10 transposon insertion mutants of A. hydrophila B11 has been constructed, and 10 mutants were subjected to biofilm formation assay. The biofilm formation ability of mutant (B188) was significantly decreased compared with B11. The DNA sequence flanking the mini-Tn10 transposon inserted showed that an ORF of approximately 576 bp of the mutant strain B188 was inserted. This ORF putatively displays the highest identity (92%) with the cytochrome c4 gene (cyt-c4) of A. hydrophila subsp. hydrophila ATCC 7966. Silencing cyt-c4 led to deficiencies in biofilm formation, adhesion, drug resistance and pathogenicity of A. hydrophila, which suggests that cyt-c4 plays crucial role in the biofilm formation and virulence mechanisms of A. hydrophila. ABBREVIATIONS: GEN: gentamycin; SDZ: sulfadiazine; AK: amikacin; P: penicillin; CFP: cefoperazone; LEV: levofloxacin; MH: minocycline; FFC: florfenicol; TE: tetracycline; AMP: ampicillin; KAN: kanamycin; STR: streptomycin; SXT: sulfamethoxazole/trimethoprim; DO: doxycycline; OT: Oxytetracycline. [ABSTRACT FROM AUTHOR]

The success of the pathogenic bacteria is partly attributable to their ability to thwart host innate immune responses, which includes resisting the antimicrobial functions of macrophages. And reactive oxygen species (ROS) is one of the most effective antimicrobial components of macrophages to kill invading bacteria. Our previous studies found that Aeromonas hydrophila can survive in fish macrophages, which suggested that this bacterium might take fish macrophages as their shelters to resist drug killings and other immune damage. But how A . hydrophila survive in host macrophages remains unknown. Since KatG has been reported to have not only catalase activity but also peroxidase and peroxynitritase activity, the amino acid sequence and protein structure of KatG was analyzed in this study, the function of KatG in A . hydrophila survival in and escape from host macrophages was also carried out. The bioinformatics analysis displayed that KatG of A . hydrophila B11 showed >93% homologous to that of KatG in other Aeromonas . KatG of A . hydrophila was stable silenced by shRNA and RT-qPCR confirmed the expression of KatG in KatG -RNAi was significantly reduced. The survival rate of intracellular KatG -RNAi decreased by 80% compared to that of the wild type strain B11, while the intracellular ROS level of the macrophages that phagocytosed KatG -RNAi increased 65.9% when compared to that of the macrophages phagocytosed wild-type strain. The immune escape rate of A . hydrophila decreased by 85% when the expression of KatG was inhibited. These results indicated that (1) The amino acid sequence and protein structure of KatG of A . hydrophila is conserved; (2) KatG helped A . hydrophila to survive in fish macrophages by eliminating the harm of intracellular H 2 O 2 and inhibiting intracellular ROS levels increased; (3) A small portion of intracellular A . hydrophila could escape from host macrophages for further infection, in this process KatG also played important role. [ABSTRACT FROM AUTHOR]