1. Human embryonic stem cell classification: random network with autoencoded feature extractor
- Author
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Nikki Jo-Hao Weng, Bir Bhanu, Hengyue Liu, Rajkumar Theagarajan, Prue Talbot, and Benjamin X. Guan
- Subjects
Paper ,Neural Networks ,Computer science ,Human Embryonic Stem Cells ,cell classification ,Biomedical Engineering ,Special Series on Artificial Intelligence and Machine Learning in Biomedical Optics ,Video microscopy ,human embryonic stem cell ,Optical Physics ,Regenerative Medicine ,Data modeling ,Biomaterials ,Computer ,Opthalmology and Optometry ,Feature (machine learning) ,Humans ,Stem Cell Research - Embryonic - Human ,Random graph ,Contextual image classification ,business.industry ,Deep learning ,Pattern recognition ,Optics ,Image segmentation ,bioinformatics ,Stem Cell Research ,phase contrast videos ,Autoencoder ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,Neural Networks, Computer ,Artificial intelligence ,Generic health relevance ,business - Abstract
SignificanceAutomated understanding of human embryonic stem cell (hESC) videos is essential for the quantified analysis and classification of various states of hESCs and their health for diverse applications in regenerative medicine.AimThis paper aims to develop an ensemble method and bagging of deep learning classifiers as a model for hESC classification on a video dataset collected using a phase contrast microscope.ApproachThe paper describes a deep learning-based random network (RandNet) with an autoencoded feature extractor for the classification of hESCs into six different classes, namely, (1)cell clusters, (2)debris, (3)unattached cells, (4)attached cells, (5)dynamically blebbing cells, and (6)apoptotically blebbing cells. The approach uses unlabeled data to pre-train the autoencoder network and fine-tunes it using the available annotated data.ResultsThe proposed approach achieves a classification accuracy of 97.23 ± 0.94 % and outperforms the state-of-the-art methods. Additionally, the approach has a very low training cost compared with the other deep-learning-based approaches, and it can be used as a tool for annotating new videos, saving enormous hours of manual labor.ConclusionsRandNet is an efficient and effective method that uses a combination of subnetworks trained using both labeled and unlabeled data to classify hESC images.
- Published
- 2021