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The ubiquitin-proteasome system (UPS) plays crucial roles in cellular processes including plant growth, development, and stress responses. In this study, we report that a pair of E3 ubiquitin ligases, AvrPiz-t-interaction protein 6 (APIP6) and IPA1-interaction protein 1 (IPI1), intricately target early flowering3 (ELF3) paralogous proteins to control rice immunity and flowering. APIP6 forms homo-oligomers or hetero-oligomers with IPI1. Both proteins interact with OsELF3-2, promoting its degradation to positively control resistance against the rice blast fungus (Magnaporthe oryzae). Intriguingly, overexpression of IPI1 in Nipponbare caused significantly late-flowering phenotypes similar to the oself3-1 mutant. Except for late flowering, oself3-1 enhances resistance against M. oryzae. IPI1 also interacts with and promotes the degradation of OsELF3-1, a paralog of OsELF3-2. Notably, IPI1 and APIP6 synergistically modulate OsELF3s degradation, finely tuning blast disease resistance by targeting OsELF3-2, while IPI1 controls both disease resistance and flowering by targeting OsELF3-1. This study unravels multiple functions for a pair of E3 ligases in rice. [Display omitted] • APIP6 forms homo-oligomers with itself and hetero-oligomers with IPI1 • Both APIP6 and IPI1 promote OsELF3-2 degradation to enhance rice immunity • IPI1 targets OsELF3-1 to enhance immunity but negatively controls flowering • APIP6/IPI1 hetero-oligomers facilitate the degradation of ELF3 proteins in rice The pair of E3 ubiquitin ligases, APIP6 and IPI1, positively control rice immunity by promoting the degradation of OsELF3-2, while IPI1 delays flowering by destabilizing OsELF3-1. By forming hetero-oligomers, APIP6 and IPI1 synergistically control ELF3-mediated development and immunity in rice. [ABSTRACT FROM AUTHOR]

Immunity and flowering are energy-consuming processes. However, the mechanism underlying the balance between immunity and flowering remains to be elucidated. Here, we report that the E3 ligase ideal plant architecture 1 interactor 1 (IPI1) controls rice immunity and flowering via two different pathways, one dependent on and another independent of its E3 ligase activity. We found that IPI1, a RING-finger E3 ligase, interacts with another E3 ligase, AvrPiz-t-interacting protein 6 (APIP6), and protects APIP6 from degradation by preventing APIP6's self-ubiquitination. Stabilization of APIP6 by IPI1 requires no IPI1 E3 ligase activity and leads to degradation of APIP6 substrates via the ubiquitin-proteasome system (UPS). Meanwhile, IPI1 directly ubiquitinates OsELF3-1 and OsELF3-2, two homologs of EARLY FLOWERING3 (ELF3), targeting them for degradation via the 26S proteasome. IPI1 knockout plants display early flowering but compromised resistance to rice blast. Thus, IPI1 balances rice immunity and flowering via both E3 ligase-dependent and -independent pathways. [Display omitted] • IPI1 functions dependent on or independent of its E3 ligase activity • IPI1 protects APIP6 from degradation, independent of its E3 ligase activity • IPI1 promotes the degradation of OsELF3-1/OsELF3-2 dependent on its E3 ligase activity • IPI1 balances rice immunity and flowering Yi et al. demonstrate that the E3 ligase IPI1 inhibits flowering time by promoting the degradation of OsELF3-1, dependent on its E3 ligase activity, and enhances rice immunity by ubiquitinating OsELF3-2 and stabilizing APIP6, dependent and independent of its E3 ligase activity, respectively. [ABSTRACT FROM AUTHOR]

ABSTRACT Plants need to fine‐tune defense responses to maintain a robust but flexible host barrier to various pathogens. Helix‐loop‐helix/basic helix‐loop‐helix (HLH/bHLH) complexes play important roles in fine‐tuning plant development. However, the function of these genes in plant immunity and how they are regulated remain obscure. Here, we identified an atypical bHLH transcription factor, Oryza sativa (Os)HLH46, that interacts with rice receptor‐like cytoplasmic kinase (RLCK) Os BRASSINOSTEROID‐SIGNALING KINASE1‐2 (OsBSK1‐2), which plays a key role in rice blast resistance. OsBSK1‐2 stabilized OsHLH46 both in vivo and in vitro. In addition, OsHLH46 positively regulates rice blast resistance, which depends on OsBSK1‐2. OsHLH46 has no transcriptional activation activity and interacts with a typical bHLH protein, OsbHLH6, which negatively regulates rice blast resistance. OsbHLH6 binds to the promoter of OsWRKY45 and inhibits its expression, while OsHLH46 suppresses the function of OsbHLH6 by blocking its DNA binding and transcriptional inhibition of OsWRKY45. Consistent with these findings, OsWRKY45 was up‐regulated in OsHLH46‐overexpressing plants. In addition, the oshlh46 mutant overexpressing OsbHLH6 is more susceptible to Magnaporthe oryzae than is the wild type, suggesting that OsHLH46 suppresses OsbHLH6‐mediated rice blast resistance. Our results not only demonstrated that OsBSK1‐2 regulates rice blast resistance via the OsHLH46/OsbHLH6 complex, but also uncovered a new mechanism for plants to fine‐tune plant immunity by regulating the HLH/bHLH complex via RLCKs. [ABSTRACT FROM AUTHOR]

Summary Terpene synthases (TPSs) are key enzymes in terpenoids synthesis of plants and play crucial roles in regulating plant defence against pests and diseases. Here, we report the functional characterization of OsTPS19 and OsTPS20, which were upregulated by the attack of brown planthopper (BPH). BPH female adults performed concentration‐dependent behavioural responses to (S)‐limonene showing preference behaviour at low concentrations and avoidance behaviour at high concentrations. Overexpression lines of OsTPS19 and OsTPS20, which emitted higher amounts of the monoterpene (S)‐limonene, decreased the hatching rate of BPH eggs, reduced the lesion length of sheath blight caused by Rhizoctonia solani and bacterial blight caused by Xanthomonas oryzae. While knockout lines of OsTPS19 and OsTPS20, which emitted lower amounts of (S)‐limonene, were more susceptible to these pathogens. Overexpression of OsTPS19 and OsTPS20 in rice plants had adverse effects on the incidence of BPH, rice blast, and sheath blight in the field and had no significant impacts on rice yield traits. OsTPS19 and OsTPS20 were found to be involved in fine‐tuning the emission of (S)‐limonene in rice plants and play an important role in defence against both BPH and rice pathogens. [ABSTRACT FROM AUTHOR]

The virulence of Magnaporthe oryzae largely hinges on its secretory effectors. Therefore, identification and thorough understanding of the effector functionality is crucial for unravelling the pathogenicity of the pathogen. In the present study, we employed a modified computational pipeline with deep machine learning techniques with an integration of Magnaporthe effector reference datasets (MOED) that predicted 434 M. oryzae candidate secretory effector proteins (MoCSEPs) from the genomic data. The reliability of the modified CSEP prediction workflow through utilization of precise parametric filtering is considered valid as it predicted 100 functional effectors (97.08%) out of 103 previously identified effector proteins within the Magnaporthe genus. Insights into secretion patterns and subcellular localization elucidated the role of these proteins in host cell recognition. Furthermore, structural classification of MoCSEPs, based on conserved motifs, combined with an exploration of their biological functions, revealed their significance in host adaptability and localization. Experimental validation done through examining expression of the MoCSEPs revealed varied secretion patterns in the resistant (40 expressed) and susceptible (92 expressed) rice cultivars at different time intervals after pathogen inoculation owing to different degrees of resistance by the host cultivars. The present work thus provides the strategic model of canonical parametric evaluation within the MOED and deepens the understanding on the role of secretory proteins of M. oryzae in establishing successful parasitic infection in rice. The predicted MoCSEPs could be used as biomarkers for disease diagnosis and tracking evolutionary shifts in M. oryzae. [ABSTRACT FROM AUTHOR]

[Objective] To utilize existing resources to create new excellent restoring and sterile lines, and to breed new hybrid rice varieties with high yield, quality and disease resistance. [Method] The high-yielding, large panicle and strong stem (HR1128/Chenghui 727) F3 selected line was used as the female parent and the early maturing and blast resistant Wushan silk seedling was used as the male parent. A new restoring line Zhunongzhan 110 with strong restoring ability, good combining ability and resistance to rice blast was selected through multiple generations of selection and cross testing with multiple three line sterile lines. In the multi-point comparison experiment, the combination with Zhu 99A showed the characteristics of high yield, high quality, disease resistance and lodging resistance, so it was named Zhuyou 110. In 2020-2021, Zhuyou 110 participated in regional trials of late maturing medium Indica rice in the middle and lower reaches of the Yangtze River and photosensitive late Indica rice in southern China. [Result] In the regional trial of late maturing medium Indica rice in the middle and lower reaches of the Yangtze River, the average yield of Zhuyou 110 in the two-year regional trial was 9.70 t/ hm², enhanced by 6.6% compared with CK. In the 2021 production test, the average yield was 10.13 t/ hm², enhanced by 5.9% compared with CK. It showed high yield, lodging resistance and moderate resistance to rice blast, which reached the second level of the Quality of Edible Rice Varieties (NY/ T 593— 2013) standard in the agricultural industry, approved by the National Crop Variety Approval Committee (Authorization code:Guoshendao 20220021). [Conclusion] Zhuyou 110 had the advantages of high yield, high quality, lodging resistance and moderate resistance to rice blast, which was suitable for planting one mid-season rice in the middle and lower reaches of the Yangtze River and double late-season rice in the southern rice region. [ABSTRACT FROM AUTHOR]

Background: The identification of spotted leaf 50 (spl50), a novel lesion mimic mutant (LMM) in rice, provides critical insights into the mechanisms underlying programmed cell death (PCD) and innate immunity in plants. Results: Based on ethyl methane sulfonate (EMS)-induced mutagenesis, the spl50 mutant mimics hypersensitive responses in the absence of pathogen by displaying spontaneous necrotic lesions after the tillering phase. SPL50, an ARM repeat protein essential for controlling reactive oxygen species (ROS) metabolism and boosting resistance to blast disease, was identified by map-based cloning techniques. This work also demonstrates the detrimental effects of spl50 on photosynthetic efficiency and chloroplast development. The crucial significance of SPL50 in cellular signaling and stress response is shown by its localization to the cytoplasm and constitutive expression in various plant tissues. In light of growing concerns regarding global food security, this study highlights the pivotal role of SPL50 in regulating programmed cell death (PCD) and enhancing the immune response in plants, contributing to strategies for improving crop disease resistance. Conclusions: The novel identification of the SPL50 gene in rice, encoding an ARM repeat protein, reveals its pivotal role in regulating PCD and innate immune responses independently of pathogen attack. [ABSTRACT FROM AUTHOR]

The rice blast fungus Magnaporthe oryzae poses a significant challenge to maintaining rice production. Developing rice varieties with resistance to this disease is crucial for its effective control, To understand the genetic variability of blast isolates collected between 2015 and 2017, the 27 monogenic rice lines that carry specific resistance genes were used to evaluate blast disease reactions. Based on criteria such as viability, virulence, and reactions to resistance genes, 20 blast isolates were selected as representative strains. To identify novel resistance genes, a quantitative trait locus analysis was carried out utilizing a mixture of the 20 representative rice blast isolates and a rice population derived from crossing the blast-resistant cultivar 'Cheongcheong' with the blast-susceptible cultivar 'Nagdong'. This analysis revealed a significant locus, RM1227-RM1261 on chromosome 12, that is associated with rice blast resistance. Within this locus, 12 disease resistance-associated protein genes were identified. Among them, OsDRq12, a member of the nucleotide-binding, leucine-rich repeat disease resistance family, was chosen as the target gene for additional computational investigation. The findings of this study have significant implications for enhancing rice production and ensuring food security by controlling rice blast and developing resistant rice cultivars. [ABSTRACT FROM AUTHOR]

The flowering period of rice significantly impacts variety adaptability and yield formation. Properly shortening the reproductive period of rice varieties can expand their ecological range without significant yield reduction. Targeted genome editing, like CRISPR/Cas9, is an ideal tool to fine-tune rice growth stages and boost yield synergistically. In this study, we developed a CRISPR/Cas9-mediated multiplex genome-editing vector containing five genes related to three traits, Hd2, Ghd7, and DTH8 (flowering-stage genes), along with the recessive rice blast resistance gene Pi21 and the aromatic gene BADH2. This vector was introduced into the high-quality japonica rice variety in Zhejiang province, Jiahe212 (JH212), resulting in 34 T0 plants with various effective mutations. Among the 17 mutant T1 lines, several displayed diverse flowering dates, but most exhibited undesirable agronomic traits. Notably, three homozygous mutant lines (JH-C15, JH-C18, and JH-C31) showed slightly earlier flowering dates without significant differences in yield-related traits compared to JH212. Through special Hyg and Cas marker selection of T2 plants, we identified seven, six, and two fragrant glutinous plants devoid of transgenic components. These single plants will serve as sib lines of JH212 and potential resources for breeding applications, including maintenance lines for indica–japonica interspecific three-line hybrid rice. In summary, our research lays the foundation for the creation of short-growth-period CMS (cytoplasmic male sterility, CMS) lines, and also provides materials and a theoretical basis for indica–japonica interspecific hybrid rice breeding with wider adaptability. [ABSTRACT FROM AUTHOR]

Rice blast caused by the pathogenic fungus Magnaporthe oryzae poses a significant threat to rice cultivation. The identification of robust resistance germplasm is crucial for breeding resistant varieties. In this study, we employed functional molecular markers for 10 rice blast resistance genes, namely Pi1, Pi2, Pi5, Pi9, Pia, Pid2, Pid3, Pigm, Pikh, and Pita, to assess blast resistance across 91 indica rice backbone varieties in South China. The results showed a spectrum of resistance levels ranging from highly resistant (HR) to highly susceptible (HS), with corresponding frequencies of 0, 19, 40, 27, 5, and 0, respectively. Yearly correlations in blast resistance genes among the 91 key indica rice progenitors revealed Pid2 (60.44%), Pia (50.55%), Pita (45.05%), Pi2 (32.97%), Pikh (4.4%), Pigm (2.2%), Pi9 (2.2%), and Pi1 (1.1%). Significant variations were observed in the distribution frequencies of these 10 resistance genes among these progenitors across different provinces. Furthermore, as the number of aggregated resistance genes increased, parental resistance levels correspondingly improved, though the efficacy of different gene combinations varied significantly. This study provides the initial steps toward strategically distributing varieties of resistant indica rice genotypes across South China. [ABSTRACT FROM AUTHOR]

In this paper, we investigated the monitoring and characterization of the pest Magnaporthe oryzae, known as rice blast, in the Bomba rice variety at the Albufera Natural Park, located in Valencia, Spain during the 2022 and 2023 seasons. Using reflectance data from different Sentinel-2 satellite bands, various vegetative indices were calculated for each year. Significant differences in reflectance in the visible (B4), infrared (B8), red-edge (B6 and B7), and SWIR (B11) bands were detected between healthy and unhealthy fields. Additionally, variations were observed in the vegetation indices, with RVI and IRECI standing out for their higher accuracy in identifying blast-affected plots compared to NDVI and NDRE. Early differences in band values, vegetative indices, and spectral signatures were observed between the unhealthy and healthy plots, allowing for the anticipation of control treatments, whose effectiveness relies on timely intervention. [ABSTRACT FROM AUTHOR]

ABSTRACT Magnaporthe oryzae (M. oryzae) is a devastating hemibiotrophic pathogen. Its biotrophic invasive hyphae (IH) are enclosed in the extrainvasive hyphal membrane produced by plant cells, thus generating a front line of the battlefield between the pathogen and the host plants. In plants, defense‐related complexes such as proteins, callose‐rich materials and vesicles, are directionally secreted to this interface to confer defense responses, but the underlying molecular mechanism is poorly understood. In this study, we found that a Myosin gene, Myosin A1 (OsMYA1), contributed to rice defense. The OsMYA1 knockout mutant exhibited decreased resistance to M. oryzae infection. OsMYA1 localizes to the actin cytoskeleton and surrounds the IH of M. oryzae. OsMYA1 interacts with an exocyst subunit, OsExo70H1, and regulates its accumulation at the plasma membrane (PM) and pathogen–plant interface. Furthermore, OsExo70H1 interacted with the rice syntaxin of the plants121 protein (OsSyp121), and the distribution of OsSyp121 to the PM or the pathogen–plant interface was disrupted in both the OsMYA1 and OsExo70H1 mutants. Overall, these results not only reveal a new function of OsMYA1 in rice blast resistance, but also uncover a molecular mechanism by which plants regulate defense against M. oryzae by OsMYA1‐initiated vesicle secretory pathway, which originates from the actin cytoskeleton to the PM. [ABSTRACT FROM AUTHOR]

Kasugamycin (KSM), an aminoglycoside antibiotic, has been widely used as a natural fungicide to control plant diseases, particularly for managing rice blast. However, its uptake mechanism and transport in rice remain to be explored. In this article, rice seedlings were treated by the foliar spraying method, and the content of KSM in rice leaves, stems and roots under different treatments was detected by high‐performance liquid chromatography tandem mass spectrometry (HPLC‐MS/MS), respectively. Results showed that leaf‐applied KSM could be transported to the phloem and migrate to roots and stems after uptake by leaves. Concentration, temperature and pH had significant effects on the uptake of KSM. Compared with the control, the competitive inhibitors d‐glucose and phlorizin both inhibited the uptake of KSM, demonstrating that sugar transporter proteins were involved in the uptake process. The energy inhibitors dinitrophenol (DNP) and carbonyl cyanide chlorophenylhydrazone (CCCP) also significantly inhibited the uptake of KSM, indicating that the uptake of KSM required energy consumption. Thus, the uptake of KSM by rice was an active process involving sugar transporter proteins, and it could migrate downward through the phloem. This study contributes to the promotion of the scientific application of antibiotics and the biological control of crop diseases. It will also provide a theoretical basis for the development of root‐targeted pesticides and transport pesticides with phloem mobility. [ABSTRACT FROM AUTHOR]

ABSTRACT NAC transcription factors (TFs) are pivotal in plant immunity against diverse pathogens. Here, we report the functional and regulatory network of MNAC3, a novel NAC TF, in rice immunity. MNAC3, a transcriptional activator, negatively modulates rice immunity against blast and bacterial leaf blight diseases and pathogen‐associated molecular pattern (PAMP)‐triggered immune responses. MNAC3 binds to a CACG cis‐element and activates the transcription of immune‐negative target genes OsINO80, OsJAZ10, and OsJAZ11. The negative function of MNAC3 in rice immunity depends on its transcription of downstream genes such as OsINO80 and OsJAZ10. MNAC3 interacts with immunity‐related OsPP2C41 (a protein phosphatase), ONAC066 (a NAC TF), and OsDjA6 (a DnaJ chaperone). ONAC066 and OsPP2C41 attenuate MNAC3 transcriptional activity, while OsDjA6 promotes it. Phosphorylation of MNAC3 at S163 is critical for its negative functions in rice immunity. OsPP2C41, which plays positive roles in rice blast resistance and chitin‐triggered immune responses, dephosphorylates MNAC3, suppressing its transcriptional activity on the target genes OsINO80, OsJAZ10, and OsJAZ11 and promoting the translocation of MNAC3 from nucleus to cytoplasm. These results establish a MNAC3‐centered regulatory network in which OsPP2C41 dephosphorylates MNAC3, attenuating its transcriptional activity on downstream immune‐negative target genes in rice. Together, these findings deepen our understanding of molecular mechanisms in rice immunity and offer a novel strategy for genetic improvement of rice disease resistance. [ABSTRACT FROM AUTHOR]

Through backcrossing and marker-assisted selection, gene Pi9 for resistance to rice blast was introduced into the water-saving and drought-resistant rice variety, Hanhui 3. The genetic background identity between Hanhui 8200 and Hanhui 3 was 91.4%. The drought resistance and drought avoidance abilities of Hanhui 8200 were equivalent to those of Hanhui 3. The resistance to rice blast was improved from grade 7 to grade 1. The rice quality of Hanhui 8200 meets the Ministry of Agriculture's grade 3 rice standards. The two-line and three-line hybrids formulated with Hanhui 8200 have high yield potential. Among them, the three-line hybrid Hanyou 8200 (Approval No.: Evaluated Rice 20210073), formulated with Huhan 7A, passed the Hubei Provincial approval in 2021, and the two-line hybrid Hanyouliangyou 8200 (Approval No.: Nationally Validated Rice 20210448), formulated with Huhan 82S, passed the national variety approval in 2021. Both hybrids demonstrated strong resistance to rice blast, moderate resistance to bacterial leaf blight, strong drought resistance, high quality, and high yield. [ABSTRACT FROM AUTHOR]

Nucleotide-binding and leucine-rich repeat receptors (NLRs) are the most important and largest class of immune receptors in plants. The Pi36 gene encodes a canonical CC-NBS-LRR protein that confers resistance to rice blast fungal infections. Here, we show that the CC domain of Pi36 plays a role in cell death induction. Furthermore, self-association is required for the CC domain-mediated cell death, and the self-association ability is correlated with the cell death level. In addition, the NB-ARC domain may suppress the activity of the CC domain through intramolecular interaction. The mutations D440G next to the RNBS-D motif and D503V in the MHD motif autoactivated Pi36, but the mutation K212 in the P-loop motif inhibited this autoactivation, indicating that nucleotide binding of the NB-ARC domain is essential for Pi36 activation. We also found that the LRR domain is required for D503V- and D440G-mediated Pi36 autoactivation. Interestingly, several mutations in the CC domain compromised the CC domain-mediated cell death without affecting the D440G- or D503V-mediated Pi36 autoactivation. The autoactivate Pi36 variants exhibited stronger self-associations than the inactive variants. Taken together, we speculated that the CC domain of Pi36 executes cell death activities, whereas the NB-ARC domain suppressed CC-mediated cell death via intermolecular interaction. The NB-ARC domain releases its suppression of the CC domain and strengthens the self-association of Pi36 to support the CC domain, possibly through nucleotide exchange. [ABSTRACT FROM AUTHOR]

Transcription factors play critical roles in diverse biological processes in fungi. XlnR, identified as a transcriptional activator that regulates the expression of the extracellular xylanase genes in fungi, has not been extensively studied for its function in fungal development and pathogenicity in rice false smut fungus Ustilaginoidea virens. In this study, we characterized UvXlnR in U. virens and established that the full-length. N-terminal, and C-terminal forms have the ability to activate transcription. The study further demonstrated that UvXlnR plays crucial roles in various aspects of U. virens biology. Deletion of UvXlnR affected growth, conidiation, and stress response. UvXlnR mutants also exhibited reduced pathogenicity, which could be partially attributed to the reduced expression of xylanolytic genes and extracellular xylanase activity of U. virens during the infection process. Our results indicate that UvXlnR is involved in regulating growth, conidiation, stress response, and pathogenicity. [ABSTRACT FROM AUTHOR]

Magnaporthe oryzae is one of the most important fungal pathogens of rice. Chitin and avirulent strains can induce two layers of immunity response, pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) and effector-triggered immunity (ETI), in rice with cognate R genes. However, little is known about the assembly of the rice microbiome induced by PTI and ETI in rice. In this study, we investigate the impact of continuous treatment of the avirulent M. oryzae strain with AvrPi9 and chitin on the bacterial endophytic community of rice varieties harboring resistant gene Pi9 and their antagonistic activity against rice blast fungus. Analysis of the 16S rRNA showed a significant increase in the diversity and microbial co-occurrence network complexity and the number of beneficial taxa—Bacillus, Pseudomonas, Microbacterium, and Stenotrophomonas spp.—following the chitin and avirulent strain treatments. The antifungal assay with bacterial endophytes recovered from the leaves showed few bacteria with antagonistic potential in rice treated with avirulent strains, suggesting that the sequential treatment of the avirulent strain decreased the antagonistic bacteria against M. oryzae. Moreover, we identified Bacillus safensis Ch_66 and Bacillus altitudinis Nc_68 with overall antagonistic activities in vivo and in vitro. Our findings provide a novel insight into rice microbiome assembly in response to different innate immunity reactions. [ABSTRACT FROM AUTHOR]

To better understand RNA-binding proteins in rice, a comprehensive investigation was conducted on the RRM1 gene family of rice. It encompassed genome-wide identification and exploration of its role in rice blast resistance. The physicochemical properties of the rice OsRRM1 gene family were analyzed. There genes were also analyzed for their conserved domains, motifs, location information, gene structure, phylogenetic trees, collinearity, and cis-acting elements. Furthermore, alterations in the expression patterns of selected OsRRM1 genes were assessed using quantitative real-time PCR (qRT-PCR). A total of 212 members of the OsRRM1 gene family were identified, which were dispersed across 12 chromosomes. These genes all exhibit multiple exons and introns, all of which encompass the conserved RRM1 domain and share analogous motifs. This observation suggests a high degree of conservation within the encoded sequence domain of these genes. Phylogenetic analysis revealed the existence of five subfamilies within the OsRRM1 gene family. Furthermore, investigation of the promoter region identified cis-regulatory elements that are involved in nucleic acid binding and interaction with multiple transcription factors. By employing GO and KEGG analyses, four RRM1 genes were tentatively identified as crucial contributors to plant immunity, while the RRM1 gene family was also found to have a significant involvement in the complex of alternative splicing. The qRT-PCR results revealed distinct temporal changes in the expression patterns of OsRRM1 genes following rice blast infection. Additionally, gene expression analysis indicates that the majority of OsRRM1 genes exhibited constitutive expressions. These findings enrich our understanding of the OsRRM1 gene family. They also provide a foundation for further research on immune mechanisms rice and the management of rice blast. [ABSTRACT FROM AUTHOR]

BRRI31R is one of the Bangladesh's most promising restorer lines due to its abundant pollen producing capacity, strong restoring ability, good combining ability, high outcrossing rate and genetically diverse from cytoplasmic male sterile (CMS) line. But the drawback of this line is that it is highly susceptible to bacterial blight (BB) disease of rice caused by Xanthomonas oryzae pv. oryzae. The present study highlighted the pyramiding of effective BB resistance genes (xa5, xa13 and Xa21) into the background of BRRI31R, through marker–assisted backcrossing (MABC). Backcross progenies were confirmed and advanced based on the foreground selection of target genes. Pyramided lines were used for pathogenicity test against five Bangladeshi Xanthomonas oryzae (BXo) races (BXo93, BXo220, BXo822, BXo826, BXo887) and confirmed the dominant fertility restore genes, Rf3 and Rf4 and further validated against SNP markers for more confirmation of target resistance genes. All pyramided restorer lines consisted of Xa4 (in built), xa5, xa13, Xa21, and Chalk5 with two fertility restorer genes, Rf3, Rf4. and these restorer lines showed intermediate amylose content (<25%). Restorer lines BRRI31R-MASP3 and BRRI31R-MASP4 showed high levels of resistance against five virulent BXo races and SNP genotyping revealed that these lines also contained a blast resistance gene Pita races. Gene pyramided restorer lines, BRRI31R-MASP3 and BRRI31R-MASP4 can directly be used as a male parent for the development of new BB resistant hybrid rice variety or could be used as a replacement of restorer line of BRRI hybrid dhan5 and 7 to enhance the quality of hybrid seeds as well as rice production in Bangladesh. [ABSTRACT FROM AUTHOR]

Ferroptosis is an iron-dependent cell death that was discovered recently. For beneficial microbes to establish mutualistic relationships with hosts, precisely controlled cell death in plant cells is necessary. However, whether ferroptosis is involved in the endophyte‒plant system is poorly understood. Here, we reported that endophytic Streptomyces hygroscopicus OsiSh-2, which established a sophisticated and beneficial interaction with host rice plants, caused ferroptotic cell death in rice characterized by ferroptosis- and immune-related markers. Treatments with ferroptosis inhibitors and inducers, different doses of OsiSh-2, and the siderophore synthesis-deficient mutant ΔcchH revealed that only moderate ferroptosis induced by endophytes is essential for the establishment of an optimal symbiont to enhance plant growth. Additionally, ferroptosis involved in a defence-primed state in rice, which contributed to improved resistance against rice blast disease. Overall, our study provides new insights into the mechanisms of endophyte‒plant interactions mediated by ferroptosis and suggests new directions for crop yield promotion. Ferroptosis is of great importance in plant immunity including microbe-plant interactions. Here, the authors unveil that a regulated ferroptosis process is involved in the mutualistic symbiosis and disease resistance of endophyte OsiSh-2 and host rice. [ABSTRACT FROM AUTHOR]

F‐box protein is a subunit of the SCF (SKP1‐CUL1‐F‐box protein) E3 ubiquitin ligase complex, which plays a critical role in regulating different pathways in plant immunity. In this study, we identified the rice (Oryza sativa) F‐box protein OsFBX156, which targets the heat shock protein 70 (OsHSP71.1) to regulate resistance to the rice blast fungus Magnaporthe oryzae. Overexpression of OsFBX156 or knockout of OsHSP71.1 in rice resulted in the elevation of pathogenesis‐related (PR) genes and an induction burst of reactive oxygen species (ROS) after flg22 and chitin treatments, thereby enhancing resistance to M. oryzae. Furthermore, OsFBX156 can promote the degradation of OsHSP71.1 through the 26S proteasome pathway. This study sheds lights on a novel mechanism wherein the F‐box protein OsFBX156 targets OsHSP71.1 for degradation to promote ROS production and PR gene expression, thereby positively regulating rice innate immunity. [ABSTRACT FROM AUTHOR]

‘Saebonghwang’ was developed as a mid-late ripening rice variety with good cultivation stability and yield in transplanting and under direct seeding cultivation. It was bred by backcrossing ‘Hopum’, which has excellent cultivation stability and adaptability to direct seeding, as a repeat parent, and ‘Hitomebore,’ a Japanese rice variety with excellent taste, as a donor. The heading date of ‘Saebonghwang’ was August 11 under ordinary planting, which is two days earlier than that of ‘Nampyeong’, and August 13 under wet-direct seeding cultivation, which is the same as that of ‘Dongan’. ‘Saebonghwang’ had a culm length of 74 cm under wet-direct seeding cultivation, which is larger than that of ‘Dongan’ (69 cm), and had good cultivation stability, including lodging resistance. ‘Saebonghwang’ is resistant to bacterial leaf blight and rice stripe virus and shows moderate resistance to rice blast. Furthermore, ‘Saebonghwang’ has better grain appearance, superior taste and better milling characteristics than ‘Nampyeong’. The yield of ‘Saebonghwang’ when cultivated under ordinary planting, wet-direct seeding, and double cropping was 5.65, 5.37, and 5.37 MT/ha, respectively. Under wet direct sowing by drone cultivation, ‘Saebonghwang’ showed good initial survival rate and cultivation stability. The yield was 4.49 MT/ha, slightly lower than that obtained under transplanted cultivation (5.03 MT/ha), but was not statistically different; therefore, ‘Saebonghwang’ was adjudged to be adaptable to drone wet-direct seeding. ‘Saebonghwang’ can be used in various ways to suit the working conditions of farms, increase farm work efficiency, and expand the area of wet direct-seeding cultivation [ABSTRACT FROM AUTHOR]

[Objective] The present paper aimed to explore the pathogenicity and dominant physiological groups and physiological races of Magnaporthe oryzae in Guangxi, analyze avirulence genes, find out the composition and distribution of physiological races and avirulence genes, providing reference for resistance breeding and variety promotion. [Method] Pathogenicity of 128 M. oryzae single spore isolates from 4 rice growing regions of southern Guangxi (Guinan), central Guangxi (Guizhong), northern Guangxi (Guibei) and alpine region were deter- mined by artificial spraying inoculation on the 7 unified identification of varieties in China and 26 near-isogenic lines (NILs) that contained only one resistance gene. (Result) Among the 128 rice blast strains, the proportion of strong pathogenic strains was 60.16%. The 128 M. oryzae strains could be divided into 7 groups and 26 physiological races, and the dominant group was ZB with a frequency of 69.53%. Dominant physiological races were ZB13 and ZB,, whose frequencies were 25.00% and 14.84%. Virulence frequency of the tested isolates ranged from 28.12% to 100.00%. Among them, the virulence frequency of the isolates group to resistance genes Pik, Pikm, Pil and Pi9 was lower, with frequencies of 28. 12%, 28.91%, 35.94% and 37.50%, respectively. Avirulence genes corresponding to the tested resistance genes were detected in the collected rice blast fungi, and 15 avirulence genes were detected in the four regions. Avirulence genes Aur-Pia (1), Aur-Pia(2), Aur-Pii, Aur-Pik, Aur-Pib, Aur-Pit, Aur-Pish (2), Aur-Pi3(1), Aur-Pi5 (1), Aur-Pil2(t) and Avr-Pi19(t) occurred at a frequency less than 20.00%. Most of isolates contained 5, 6, 7, 8, 10 avirulence genes with combination frequency of 19.53%, 11.72%, 11.72%, 15.63% and 10. 16% in the tested strains. [Conclusion] Rice blast fungi in Guangxi from 2021 have strong pathogenicity. The dominant physiological group is ZB and dominant physiological races are ZB13 and ZB9. Avirulence genes Aur-Pia (1), Avr-Pia (2), Aur-Pii, Aur-Pik, Aur-Pib, Aur-Pit, Avr-Pish (2), Aur-Pi3 (1), Aur-Pi5(1), Aur-Pil2(t) and Aur-Pil9(t) occurr at low frequency, which suggests that resistance genes corresponding to the avirulence genes should not be suitable for applying rice breeding and variety distribution in Guangxi. [ABSTRACT FROM AUTHOR]

Rice blast is a destructive fungal disease affecting rice plants at various growth stages, significantly threatening global yield stability. Development of resistant rice cultivars stands as a practical means of disease control. Generally, association mapping with a diversity panel powerfully identifies new alleles controlling trait of interest. On the other hand, utilization of a breeding panel has its advantage that can be directly applied in a breeding program. In this study, we conducted a genome-wide association study (GWAS) for blast resistance using 296 commercial rice cultivars with low population structure but large phenotypic diversity. We attempt to answer the genetic basis behind rice blast resistance among early maturing cultivars by subdividing the population based on its Heading date 1 (Hd1) functionality. Subpopulation-specific GWAS using the mixed linear model (MLM) based on blast nursery screening conducted in three years revealed a total of 26 significant signals, including three nucleotide-binding site leucine-rich repeat (NBS-LRR) genes (Os06g0286500, Os06g0286700, and Os06g0287500) located at Piz locus on chromosome 6, and one at the Pi-ta locus (Os12g0281300) on chromosome 12. Haplotype analysis revealed blast resistance associated with Piz locus was exclusively specific to Type 14 hd1 among japonica rice. Our findings provide valuable insights for breeding blast resistant rice and highlight the applicability of our elite cultivar panel to detect superior alleles associated with important agronomic traits. [ABSTRACT FROM AUTHOR]

The abundant genetic variation harbored by wild rice (Oryza rufipogon) has provided a reservoir of useful genes for rice breeding. However, the genome of wild rice has not yet been comprehensively assessed. Here, we report the haplotype-resolved gapless genome assembly and annotation of wild rice Y476. In addition, we develop two sets of chromosome segment substitution lines (CSSLs) using Y476 as the donor parent and cultivated rice as the recurrent parents. By analyzing the gapless reference genome and CSSL population, we identify 254 QTLs associated with agronomic traits, biotic and abiotic stresses. We clone a receptor-like kinase gene associated with rice blast resistance and confirm its wild rice allele improves rice blast resistance. Collectively, our study provides a haplotype-resolved gapless reference genome and demonstrates a highly efficient platform for gene identification from wild rice. Genetic variation present in wild rice is a reservoir of useful genes for rice breeding. Here, the authors report the haplotype-resolved gapless genome assembly of wild rice, the development of two sets of chromosome segment substitution lines, and the cloning of a blast resistance gene originated from wild rice. [ABSTRACT FROM AUTHOR]

Iron- and reactive oxygen species (ROS)-dependent ferroptosis occurs in plant cells. Ca2+ acts as a conserved key mediator to control plant immune responses. Here, we report a novel role of cytoplasmic Ca2+ influx regulating ferroptotic cell death in rice immunity using pharmacological approaches. High Ca2+ influx triggered iron-dependent ROS accumulation, lipid peroxidation, and subsequent hypersensitive response (HR) cell death in rice (Oryza sativa). During Magnaporthe oryzae infection, 14 different Ca2+ influx regulators altered Ca2+, ROS and Fe2+ accumulation, glutathione reductase (GR) expression, glutathione (GSH) depletion and lipid peroxidation, leading to ferroptotic cell death in rice. High Ca2+ levels inhibited the reduction of glutathione isulphide (GSSG) to GSH in vitro. Ca2+ chelation by ethylene glycol-bis (2-aminoethylether)-N, N, N', N'- tetra-acetic acid (EGTA) suppressed apoplastic Ca2+ influx in rice leaf sheaths during infection. Blocking apoplastic Ca2+ influx into the cytoplasm by Ca2+ chelation effectively suppressed Ca2+-mediated iron-dependent ROS accumulation and ferroptotic cell death. By contrast, acibenzolar-S-methyl (ASM), a plant defense activator, significantly enhanced Ca2+ influx, as well as ROS and iron accumulation to trigger ferroptotic cell death in rice. The cytoplasmic Ca2+ influx through calcium-permeable cation channels, including the putative resistosomes, could mediate iron- and ROS-dependent ferroptotic cell death under reduced GR expression levels in rice immune responses. [ABSTRACT FROM AUTHOR]

Rice blast, caused by the fungus Magnaporthe oryzae, and brown planthopper (BPH) infestation are two of the most destructive problems of rice production in China. The development of multi-resistant varieties is widely recognized as the most efficient and environmentally friendly approach to controlling crop diseases and pests. Functional molecular markers (FMMs) have been developed from functional variants in the genic region associated with trait variation, greatly enhancing the efficiency of identifying and pyramiding valuable genes in crop breeding. In this study, two FMMs and a multiplex PCR amplification system were developed for two major broad-spectrum BPH resistance genes, Bph6 and Bph9. With the assistance of FMMs in the multi-resistant rice restorer-line development pipeline, two lines (Huahui7713 and Huahui3006) with blast and BPH resistance were developed by pyramiding three resistance genes Pigm, Bph6 and Bph9. Two new hybrid rice varieties, Weiliangyou7713 and Xuanliangyou3006, derived from Huahui7713 and Huahui3006, have been developed and commercialized in China. Weiliangyou7713 and Xuanliangyou3006 exhibit enhanced resistance to both blast and BPH, while maintaining optimal yield and grain quality. The adoption of Weiliangyou7713 continues to expand, now being cultivated on a large scale, which is promising for its future role in reducing the dependence on chemical fungicides and pesticides in rice production. This suggests that the implementation of Huahui7713 and Huahui3006 in targeted breeding programs could be highly beneficial for developing rice varieties with strong resistance to blast and BPH. [ABSTRACT FROM AUTHOR]

Rice (Oryza sativa) is one of the most important staple foods worldwide. However, rice blast disease, caused by the ascomycete fungus Magnaporthe oryzae, seriously affects the yield and quality of rice. Calmodulin-binding transcriptional activators (CAMTAs) play vital roles in the response to biotic stresses. In this study, we showed that OsCAMTA3 and CAMTA PROTEIN LIKE (OsCAMTAPL), an OsCAMTA3 homolog that lacks the DNA-binding domain, functioned together in negatively regulating disease resistance in rice. OsCAMTA3 associated with OsCAMTAPL. The oscamta3 and oscamtapl mutants showed enhanced resistance compared to wild-type plants, and oscamta3/pl double mutants showed more robust resistance to M. oryzae than oscamta3 or oscamtapl. An RNA-Seq analysis revealed that 59 and 73 genes, respectively, were differentially expressed in wild-type plants and oscamta3 before and after inoculation with M. oryzae, including OsALDH2B1, an acetaldehyde dehydrogenase that negatively regulates plant immunity. OsCAMTA3 could directly bind to the promoter of OsALDH2B1, and OsALDH2B1 expression was decreased in oscamta3, oscamtapl, and oscamta3/pl mutants. In conclusion, OsCAMTA3 associates with OsCAMTAPL to regulate disease resistance by binding and activating the expression of OsALDH2B1 in rice, which reveals a strategy by which rice controls rice blast disease and provides important genes for resistance breeding holding a certain positive impact on ensuring food security. [ABSTRACT FROM AUTHOR]

【Objective】 Rice blast resistance genes Pi2 and Pita are broad-spectrum resistance genes to rice blast in rice areas in South China, which have very important application value for rice blast resistance breeding. Therefore, the development of a set of efficient identification methods is beneficial to genetic breeding efficiency of rice blast-resistant varieties.【Method】According to the variant GCA GGA/GTG TTA of the 787 and 788 codons of the Pi2 gene in ‘Huanghuangyouzhan’ (highly resistant to rice blast) and ‘Guangluai 4’ (highly susceptible to rice blast), and the variant G/T at base 6 640 of Pita gene in Tetp (an international rice germplasm resource with high resistance to rice blast) and Lijiang Xintuan Heigu (a local ermplasm resource with high susceptibility to rice blast), based on the competitive allele PCR (Kompetitive Allele Specific PCR, KASP) labeling technology principle, molecular markers of rice blast resistance genes were developed.【Result】 Two KASP markers (W-Pi2 and W-Pita) were developed to detect the functional sites of Pi2 and Pita. The markers were used to detect the conventional rice, aromatic rice and hybrid rice cultivated by the Rice Research Institute of Guangdong Academy of Agricultural Sciences. 19 resistant varieties were screened, including 13 varieties with a single gene tested as a diseaseresistant allele and 6 varieties with two genes tested as disease-resistant alleles. The comparison of the two markers suggested that the frequency of disease-resistance was higher in the varieties carrying Pi2 resistance gene than in the varieties carrying Pita resistance gene. The results showed that the two markers could detect the allele types of rice blast resistance genes Pi2 and Pita in breeding materials in the early stage (seed or seedling stage), and the breeding materials were not required to be planted in the disease nursery, then individual plants carrying resistant alleles could be screened and identified.【Conclusion】 The developed KASP functional molecular markers W-Pi2 and W-Pita can better distinguish parental varieties with different resistance, clearly distinguish different allele types among breeding materials, and accurately screen breeding materials. [ABSTRACT FROM AUTHOR]

Auxin is an important phytohormone that regulates diverse biologic processes, including plant growth and immunity. Indole-3-acetic acid (IAA), known as one of the main forms of auxin, is able to activate plant immunity. However, it is unknown whether IAA enhances plant resistance and/or suppresses the growth of the fungal pathogen Magnaporthe oryzae. Here, we found that IAA could induce expression levels of pathogenesis-related genes to enhance disease resistance and could control the development of blast disease through inhibiting M. oryzae infection. Exogenous IAA suppressed mycelial growth and delayed spore germination by inhibiting fungal endogenous IAA biosynthesis and impairing redox homeostasis, respectively. When applied to a field test, two IAA analogues, 1-naphthaleneacetic acid and 2,4-dichlorophenoxy acetic acid, can effectively control rice blast disease. Our study advances the understanding of IAA in controlling rice blast disease through suppressing pathogen growth and enhancing plant resistance. [ABSTRACT FROM AUTHOR]

Rice blast, caused by the fungal pathogen Magnaporthe oryzae (M. oryzae), is a highly destructive disease that significantly impacts rice yield and quality. During the infection, M. oryzae secretes effector proteins to subvert the host immune response. However, the interaction between the effector protein AvrPik-D and its target proteins in rice, and the mechanism by which AvrPik-D exacerbates disease severity to facilitate infection, remains poorly understood. In this study, we found that the M. oryzae effector AvrPik-D interacts with the Rubisco (ribulose-1,5-bisphosphate carboxylase/oxygenase) small subunit OsRBCS4. The overexpression of the OsRBCS4 gene in transgenic rice not only enhances resistance to M. oryzae but also induces more reactive oxygen species following chitin treatment. OsRBCS4 localizes to chloroplasts and co-localizes with AvrPik-D within these organelles. AvrPik-D suppresses the transcriptional expression of OsRBCS4 and inhibits Rubisco activity in rice. In conclusion, our results demonstrate that the M. oryzae effector AvrPik-D targets the Rubisco small subunit OsRBCS4 and inhibits its carboxylase and oxygenase activity, thereby suppressing rice innate immunity to facilitate infection. This provides a novel mechanism for the M. oryzae effector to subvert the host immunity to promote infection. [ABSTRACT FROM AUTHOR]

Bacterial blight (BB), caused by Xanthomonas oryzae pv. oryzae (Xoo), is a widespread and destructive disease in rice production. Previously, we cloned an executor R gene, Xa7, which confers durable and broad-spectrum resistance to BB. Here, we further confirmed that the transcription activator-like effector (TALE) AvrXa7 in Xoo strains could directly bind to the effector-binding element (EBE) in the promoter of the Xa7 gene. Other executor R genes (Xa7, Xa10, Xa23, and Xa27) driven by the promoter of the Xa7 gene could be activated by AvrXa7 and trigger the hypersensitive response (HR) in tobacco leaves. When the expression of the Xa23 gene was driven by the Xa7 promoter, the transgenic rice plants displayed a similar resistance spectrum as the Xa7 gene, demonstrating that the disease resistance characteristics of executor R genes are mainly determined by their induction patterns. Xa7 gene is induced locally by Xoo in the infected leaves, and its induction not only inhibited the growth of incompatible strains but also enhanced the resistance of rice plants to compatible strains, which overcame the shortcomings of its race-specific resistance. Transcriptome analysis of the Xa7 gene constitutive expression in rice plants displayed that Xa7-mediated disease resistance was related to the biosynthesis of lignin and thus enhanced resistance to Xoo. Overall, our results provided novel insights and important resources for further clarifying the molecular mechanisms of the executor R genes. [ABSTRACT FROM AUTHOR]

Conferring crops with resistance to multiple diseases is crucial for stable food production. Genetic engineering is an effective means of achieving this. The rice receptor-like cytoplasmic kinase BSR1 mediates microbe-associated molecular pattern-induced immunity. In our previous study, we demonstrated that rice lines overexpressing BSR1 under the control of the maize ubiquitin promoter exhibited broad-spectrum resistance to rice blast, brown spot, leaf blight, and bacterial seedling rot. However, unfavorable phenotypes were observed, such as a decreased seed germination rate and a partial darkening of husked rice. Herein, we present a strategy to address these unfavorable phenotypes using an OsUbi7 constitutive promoter with moderate expression levels and a pathogen-inducible PR1b promoter. Rice lines expressing BSR1 under the influence of both promoters maintained broad-spectrum disease resistance. The seed germination rate and coloration of husked rice were similar to those of the wild-type rice. [ABSTRACT FROM AUTHOR]

Cultivating rice varieties with robust blast resistance is the most effective and economical way to manage the rice blast disease. However, rice blast disease comprises leaf and panicle blast, which are different in terms of resistance mechanisms. While many blast resistant rice cultivars were bred using genes conferring resistance to only leaf or panicle blast, mining durable and effective quantitative trait loci (QTLs) for both panicle and leaf blast resistance is of paramount importance. In this study, we conducted a pangenome-wide association study (panGWAS) on 9 blast resistance related phenotypes using 414 international diverse rice accessions from an international rice panel. This approach led to the identification of 74 QTLs associated with rice blast resistance. One notable locus, qPBR1, validated in a F4:5 population and fine-mapped in a Heterogeneous Inbred Family (HIF), exhibited broad-spectrum, major and durable blast resistance throughout the growth period. Furthermore, we performed transcriptomic analysis of 3 resistant and 3 sensitive accessions at different time points after infection, revealing 3,311 differentially expressed genes (DEGs) potentially involved in blast resistance. Integration of the above results identified 6 candidate genes within the qPBR1 locus, with no significant negative effect on yield. The results of this study provide valuable germplasm resources, QTLs, blast response genes and candidate functional genes for developing rice varieties with enduring and broad-spectrum blast resistance. The qPBR1, in particular, holds significant potential for breeding new rice varieties with comprehensive and durable resistance throughout their growth period. [ABSTRACT FROM AUTHOR]

Rice blast, caused by Magnaporthe oryzae (M. oryzae), is one of the most common and damaging diseases of rice that limits rice yield and quality. The mediator complex plays a vital role in promoting transcription by bridging specific transcription factors and RNA polymerase II. Here, we show that the rice mediator subunit OsMED16 is essential for full induction of the diterpenoid phytoalexin biosynthesis genes and resistance to the ascomycetous fungus M. oryzae. Mutants of Osmed16 show reduced expression of the DP biosynthesis genes and are markedly more susceptible to M. oryzae, while transgenic plants overexpressing OsMED16 increased the expression of the DP biosynthesis genes and significantly enhanced resistance to M. oryzae. Interestingly, OsMED16 is physically associated with the WRKY family transcription factor OsWRKY45, which interacts with the phytoalexin synthesis key regulator transcription factor OsWRKY62. Further, OsMED16-OsWRKY45-OsWRKY62 complex could bind to the promoter regions of phytoalexin synthesis-related genes and activate their gene expression. Our results show that OsMED16 may enhance rice tolerance to M. oryzae via directly manipulating phytoalexin de novo biosynthesis. [ABSTRACT FROM AUTHOR]

Huamoxiang 3 (HMX3) is a new variety of whole grain black rice that has been bred for its superior taste and nutritional benefits. Whole grain black rice is rich in anthocyanins, which have antioxidant and anti-inflammatory properties. Despite the health benefits of whole grain rice, its consumption remains low worldwide. HMX3 was developed through a breeding program and has been certified as a new variety. It has shown good performance in terms of yield and quality and has received positive feedback from consumers. The nutritional composition of HMX3 is superior to milled grain rice, with higher levels of protein, dietary fiber, amino acids, oil, vitamins, minerals, and bioactive compounds. HMX3 is recommended for late rice cropping in Hubei Province. The research was supported by various grants. [Extracted from the article]

Rice blast disease, caused by the fungus Magnaporthe oryzae, is a significant threat to rice production. Resistant cultivars can effectively resist the invasion of M. oryzae. Thus, the identification of disease-resistant genes is of utmost importance for improving rice production. Autophagy, a cellular process that recycles damaged components, plays a vital role in plant growth, development, senescence, stress response, and immunity. To understand the involvement of autophagy-related genes (ATGs) in rice immune response against M. oryzae, we conducted a comprehensive analysis of 37 OsATGs, including bioinformatic analysis, transcriptome analysis, disease resistance analysis, and protein interaction analysis. Bioinformatic analysis revealed that the promoter regions of 33 OsATGs contained cis-acting elements responsive to salicylic acid (SA) or jasmonic acid (JA), two key hormones involved in plant defense responses. Transcriptome data showed that 21 OsATGs were upregulated during M. oryzae infection. Loss-of-function experiments demonstrated that OsATG6c, OsATG8a, OsATG9b, and OsATG13a contribute to rice blast resistance. Additionally, through protein interaction analysis, we identified five proteins that may interact with OsATG13a and potentially contribute to plant immunity. Our study highlights the important role of autophagy in rice immunity and suggests that OsATGs may enhance resistance to rice blast fungus through the involvement of SA, JA, or immune-related proteins. These findings provide valuable insights for future efforts in improving rice production through the identification and utilization of autophagy-related genes. [ABSTRACT FROM AUTHOR]

The aim of the present work is to biosynthesize Chitosan nanoparticles (CTNp) using tea (Camellia sinensis) extract, with potent antimicrobial properties towards phytopathogens of rice. Preliminary chemical analysis of the extract showed that they contain carbohydrate as major compound and uronic acid indicating the nature of acidic polysaccharide. The structure of the isolated polysaccharide was analyzed through FTIR and 1H NMR. The CTNp was prepared by the addition of isolated tea polysaccharides to chitosan solution. The structure and size of the CTNp was determined through FTIR and DLS analyses. The surface morphology and size of the CTNp was analysed by SEM and HRTEM. The crystalinity nature of the synthesized nanoparticle was identified by XRD analysis. The CTNp exhibited the antimicrobial properties against the most devastating pathogens of rice viz., Pyricularia grisea, Xanthomonas oryzae under in vitro condition. CTNp also suppressed the blast and blight disease of rice under the detached leaf assay. These results suggest that the biosynthesized CTNp can be used to control the most devastating pathogens of rice. [ABSTRACT FROM AUTHOR]

Rice blast and bacterial leaf blight, are major disease, significantly threatens rice yield in all rice growing regions under favorable conditions and identification of resistance genes and their superior haplotypes is a potential strategy for effectively managing and controlling this devastating disease. In this study, we conducted a genome-wide association study (GWAS) using a diverse set of 147 rice accessions for blast and bacterial blight diseases in replications. Results revealed 23 (9 for blast and 14 for BLB) significant marker-trait associations (MTAs) that corresponded to 107 and 210 candidate genes for blast and BLB, respectively. The haplo-pheno analysis of the candidate genes led to the identification of eight superior haplotypes for blast,with an average SES score ranging from 0.00 to 1.33, and five superior haplotypes for BLB, with scores ranging from 1.52cm to 4.86cm superior haplotypes. Among these, superior haplotypes LOC_OS12G39700-H4 and LOC_Os06g30440-H33 were identified with the lowest average blast scores of 0.00-0.67, and superior haplotype LOC_Os02g12660-H39 exhibited the lowest average lesion length (1.88 - 2.06cm) for BLB. A total of ten accessions for blast and eight accessions for BLB were identified carrying superior haplotypes were identified. These haplotypes belong to aus and indx subpopulations of five countries (Bangladesh, Brazil, India, Myanmar, and Pakistan). For BLB resistance, eight accessions from six countries (Bangladesh, China, India, Myanmar, Pakistan, and Sri Lanka) and four subpopulations (aus, ind1A, ind2, and ind3) were identified carrying superior haplotypes. Interestingly, four candidate genes, LOC_Os06g21040, LOC_Os04g23960, LOC_Os12g39700, and LOC_Os01g24640 encoding transposon and retrotransposon proteins were among those with superior haplotypes known to play a crucial role in plant defense responses. These identified superior haplotypes have the potential to be combined into a single genetic background through haplotype-based breeding for a broader resistance spectrum against blast and bacterial blight diseases. [ABSTRACT FROM AUTHOR]

In the context of agricultural sustainability and food security, timely and precise identification of plant diseases holds paramount significance. This research proposes an innovative approach to diagnose bacterial leaf blight (BLB), rice blast (RB), and brown spot (BS) in rice leaves utilizing the VGG16 convolutional neural network (CNN). By leveraging deep learning capabilities, the proposed model analyzes high-resolution images of rice leaves to classify and distinguish between the different diseases. The VGG16 architecture has shown remarkable performance in image recognition tasks, and this study aims to harness its potential for precision agriculture. Rice (Oryza sativa) is a staple crop that plays a crucial role in global food security. Timely and precise diagnosis of these diseases is vital for effective disease management and crop protection. Our methodology involves the collection and curation of a diverse dataset of rice leaf images. The VGG16 model, a proven deep convolutional neural network (CNN) architecture, is employed for extraction of features and classification. The results of our study demonstrate the efficacy of the VGG16 model in distinguishing between different rice leaf diseases with remarkable precision. This high level of accuracy holds great promise for the field of agriculture, offering a non-invasive and efficient means of disease detection. Early disease identification can facilitate timely intervention, reducing crop losses and mitigating the economic impact on farmers. The classification accuracy of the proposed method is 97.77% using the publicly available dataset. [ABSTRACT FROM AUTHOR]

Leaf blast is recognized as one of the most devastating diseases affecting rice production in the world, seriously threatening rice yield. Therefore, early detection of leaf blast is extremely important to limit the spread and propagation of the disease. In this study, a leaf blast-specific spectral vegetation index RBVI = 9.78 R 816 − R 724 − 2.08( ρ 736 / R 724 ) was designed to qualitatively detect the level of leaf blast disease in the canopy of a field and to improve the accuracy of early detection of leaf blast by remote sensing by unmanned aerial vehicle. Stacking integrated learning, AdaBoost, and SVM were used to compare and analyze the performance of the RBVI and traditional vegetation index for early detection of leaf blast. The results showed that the stacking model constructed based on the RBVI spectral index had the highest detection accuracy (OA: 95.9%, Kappa: 93.8%). Compared to stacking, the detection accuracy of the SVM and AdaBoost models constructed based on the RBVI is slightly degraded. Compared with conventional SVIs, the RBVI had higher accuracy in its ability to qualitatively detect leaf blast in the field. The leaf blast-specific spectral index RBVI proposed in this study can more effectively improve the accuracy of UAV remote sensing for early detection of rice leaf blast in the field and make up for the shortcomings of UAV hyperspectral detection, which is susceptible to interference by environmental factors. The results of this study can provide a simple and effective method for field management and timely control of the disease. [ABSTRACT FROM AUTHOR]

Variance or complete loss of the avirulence gene (Avr) enables the pathogen to escape resistance protein (R) recognition. The field resistance effectiveness of the R gene is determined by its corresponding Avr gene in field isolates. To effectively deploy the rice blast R gene Pi54, the distribution, variation and evolution of the corresponding Avr gene, AvrPi54, were determined through PCR amplification, pathogenicity assay, gene sequences and evolutionary analysis. Among 451 Pyricularia isolates from rice and non-rice hosts, including Oryza rufipogon, Digitaria sanguinalis, Eleusine coracana, E. indica and Musa sp. in Yunnan province, the PCR amplification result showed that AvrPi54 alleles existed among 218 (48.3%) isolates including rice isolates, O. rufipogon isolates and E. coracana isolates. Pathogenicity assay showed that 336 (74.5%) isolates were avirulent to Tetep (holding Pi54). Five AvrPi54 haplotypes were identified among 142 isolates through the gene sequence. These haplotypes were determined to be avirulent to Pi54 through pathogenicity assay. Four novel haplotypes (H2 to H5) of the AvrPi54 gene would provide new target sites for rice blast control. Haplotype diversity analysis indicated that there existed a lower genetic diversity of AvrPi54 for P. oryzae populations (five haplotypes, Hd = 0.127, π = 2.9 × 10−4) in this study. Neutrality tests showed that AvrPi54's genetic variation was affected by purified selection. Haplotype network and phylogeny analysis showed that H1 was an ancestral haplotype and was widely distributed in rice isolates and O. rufipogon isolates, while H5 diverged early and evolved independently. These results indicate that the gene evolves slowly and stably and is a comparatively conserved Avr gene. [ABSTRACT FROM AUTHOR]

In order to understand the pathogenicity differentiation of rice blast fungus (Pyricularia oryzae Cavara), a total of 206 isolates of P. oryzae were collected from three Japonica rice regions in Jilin Province, northeast China. Pathogenicity test showed that the reaction pattern of 25 monogenic differential varieties (MDVs) of rice (Oryza sativa L.) demonstrated a wide pathogenic diversity among the isolates. Those MDVs harbor 23 resistance (R) genes with the susceptible variety Lijiangxintuanheigu (LTH) as control. Virulent isolates of MDVs harboring R genes Pish, Pit, Pia, Pii, Pik-s, Pik, Pita (two lines), and Pita-2 (two lines) had high frequencies ranging from 80 to 100%, to MDVs harboring R genes Pib, Pi5(t), Pik-m, Pi1, Pik-h, Pik-p, Pi7(t), Piz, Piz-5, and Piz-t showed intermediate frequencies ranging from 40 to 80%, and to MDVs with R genes Pi3, Pi9(t), Pi12(t), Pi19(t) and Pi20(t) presented low frequencies ranging only from 0 to 40%. The U-i-k-z-ta pattern of race-named criteria categorized the 206 isolates into 175 races. Sub-unit U73 for Pib, i7 for Pi3 and Pi5(t), k177 for Pik-m/Pik-h/Pik-p, z17 for Pi9(t), and ta332 for Pi20(t) were crucial on pathogenic differences in regions. Twenty-seven standard differential blast isolates (SDBIs) were selected to characterize resistance in rice accessions. This study could help to build a durable identification system against blast in the Japonica rice area of northeast China and enhance our understanding of the differentiation and diversity of blast races in the world. [ABSTRACT FROM AUTHOR]

Receptor-like kinases (RLKs) are major regulators of the plant immune response and play important roles in the perception and transmission of immune signals. RECEPTOR LIKE KINASE 902 (RLK902) is at the key node in leucine-rich repeat receptor-like kinase interaction networks and positively regulates resistance to the bacterial pathogen Pseudomonas syringae in Arabidopsis. However, the function of RLK902 in fungal disease resistance remains obscure. In this study, we found that the expression levels of OsRLK902-1 and OsRLK902-2 , encoding two orthologues of RLK902 in rice, were induced by Magnaporthe oryzae , chitin, and flg22 treatment. osrlk902-1 and osrlk902-2 knockout mutants displayed enhanced susceptibility to M. oryzae. Interestingly, the osrlk902-1 rlk902-2 double mutant exhibited similar disease susceptibility, hydrogen peroxide production, and callose deposition to the two single mutants. Further investigation showed that OsRLK902-1 interacts with and stabilizes OsRLK902-2. The two OsRLKs form a complex with OsRLCK185, a key regulator in chitin-triggered immunity, and stabilize it. Taken together, our data demonstrate that OsRLK902-1 and OsRLK902-2, as well as OsRLCK185 function together in regulating disease resistance to M. oryzae in rice. [ABSTRACT FROM AUTHOR]

Rice is a staple crop feeding more than 50% of the world's population and, its sustainable production is crucial to the global food security. However, blast disease caused by the filamentous fungus Magnaporthe oryzae (anamorph: Pyricularia oryzae) threatens sustainable rice production as it can reduce grain yields over 30% in epidemic years. Therefore, deciphering the molecular mechanisms of the M. oryzae-rice interaction and the mechanism that how M. oryzae overcomes rice defense is crucial for developing new strategies to make green fungicides and disease-resistant rice varieties. This review provides a comprehensive overview of the latest advances in understanding the molecular mechanisms by which M. oryzae perceives host surface signals and subsequently develops specific infection structure called appressoria. In addition, the review delves into the strategies that the fungus utilizes to overcome host immunity, which in turn allows it to colonize rice tissues. Finally, we propose the perspectives for dissecting the pathogenesis of the fungus and controlling rice blast disease. [ABSTRACT FROM AUTHOR]

Rice is an important cereal crop worldwide, the growth of which is affected by rice blast disease, caused by the fungal pathogen Magnaporthe oryzae. As climate change increases the diversity of pathogens, the disease resistance genes (R genes) in plants must be identified. The major blast-resistance genes have been identified in indica rice varieties; therefore, japonica rice varieties with R genes now need to be identified. Because leucine-rich repeat (LRR) domain proteins possess R-gene properties, we used bioinformatics analysis to identify the rice candidate LRR domain receptor-like proteins (OsLRR-RLPs). OsLRR-RLP2, which contains six LRR domains, showed differences in the DNA sequence, containing 43 single-nucleotide polymorphisms (SNPs) in indica and japonica subpopulations. The results of the M. oryzae inoculation analysis indicated that indica varieties with partial deletion of OsLRR-RLP2 showed susceptibility, whereas japonica varieties with intact OsLRR-RLP2 showed resistance. The oslrr-rlp2 mutant, generated using clustered regularly interspaced palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9), showed increased pathogen susceptibility, whereas plants overexpressing this gene showed pathogen resistance. These results indicate that OsLRR-RLP2 confers resistance to rice, and OsLRR-RLP2 may be useful for breeding resistant cultivars. [ABSTRACT FROM AUTHOR]

Summary: Rice blast, the most destructive disease of cultivated rice world‐wide, is caused by the filamentous fungus Magnaporthe oryzae. To cause disease in plants, M. oryzae secretes a diverse range of effector proteins to suppress plant defense responses, modulate cellular processes, and support pathogen growth. Some effectors can be secreted by appressoria even before host penetration, while others accumulate in the apoplast, or enter living plant cells where they target specific plant subcellular compartments. During plant infection, the blast fungus induces the formation of a specialized plant structure known as the biotrophic interfacial complex (BIC), which appears to be crucial for effector delivery into plant cells. Here, we review recent advances in the cell biology of M. oryzae–host interactions and show how new breakthroughs in disease control have stemmed from an increased understanding of effector proteins of M. oryzae are deployed and delivered into plant cells to enable pathogen invasion and host susceptibility. [ABSTRACT FROM AUTHOR]

Summary: Brassinosteroids (BRs) play a crucial role in shaping the architecture of rice (Oryza sativa) plants. However, the regulatory mechanism of BR signalling in rice immunity remains largely unexplored. Here we identify a rice mutant dla, which exhibits decreased leaf angles and is insensitive to 24‐epiBL (a highly active synthetic BR), resembling the BR‐deficient phenotype. The dla mutation caused by a T‐DNA insertion in the OsDLA gene leads to downregulation of the causative gene. The OsDLA knockout plants display reduced leaf angles and less sensitivity to 24‐epiBL. In addition, both dla mutant and OsDLA knockout plants are more susceptible to rice blast compared to the wild type. OsDLA is a GRAS transcription factor and interacts with the BR signalling core negative regulator, GSK2. GSK2 phosphorylates OsDLA for degradation via the 26S proteasome. The GSK2 RNAi line exhibits enhanced rice blast resistance, while the overexpression lines thereof show susceptibility to rice blast. Furthermore, we show that OsDLA interacts with and stabilizes the WRKY transcription factor OsWRKY53, which has been demonstrated to positively regulate BR signalling and blast resistance. OsWRKY53 directly binds the promoter of PBZ1 and activates its expression, and this activation can be enhanced by OsDLA. Together, our findings unravel a novel mechanism whereby the GSK2‐OsDLA‐OsWRKY53 module coordinates blast resistance and plant architecture via BR signalling in rice. [ABSTRACT FROM AUTHOR]

JAZ proteins function as transcriptional regulators that form a jasmonic acid–isoleucine (JA-Ile) receptor complex with coronatine insensitive 1 (COI1) and regulate plant growth and development. These proteins also act as key mediators in signal transduction pathways that activate the defense-related genes. Herein, the role of OsJAZ4 in rice blast resistance, a severe disease, was examined. The mutation of OsJAZ4 revealed its significance in Magnaporthe oryzae (M. oryzae) resistance and the seed setting rate in rice. In addition, weaker M. oryzae-induced ROS production and expression of the defense genes OsO4g10010, OsWRKY45, OsNAC4, and OsPR3 was observed in osjaz4 compared to Nipponbare (NPB); also, the jasmonic acid (JA) and gibberellin4 (GA4) content was significantly lower in osjaz4 than in NPB. Moreover, osjaz4 exhibited a phenotype featuring a reduced seed setting rate. These observations highlight the involvement of OsJAZ4 in the regulation of JA and GA4 content, playing a positive role in regulating the rice blast resistance and seed setting rate. [ABSTRACT FROM AUTHOR]