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Two Gonyaulax-like strains were established by isolating cells from Korean coastal waters, and their morphologies and molecular phylogenies based on SSU and LSU rRNA gene sequences were examined. The motile cells displayed neutral torsion and a plate formula typical for the genus Gonyaulax, and were characterized by a reticulated surface with many pores, and a marked antapical flange on the boundary between 1″″ and 2p or two prominent spines. The reticulate ornamentation was sometimes absent on the plate margin or on the entire plate. Pronounced rows of pores on the margins of precingular, cingular and postcingular plates were observed, and especially a distinct pore was always present on the margin of the anterior sulcal plate contacting with 1″. A spiniferate resting cyst had a red body, gonal and intergonal processes, and an antapical flange. In the phylogenetic tree, the Korean isolates had a close relationship to Gonyaulax membranacea and were clearly divergent from other Gonyaulax species. These species can be distinguished by the presence or absence of a distinct pore on the margin of the anterior sulcal plate in touch with 1″, and different process types in cyst morphology. Based on these morpho-molecular data, Gonyaulax kunsanensis sp. nov. is proposed. [ABSTRACT FROM AUTHOR]

We describe the life cycle, morphology and molecular phylogenetic position of Fragilidium mexicanum, based on vegetative cells established by incubation of resting cysts isolated from sediment trap samples collected at Jinhae–Masan Bay, Korea. Resting cysts of F. mexicanum were spherical and surrounded by transparent mucilage, similar to other Fragilidium species. Germinated vegetative cells were identified as F. mexicanum based on thecal morphology and tabulation; the plate formula was Po, Pc, 4ʹ, 8″, 10c, 6s, 7ʹʹʹ, 1p, 2ʹʹʹʹ. Molecular phylogenetic analyses of sequence data for small and large subunits of ribosomal DNA genes revealed that Fragilidium species were monophyletic with high supports and that F. mexicanum formed a separate clade with Fragilidium sp. (JQ317599). Time-lapse photography was used to clarify the life history. Isolated resting cysts germinated into an unarmoured planomeiocyte and directly formed the pellicle cyst, with an armoured planomeiocyte emerging from the pellicle cyst. The armoured planomeiocyte underwent ecdysis and formed a coccoid meiocyte, with a two-celled chain emerging from the coccoid meiocyte. Like the armoured planomeicyte, vegetative cells also underwent ecdysis and then divided into two daughter cells that eventually emerged as motile vegetative cells. The life cycle of F. mexicanum has nonmotile life history stages that regularly alternate with motile stages. The nonmotile stage consists of five forms: resting cyst, pellicle cyst, asexual coccoid stage, coccoid meiocyte, and zygote. The motile stage also has five forms: unarmoured and armoured planomeiocyte, planozygote, gamete and vegetative cell. [ABSTRACT FROM AUTHOR]

A new phototrophic dinoflagellate, Grammatodinium tongyeonginum gen. & sp. nov., was established by incubating resting cysts collected from surface sediment samples from Tongyeong coastal area, Korea. The resting cysts were ovoid with a large reddish pigment body and surrounded with a thick mucous layer that incorporated attached detritus particles. The vegetative cells were 24.6-40.9 μm long and 16.4-27.3 μm wide. The cell surface was covered with prominent longitudinal equidistant furrows. The cingulum was narrow and descended two to eight times its width. The nucleus was located at the central part of the epicone. The peripheral chloroplasts were usually granular and yellow-green in culture and were distributed along the rim of the cingulum. The horseshoe-shaped apical groove ran from the end of the sulcal extension anticlockwise around the apex. The distal end of the apical groove was located next to the extension of the sulcus and more to the ventral side than the proximal end. Molecular phylogenetic analysis using small subunit ribosomal DNA (SSU rDNA) gene sequences revealed that G. tongyeonginum was allied with the Cucumeridinium species. Large subunit ribosomal DNA (LSU rDNA) sequences revealed that G. tongyeonginum formed a clade distantly related to the other genera of Gymnodiniales. The combination of morphological characteristics with molecular phylogenies distinguished the present species from other genera within Gymnodiniales. [ABSTRACT FROM AUTHOR]

This study provides the first morphological features of resting cysts of Cochlodinium polykrikoides collected from Korean coastal sediments. Evidence for the existence of resting cysts of C. polykrikoides is based on the morphological and molecular phylogenetic data of the germinated cells and a resting cyst. The morphology of the resting cysts differed from that reported previously in sediments and culture experiments. The distinct feature is that the cyst body was covered by the reticulate ornaments and spines. [ABSTRACT FROM AUTHOR]

The dinoflagellate genus Scrippsiella is a common member of phytoplankton and their cysts are also frequently reported in coastal sediments worldwide. However, the diversity of Scrippsiella in Korean waters has not been fully investigated. Here, several isolates of Scrippsiella precaria collected from Korean waters and germinated from resting cysts were examined using light and scanning electron microscopy. The resting cysts were characterized by pointed calcareous spines and one or two red accumulation bodies, and the archeopyle was mesoepicystal, representing the loss of 2–4′ and 1–3a paraplates. Rounded resting cysts were found in culture, and an increase in spine length was observed until 8 days of development. Korean isolates of S. precaria had the plate formula of Po, X, 4′, 3a, 7″, 6C, 4S, 5‴, 2⁗. There were differences in the cell size and location of the red body between Korean isolates and previously described cells of S. precaria. In addition, the Korean isolates of S. precaria had two types of the 5″ plate that either contacted the 2a plate or not. Molecular phylogeny based on internal transcribed spacer (ITS) and large subunit (LSU) rDNA sequences revealed that the Korean isolates were nested within the subclade of PRE (S. precaria and related species) in the clade of Scrippsiella sensu lato, and that the PRE subclade had two ribotypes: ribotype 1 consisting of the isolates from Korea, China, and Australia, and ribotype 2 consisting of the isolates from Italy and Greece. Lineages between isolates of ribotype 1 were likely to be related to the dispersal by ocean currents and ballast waters from international shipping, and the two types of spine shapes and locations of the 5″ plates may be a distinct feature for ribotype 1. [ABSTRACT FROM AUTHOR]

The potentially harmful species Alexandrium insuetum established by the incubation of resting cysts isolated from sediment trap samples collected at Jinhae-Masan Bay, Korea was characterized by morphological and phylogenetic analysis. The effects of temperature and salinity on the growth of A. insuetum were also investigated. The resting cysts are characterized by a spherical shape, a small size (20–25 μm) and the presence of either three or four red accumulation bodies. The similarity of morphological features of the resting cysts to those of other species of the minutum group (consisting of Alexandrium minutum and A. tamutum ) indicates that the morphological features of resting cysts might improve the accuracy of the grouping of Alexandrium species. A. insuetum germinated from the resting cysts is morphologically consistent with vegetative cells reported from Korean and Japanese coastal areas, and has an partial large subunit (LSU) rDNA sequence identical to that from Japanese strains. The growth of A. insuetum was observed between salinity 20 and 35, with increasing temperature; however at 25 °C, A. insuetum could grow even at the salinity of 15. The highest growth rate (0.60 d −1 ) was observed at 25 °C and the salinity of 25, which is higher than the previously reported growth rate of A. tamarense , which is responsible for outbreaks of paralytic shellfish poisoining and blooms in Jinhae-Masan Bay. These results suggest that the proliferation of A. insuetum in Jinhae-Masan Bay is likely to be highest during the summer. [ABSTRACT FROM AUTHOR]

• A species identified as Cochlodinium geminatum and Polykrikos geminatus reclassified. • The species was re-described as Pseudocochlodinium profundisulcus gen. et sp. nov. • Redescription based on characteristic ASC, cingulum, sulcus and molecular phylogeny. • DNA metabarcoding found a wide distribution of the species in the coastal sediments of China. • Analyzed on rRNA gene sequences suggest a possible S-N expansion or warm water preference. Harmful algal blooms (HABs) caused by an unknown dinoflagellate species have frequently occurred in the Pearl River Estuary, China Since 2006. These blooms were associated with severe water discoloration and economic losses, ranging from several km2 to 300 km2 with the maximum recorded cell density being 2.77 × 107 cells⋅L−1. This unknown dinoflagellate species was initially identified as Cochlodinium geminatum and subsequently reclassified as Polykrikos geminatus. However, after reviewing the original descriptions for Cochlodinium geminatum sensu Schütt (1895) and the genus Polykrikos , we considered this species is incongruent with their original descriptions. Further morphological examinations and particularly phylogenetic analyses based on the SSU and partial LSU rRNA genes of isolates and resting cysts from China and Japan prompted us to consider it a new species of a new genus. This new species was proposed to be Pseudocochlodinium profundisulcus gen. et sp. nov., based on its open comma-shaped apical structure complex (ASC), cingulum encircling the cell less than one and a half turns, a deep sulcus with a torsion of a half turn, either single cell or cell chain consisting of two cells with the same number of nuclei and zooids, the resting cyst bearing lobed ornaments, and the evolutionary distances from Polykrikos (and others) on the phylogenetic trees constructed using the concatenated SSU and partial LSU rRNA gene sequences. Metabarcoding investigation of surface sediment samples collected in China revealed that the species to be widely present along the entire Chinese coast with the highest abundance in the South China Sea. Further re-analysis of the Tara Oceans metabarcoding dataset targeting the SSU rRNA gene V9 domain suggested a global distribution of this new genus. Phylogenetic analyses on 46 OTUs (average length: ∼552 bases) of its LSU rRNA gene sequences (mainly D1-D2 domains) obtained from surface sediment samples revealed intraspecific genetic diversity of this species. Interestingly, based on the different distributions and the abundance of these OTUs along the coast of China, this species appeared to have expanded its distribution from the South China Sea to the northern Yellow Sea, or preferred a warm water habitat. We consider that the present work improves the taxonomy and provides important insights into the biogeography of Pseudocochlodinium profundisulcus.⋅ [ABSTRACT FROM AUTHOR]