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2. Segmented Glioma Classification Using Radiomics-Based Machine Learning: A Comparative Analysis of Feature Selection Techniques
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Jlassi, Amal, Omri, Amel, ElBedoui, Khaoula, Barhoumi, Walid, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Rocha, Ana Paula, editor, Steels, Luc, editor, and van den Herik, Jaap, editor
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- 2024
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3. Prediction of MGMT Methylation Status of Glioblastoma Using Radiomics and Latent Space Shape Features
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Pálsson, Sveinn, Cerri, Stefano, Van Leemput, Koen, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
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- 2022
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4. Why did European Radiology reject my radiomic biomarker paper? How to correctly evaluate imaging biomarkers in a clinical setting
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Halligan, Steve, Menu, Yves, and Mallett, Sue
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- 2021
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5. Robustness of Radiomics Features to Varying Segmentation Algorithms in Magnetic Resonance Images
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Cairone, Luca, Benfante, Viviana, Bignardi, Samuel, Marinozzi, Franco, Yezzi, Anthony, Tuttolomondo, Antonino, Salvaggio, Giuseppe, Bini, Fabiano, Comelli, Albert, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Mazzeo, Pier Luigi, editor, Frontoni, Emanuele, editor, Sclaroff, Stan, editor, and Distante, Cosimo, editor
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- 2022
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6. PET Images Atlas-Based Segmentation Performed in Native and in Template Space: A Radiomics Repeatability Study in Mouse Models
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Giaccone, Paolo, Benfante, Viviana, Stefano, Alessandro, Cammarata, Francesco Paolo, Russo, Giorgio, Comelli, Albert, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Mazzeo, Pier Luigi, editor, Frontoni, Emanuele, editor, Sclaroff, Stan, editor, and Distante, Cosimo, editor
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- 2022
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7. A Predictive System to Classify Preoperative Grading of Rectal Cancer Using Radiomics Features
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Canfora, Ilaria, Cutaia, Giuseppe, Marcianò, Marco, Calamia, Mauro, Faraone, Roberta, Cannella, Roberto, Benfante, Viviana, Comelli, Albert, Guercio, Giovanni, Giuseppe, Lo Re, Salvaggio, Giuseppe, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Mazzeo, Pier Luigi, editor, Frontoni, Emanuele, editor, Sclaroff, Stan, editor, and Distante, Cosimo, editor
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- 2022
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8. MRI-Based Radiomics Analysis for Identification of Features Correlated with the Expanded Disability Status Scale of Multiple Sclerosis Patients
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Nepi, Valentina, Pasini, Giovanni, Bini, Fabiano, Marinozzi, Franco, Russo, Giorgio, Stefano, Alessandro, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Mazzeo, Pier Luigi, editor, Frontoni, Emanuele, editor, Sclaroff, Stan, editor, and Distante, Cosimo, editor
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- 2022
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9. matRadiomics: From Biomedical Image Visualization to Predictive Model Implementation
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Pasini, Giovanni, Bini, Fabiano, Russo, Giorgio, Marinozzi, Franco, Stefano, Alessandro, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Mazzeo, Pier Luigi, editor, Frontoni, Emanuele, editor, Sclaroff, Stan, editor, and Distante, Cosimo, editor
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- 2022
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10. Radiomics Analyses of Schwannomas in the Head and Neck: A Preliminary Analysis
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Cutaia, Giuseppe, Gargano, Rosalia, Cannella, Roberto, Feo, Nicoletta, Greco, Antonio, Merennino, Giuseppe, Nicastro, Nicola, Comelli, Albert, Benfante, Viviana, Salvaggio, Giuseppe, Casto, Antonio Lo, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Mazzeo, Pier Luigi, editor, Frontoni, Emanuele, editor, Sclaroff, Stan, editor, and Distante, Cosimo, editor
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- 2022
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11. Dice Focal Loss with ResNet-like Encoder-Decoder Architecture in 3D Brain Tumor Segmentation
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Nguyen-Truong, Hai, Pham, Quan-Dung, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
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- 2022
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12. Comparison of MR Preprocessing Strategies and Sequences for Radiomics-Based MGMT Prediction
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Abler, Daniel, Andrearczyk, Vincent, Oreiller, Valentin, Garcia, Javier Barranco, Vuong, Diem, Tanadini-Lang, Stephanie, Guckenberger, Matthias, Reyes, Mauricio, Depeursinge, Adrien, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
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- 2022
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13. Self-training for Brain Tumour Segmentation with Uncertainty Estimation and Biophysics-Guided Survival Prediction
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Dai, Chengliang, Wang, Shuo, Raynaud, Hadrien, Mo, Yuanhan, Angelini, Elsa, Guo, Yike, Bai, Wenjia, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
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- 2021
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14. Overall Survival Prediction for Glioblastoma on Pre-treatment MRI Using Robust Radiomics and Priors
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Suter, Yannick, Knecht, Urspeter, Wiest, Roland, Reyes, Mauricio, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
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- 2021
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15. Computational Diagnostics of GBM Tumors in the Era of Radiomics and Radiogenomics
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Kazerooni, Anahita Fathi, Davatzikos, Christos, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
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- 2021
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16. Two-Step U-Nets for Brain Tumor Segmentation and Random Forest with Radiomics for Survival Time Prediction
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Kim, Soopil, Luna, Miguel, Chikontwe, Philip, Park, Sang Hyun, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
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- 2020
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17. The Cancer Imaging Phenomics Toolkit (CaPTk): Technical Overview
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Pati, Sarthak, Singh, Ashish, Rathore, Saima, Gastounioti, Aimilia, Bergman, Mark, Ngo, Phuc, Ha, Sung Min, Bounias, Dimitrios, Minock, James, Murphy, Grayson, Li, Hongming, Bhattarai, Amit, Wolf, Adam, Sridaran, Patmaa, Kalarot, Ratheesh, Akbari, Hamed, Sotiras, Aristeidis, Thakur, Siddhesh P., Verma, Ragini, Shinohara, Russell T., Yushkevich, Paul, Fan, Yong, Kontos, Despina, Davatzikos, Christos, Bakas, Spyridon, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
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- 2020
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18. An Integrative Analysis of Image Segmentation and Survival of Brain Tumour Patients
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Starke, Sebastian, Eckert, Carlchristian, Zwanenburg, Alex, Speidel, Stefanie, Löck, Steffen, Leger, Stefan, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Crimi, Alessandro, editor, and Bakas, Spyridon, editor
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- 2020
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19. Machine Learning Methods for Classifying Mammographic Regions Using the Wavelet Transform and Radiomic Texture Features
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Rincón, Jaider Stiven, Castro-Ospina, Andrés E., Narváez, Fabián R., Díaz, Gloria M., Barbosa, Simone Diniz Junqueira, Editorial Board Member, Filipe, Joaquim, Editorial Board Member, Ghosh, Ashish, Editorial Board Member, Kotenko, Igor, Editorial Board Member, Washio, Takashi, Editorial Board Member, Yuan, Junsong, Editorial Board Member, Zhou, Lizhu, Editorial Board Member, Botto-Tobar, Miguel, editor, Pizarro, Guillermo, editor, Zúñiga-Prieto, Miguel, editor, D’Armas, Mayra, editor, and Zúñiga Sánchez, Miguel, editor
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- 2019
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20. Deep Learning Radiomics Algorithm for Gliomas (DRAG) Model: A Novel Approach Using 3D UNET Based Deep Convolutional Neural Network for Predicting Survival in Gliomas
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Baid, Ujjwal, Talbar, Sanjay, Rane, Swapnil, Gupta, Sudeep, Thakur, Meenakshi H., Moiyadi, Aliasgar, Thakur, Siddhesh, Mahajan, Abhishek, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Crimi, Alessandro, editor, Bakas, Spyridon, editor, Kuijf, Hugo, editor, Keyvan, Farahani, editor, Reyes, Mauricio, editor, and van Walsum, Theo, editor
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- 2019
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21. 3D Texture Feature Learning for Noninvasive Estimation of Gliomas Pathological Subtype
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Wu, Guoqing, Wang, Yuanyuan, Yu, Jinhua, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Crimi, Alessandro, editor, Bakas, Spyridon, editor, Kuijf, Hugo, editor, Keyvan, Farahani, editor, Reyes, Mauricio, editor, and van Walsum, Theo, editor
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- 2019
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22. What the radiologist should know about artificial intelligence – an ESR white paper
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European Society of Radiology (ESR)
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Artificial intelligence ,Imaging informatics ,Radiomics ,Ethical issues ,Computer applications ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Abstract This paper aims to provide a review of the basis for application of AI in radiology, to discuss the immediate ethical and professional impact in radiology, and to consider possible future evolution. Even if AI does add significant value to image interpretation, there are implications outside the traditional radiology activities of lesion detection and characterisation. In radiomics, AI can foster the analysis of the features and help in the correlation with other omics data. Imaging biobanks would become a necessary infrastructure to organise and share the image data from which AI models can be trained. AI can be used as an optimising tool to assist the technologist and radiologist in choosing a personalised patient’s protocol, tracking the patient’s dose parameters, providing an estimate of the radiation risks. AI can also aid the reporting workflow and help the linking between words, images, and quantitative data. Finally, AI coupled with CDS can improve the decision process and thereby optimise clinical and radiological workflow.
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- 2019
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23. Multi-planar Spatial-ConvNet for Segmentation and Survival Prediction in Brain Cancer
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Banerjee, Subhashis, Mitra, Sushmita, Shankar, B. Uma, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Crimi, Alessandro, editor, Bakas, Spyridon, editor, Kuijf, Hugo, editor, Keyvan, Farahani, editor, Reyes, Mauricio, editor, and van Walsum, Theo, editor
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- 2019
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24. Multi-stage Association Analysis of Glioblastoma Gene Expressions with Texture and Spatial Patterns
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Elsheikh, Samar S. M., Bakas, Spyridon, Mulder, Nicola J., Chimusa, Emile R., Davatzikos, Christos, Crimi, Alessandro, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Crimi, Alessandro, editor, Bakas, Spyridon, editor, Kuijf, Hugo, editor, Keyvan, Farahani, editor, Reyes, Mauricio, editor, and van Walsum, Theo, editor
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- 2019
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25. What the radiologist should know about artificial intelligence – an ESR white paper
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- 2019
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26. A Radiomics Approach to Computer-Aided Diagnosis with Cardiac Cine-MRI
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Cetin, Irem, Sanroma, Gerard, Petersen, Steffen E., Napel, Sandy, Camara, Oscar, Ballester, Miguel-Angel Gonzalez, Lekadir, Karim, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Weikum, Gerhard, Series Editor, Pop, Mihaela, editor, Sermesant, Maxime, editor, Jodoin, Pierre-Marc, editor, Lalande, Alain, editor, Zhuang, Xiahai, editor, Yang, Guang, editor, Young, Alistair, editor, and Bernard, Olivier, editor
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- 2018
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27. Brain Cancer Imaging Phenomics Toolkit (brain-CaPTk): An Interactive Platform for Quantitative Analysis of Glioblastoma
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Rathore, Saima, Bakas, Spyridon, Pati, Sarthak, Akbari, Hamed, Kalarot, Ratheesh, Sridharan, Patmaa, Rozycki, Martin, Bergman, Mark, Tunc, Birkan, Verma, Ragini, Bilello, Michel, Davatzikos, Christos, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Weikum, Gerhard, Series editor, Crimi, Alessandro, editor, Bakas, Spyridon, editor, Kuijf, Hugo, editor, Menze, Bjoern, editor, and Reyes, Mauricio, editor
- Published
- 2018
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28. Noninvasive identification of SOX9 status using radiomics signatures may help construct personalized treatment strategy in hepatocellular carcinoma.
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Che F, Wei Y, Xu Q, Li Q, Zhang T, Wang LY, Li M, Yuan F, and Song B
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- Adult, Aged, Female, Humans, Male, Middle Aged, Biomarkers, Tumor metabolism, Precision Medicine methods, Retrospective Studies, Sorafenib therapeutic use, Carcinoma, Hepatocellular diagnostic imaging, Carcinoma, Hepatocellular therapy, Contrast Media, Liver Neoplasms diagnostic imaging, Liver Neoplasms therapy, Radiomics, SOX9 Transcription Factor analysis, SOX9 Transcription Factor metabolism, Tomography, X-Ray Computed methods
- Abstract
Objectives: To develop and validate a radiomics-based model for predicting SOX9-positive hepatocellular carcinoma (HCC) using preoperative contrast-enhanced computed tomography (CT) images., Methods: From January 2013 to April 2017, patients with histologically proven HCC who received systemic sorafenib treatment after curative resection were retrospectively enrolled. Radiomic features were extracted from portal venous phase CT images and selected to build a radiomics score using logistic regression analysis. The factors associated with SOX9 expression were selected and combined by univariate and multivariate analyses to establish clinico-liver imaging (CL) model and clinico-liver imaging-radiomics (CLR) model. Diagnostic performance was measured by area under curve (AUC). Overall survival (OS) and recurrence-free survival (RFS) rates were compared using Kaplan-Meier method., Results: A total of 108 patients (training cohort: n = 80; validation cohort: n = 28) were enrolled. Multivariate analyses revealed that the albumin-bilirubin grade and tumor size were significant independent factors for predicting SOX9-positive HCCs and were included in the CL model. The CLR model integrating the radiomics score with albumin-bilirubin grade and tumor size showed better discriminative performance than the CL model with AUCs of 0.912 and 0.790 in the training and validation cohorts. Survival curves for RFS and OS showed that SOX9 expression was closely related to the prognosis of HCC patients. RFS and OS rates were significantly lower in patients with SOX9-positive than SOX9-negative (51.02% vs. 75.00% at 1-year RFS rates; 76.92% vs. 94.94% at 2-year OS rates)., Conclusion: Radiomics signatures may serve as noninvasive predictors for SOX9 status evaluation in patients with HCC and may aid in constructing individualized treatment strategies., (© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2024
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29. Clinical applications of cardiac computed tomography: a consensus paper of the European Association of Cardiovascular Imaging—part II
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Gianluca Pontone, Alexia Rossi, Marco Guglielmo, Marc R Dweck, Oliver Gaemperli, Koen Nieman, Francesca Pugliese, Pal Maurovich-Horvat, Alessia Gimelli, Bernard Cosyns, Stephan Achenbach, Clinical sciences, Cardio-vascular diseases, and Cardiology
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Consensus ,Cardiac computed tomography ,Radiomics ,Computed Tomography Angiography ,Coronary Stenosis ,Coronary Artery Disease ,General Medicine ,EACVI Document ,Coronary Angiography ,artificial intelligence ,Coronary Vessels ,myocardial ischaemia ,Fractional Flow Reserve, Myocardial ,plaque imaging ,FFRCT ,coronary computed tomography angiography (CCTA) ,Predictive Value of Tests ,FRACTIONAL FLOW RESERVE ,CT perfusion imaging ,Humans ,Radiology, Nuclear Medicine and imaging ,Structural heart disease ,Cardiology and Cardiovascular Medicine ,cardiomyopathy - Abstract
Cardiac computed tomography (CT) was initially developed as a non-invasive diagnostic tool to detect and quantify coronary stenosis. Thanks to the rapid technological development, cardiac CT has become a comprehensive imaging modality which offers anatomical and functional information to guide patient management. This is the second of two complementary documents endorsed by the European Association of Cardiovascular Imaging aiming to give updated indications on the appropriate use of cardiac CT in different clinical scenarios. In this article, emerging CT technologies and biomarkers, such as CT-derived fractional flow reserve, perfusion imaging, and pericoronary adipose tissue attenuation, are described. In addition, the role of cardiac CT in the evaluation of atherosclerotic plaque, cardiomyopathies, structural heart disease, and congenital heart disease is revised.
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- 2022
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30. CT and MRI of abdominal cancers: current trends and perspectives in the era of radiomics and artificial intelligence.
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Barat M, Pellat A, Hoeffel C, Dohan A, Coriat R, Fishman EK, Nougaret S, Chu L, and Soyer P
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- Humans, Artificial Intelligence, Magnetic Resonance Imaging, Biomarkers, Tomography, X-Ray Computed, Tumor Microenvironment, Radiomics, Abdominal Neoplasms diagnostic imaging
- Abstract
Abdominal cancers continue to pose daily challenges to clinicians, radiologists and researchers. These challenges are faced at each stage of abdominal cancer management, including early detection, accurate characterization, precise assessment of tumor spread, preoperative planning when surgery is anticipated, prediction of tumor aggressiveness, response to therapy, and detection of recurrence. Technical advances in medical imaging, often in combination with imaging biomarkers, show great promise in addressing such challenges. Information extracted from imaging datasets owing to the application of radiomics can be used to further improve the diagnostic capabilities of imaging. However, the analysis of the huge amount of data provided by these advances is a difficult task in daily practice. Artificial intelligence has the potential to help radiologists in all these challenges. Notably, the applications of AI in the field of abdominal cancers are expanding and now include diverse approaches for cancer detection, diagnosis and classification, genomics and detection of genetic alterations, analysis of tumor microenvironment, identification of predictive biomarkers and follow-up. However, AI currently has some limitations that need further refinement for implementation in the clinical setting. This review article sums up recent advances in imaging of abdominal cancers in the field of image/data acquisition, tumor detection, tumor characterization, prognosis, and treatment response evaluation., (© 2023. The Author(s) under exclusive licence to Japan Radiological Society.)
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- 2024
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31. Towards reproducible radiomics research: introduction of a database for radiomics studies.
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Akinci D'Antonoli T, Cuocolo R, Baessler B, and Pinto Dos Santos D
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- Humans, Reproducibility of Results, Retrospective Studies, Radiography, Artificial Intelligence, Radiomics
- Abstract
Objectives: To investigate the model-, code-, and data-sharing practices in the current radiomics research landscape and to introduce a radiomics research database., Methods: A total of 1254 articles published between January 1, 2021, and December 31, 2022, in leading radiology journals (European Radiology, European Journal of Radiology, Radiology, Radiology: Artificial Intelligence, Radiology: Cardiothoracic Imaging, Radiology: Imaging Cancer) were retrospectively screened, and 257 original research articles were included in this study. The categorical variables were compared using Fisher's exact tests or chi-square test and numerical variables using Student's t test with relation to the year of publication., Results: Half of the articles (128 of 257) shared the model by either including the final model formula or reporting the coefficients of selected radiomics features. A total of 73 (28%) models were validated on an external independent dataset. Only 16 (6%) articles shared the data or used publicly available open datasets. Similarly, only 20 (7%) of the articles shared the code. A total of 7 (3%) articles both shared code and data. All collected data in this study is presented in a radiomics research database (RadBase) and could be accessed at https://github.com/EuSoMII/RadBase ., Conclusion: According to the results of this study, the majority of published radiomics models were not technically reproducible since they shared neither model nor code and data. There is still room for improvement in carrying out reproducible and open research in the field of radiomics., Clinical Relevance Statement: To date, the reproducibility of radiomics research and open science practices within the radiomics research community are still very low. Ensuring reproducible radiomics research with model-, code-, and data-sharing practices will facilitate faster clinical translation., Key Points: • There is a discrepancy between the number of published radiomics papers and the clinical implementation of these published radiomics models. • The main obstacle to clinical implementation is the lack of model-, code-, and data-sharing practices. • In order to translate radiomics research into clinical practice, the radiomics research community should adopt open science practices., (© 2023. The Author(s).)
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- 2024
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32. Radiomics in the characterization of lipid-poor adrenal adenomas at unenhanced CT: time to look beyond usual density metrics.
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Feliciani G, Serra F, Menghi E, Ferroni F, Sarnelli A, Feo C, Zatelli MC, Ambrosio MR, Giganti M, and Carnevale A
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- Humans, Benchmarking, Tomography, X-Ray Computed, Lipids, Retrospective Studies, Radiomics, Adrenocortical Adenoma
- Abstract
Objectives: In this study, we developed a radiomic signature for the classification of benign lipid-poor adenomas, which may potentially help clinicians limit the number of unnecessary investigations in clinical practice. Indeterminate adrenal lesions of benign and malignant nature may exhibit different values of key radiomics features., Methods: Patients who had available histopathology reports and a non-contrast-enhanced CT scan were included in the study. Radiomics feature extraction was done after the adrenal lesions were contoured. The primary feature selection and prediction performance scores were calculated using the least absolute shrinkage and selection operator (LASSO). To eliminate redundancy, the best-performing features were further examined using the Pearson correlation coefficient, and new predictive models were created., Results: This investigation covered 50 lesions in 48 patients. After LASSO-based radiomics feature selection, the test dataset's 30 iterations of logistic regression models produced an average performance of 0.72. The model with the best performance, made up of 13 radiomics features, had an AUC of 0.99 in the training phase and 1.00 in the test phase. The number of features was lowered to 5 after performing Pearson's correlation to prevent overfitting. The final radiomic signature trained a number of machine learning classifiers, with an average AUC of 0.93., Conclusions: Including more radiomics features in the identification of adenomas may improve the accuracy of NECT and reduce the need for additional imaging procedures and clinical workup, according to this and other recent radiomics studies that have clear points of contact with current clinical practice., Clinical Relevance Statement: The study developed a radiomic signature using unenhanced CT scans for classifying lipid-poor adenomas, potentially reducing unnecessary investigations that scored a final accuracy of 93%., Key Points: • Radiomics has potential for differentiating lipid-poor adenomas and avoiding unnecessary further investigations. • Quadratic mean, strength, maximum 3D diameter, volume density, and area density are promising predictors for adenomas. • Radiomics models reach high performance with average AUC of 0.95 in the training phase and 0.72 in the test phase., (© 2023. The Author(s).)
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- 2024
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33. Why did European Radiology reject my radiomic biomarker paper? How to correctly evaluate imaging biomarkers in a clinical setting
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Yves Menu, Susan Mallett, Steve Halligan, University College of London [London] (UCL), Service de Radiologie [CHU Saint-Antoine], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-CHU Saint-Antoine [AP-HP], and Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU)-Sorbonne Université (SU)
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Research design ,Diagnostic Imaging ,medicine.medical_specialty ,Imaging biomarker ,[SDV.IB.IMA]Life Sciences [q-bio]/Bioengineering/Imaging ,Patient characteristics ,Context (language use) ,Overfitting ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Experimental ,0302 clinical medicine ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Model development ,030212 general & internal medicine ,Neuroradiology ,Radiomics ,business.industry ,Publications ,General Medicine ,3. Good health ,Radiography ,Biomarker (medicine) ,Radiology ,business ,Biomarkers - Abstract
Abstract This review explains in simple terms, accessible to the non-statistician, general principles regarding the correct research methods to develop and then evaluate imaging biomarkers in a clinical setting, including radiomic biomarkers. The distinction between diagnostic and prognostic biomarkers is made and emphasis placed on the need to assess clinical utility within the context of a multivariable model. Such models should not be restricted to imaging biomarkers and must include relevant disease and patient characteristics likely to be clinically useful. Biomarker utility is based on whether its addition to the basic clinical model improves diagnosis or prediction. Approaches to both model development and evaluation are explained and the need for adequate amounts of representative data stressed so as to avoid underpowering and overfitting. Advice is provided regarding how to report the research correctly. Key Points • Imaging biomarker research is common but methodological errors are encountered frequently that may mean the research is not clinically useful. • The clinical utility of imaging biomarkers is best assessed by their additive effect on multivariable models based on clinical factors known to be important. • The data used to develop such models should be sufficient for the number of variables investigated and the model should be evaluated, preferably using data unrelated to development.
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- 2021
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34. Self-reported checklists and quality scoring tools in radiomics: a meta-research.
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Kocak, Burak, Akinci D'Antonoli, Tugba, Ates Kus, Ece, Keles, Ali, Kala, Ahmet, Kose, Fadime, Kadioglu, Mehmet, Solak, Sila, Sunman, Seyma, and Temiz, Zisan Hayriye
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RADIOMICS ,COMPUTER-assisted image analysis (Medicine) ,ARTIFICIAL intelligence ,REPRODUCIBLE research ,SAMPLE size (Statistics) - Abstract
Objective: To evaluate the use of reporting checklists and quality scoring tools for self-reporting purposes in radiomics literature. Methods: Literature search was conducted in PubMed (date, April 23, 2023). The radiomics literature was sampled at random after a sample size calculation with a priori power analysis. A systematic assessment for self-reporting, including the use of documentation such as completed checklists or quality scoring tools, was conducted in original research papers. These eligible papers underwent independent evaluation by a panel of nine readers, with three readers assigned to each paper. Automatic annotation was used to assist in this process. Then, a detailed item-by-item confirmation analysis was carried out on papers with checklist documentation, with independent evaluation of two readers. Results: The sample size calculation yielded 117 papers. Most of the included papers were retrospective (94%; 110/117), single-center (68%; 80/117), based on their private data (89%; 104/117), and lacked external validation (79%; 93/117). Only seven papers (6%) had at least one self-reported document (Radiomics Quality Score (RQS), Transparent Reporting of a multivariable prediction model for Individual Prognosis Or Diagnosis (TRIPOD), or Checklist for Artificial Intelligence in Medical Imaging (CLAIM)), with a statistically significant binomial test (p < 0.001). Median rate of confirmed items for all three documents was 81% (interquartile range, 6). For quality scoring tools, documented scores were higher than suggested scores, with a mean difference of − 7.2 (standard deviation, 6.8). Conclusion: Radiomic publications often lack self-reported checklists or quality scoring tools. Even when such documents are provided, it is essential to be cautious, as the accuracy of the reported items or scores may be questionable. Clinical relevance statement: Current state of radiomic literature reveals a notable absence of self-reporting with documentation and inaccurate reporting practices. This critical observation may serve as a catalyst for motivating the radiomics community to adopt and utilize such tools appropriately, thereby fostering rigor, transparency, and reproducibility of their research, moving the field forward. Key Points: • In radiomics literature, there has been a notable absence of self-reporting with documentation. • Even if such documents are provided, it is critical to exercise caution because the accuracy of the reported items or scores may be questionable. • Radiomics community needs to be motivated to adopt and appropriately utilize the reporting checklists and quality scoring tools. [ABSTRACT FROM AUTHOR]
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- 2024
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35. The European Federation of Organisations for Medical Physics (EFOMP) White Paper : Big data and deep learning in medical imaging and in relation to medical physics profession
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Kortesniemi, Mika, Tsapaki, Virginia, Trianni, Annalisa, Russo, Paolo, Maas, Ad, Källman, Hans-Erik, Brambilla, Marco, Damilakis, John, Department of Diagnostics and Therapeutics, Clinicum, and HUS Medical Imaging Center
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WILL ,COMPUTER-AIDED DETECTION ,AUTOMATED SEGMENTATION ,FUTURE ,CONVOLUTIONAL NEURAL-NETWORKS ,RADIOMICS ,3126 Surgery, anesthesiology, intensive care, radiology - Abstract
Big data and deep learning will profoundly change various areas of professions and research in the future. This will also happen in medicine and medical imaging in particular. As medical physicists, we should pursue beyond the concept of technical quality to extend our methodology and competence towards measuring and optimising the diagnostic value in terms of how it is connected to care outcome. Functional implementation of such methodology requires data processing utilities starting from data collection and management and culminating in the data analysis methods. Data quality control and validation are prerequisites for the deep learning application in order to provide reliable further analysis, classification, interpretation, probabilistic and predictive modelling from the vast heterogeneous big data. Challenges in practical data analytics relate to both horizontal and longitudinal analysis aspects. Quantitative aspects of data validation, quality control, physically meaningful measures, parameter connections and system modelling for the future artificial intelligence (AI) methods are positioned firmly in the field of Medical Physics profession. It is our interest to ensure that our professional education, continuous training and competence will follow this significant global development.
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- 2018
36. Clinical applications of cardiac computed tomography: a consensus paper of the European Association of Cardiovascular Imaging—part II.
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Pontone, Gianluca, Rossi, Alexia, Guglielmo, Marco, Dweck, Marc R, Gaemperli, Oliver, Nieman, Koen, Pugliese, Francesca, Maurovich-Horvat, Pal, Gimelli, Alessia, Cosyns, Bernard, and Achenbach, Stephan
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CONSENSUS (Social sciences) ,CARDIOMYOPATHIES ,CARDIOVASCULAR diseases ,ACUTE coronary syndrome ,CONGENITAL heart disease ,RADIONUCLIDE imaging ,DIAGNOSTIC imaging ,CORONARY artery disease ,CALCINOSIS ,COMPUTED tomography ,PERFUSION ,HEART diseases - Abstract
Cardiac computed tomography (CT) was initially developed as a non-invasive diagnostic tool to detect and quantify coronary stenosis. Thanks to the rapid technological development, cardiac CT has become a comprehensive imaging modality which offers anatomical and functional information to guide patient management. This is the second of two complementary documents endorsed by the European Association of Cardiovascular Imaging aiming to give updated indications on the appropriate use of cardiac CT in different clinical scenarios. In this article, emerging CT technologies and biomarkers, such as CT-derived fractional flow reserve, perfusion imaging, and pericoronary adipose tissue attenuation, are described. In addition, the role of cardiac CT in the evaluation of atherosclerotic plaque, cardiomyopathies, structural heart disease, and congenital heart disease is revised. [ABSTRACT FROM AUTHOR]
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- 2022
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37. The role of 'artificial intelligence, machine learning, virtual reality, and radiomics' in PCNL: a review of publication trends over the last 30 years.
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Nedbal, Carlotta, Cerrato, Clara, Jahrreiss, Victoria, Castellani, Daniele, Pietropaolo, Amelia, Galosi, Andrea Benedetto, and Somani, Bhaskar Kumar
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Introduction: We wanted to analyze the trend of publications in a period of 30years from 1994 to 2023, on the application of ‘artificial intelligence (AI), machine learning (ML), virtual reality (VR), and radiomics in percutaneous nephrolithotomy (PCNL)’. We conducted this study by looking at published papers associated with AI and PCNL procedures, including simulation training, with preoperative and intraoperative applications. Materials and Methods: Although MeSH terms research on the PubMed database, we performed a comprehensive review of the literature from 1994 to 2023 for all published papers on ‘AI, ML, VR, and radiomics’ in ‘PCNL’, with papers in all languages included. Papers were divided into three 10-year periods: Period 1 (1994–2003), Period 2 (2004–2013), and Period 3 (2014–2023). Results: Over a 30-year timeframe, 143 papers have been published on the subject with 116 (81%) published in the last decade, with a relative increase from Period 2 to Period 3 of +427% (p=0.0027). There was a gradual increase in areas such as automated diagnosis of larger stones, automated intraoperative needle targeting, and VR simulators in surgical planning and training. This increase was most marked in Period 3 with automated targeting with 52 papers (45%), followed by the application of AI, ML, and radiomics in predicting operative outcomes (22%, n=26) and VR for simulation (18%, n=21). Papers on technological innovations in PCNL (n=9), intelligent construction of personalized protocols (n=6), and automated diagnosis (n=2) accounted for 15% of publications. A rise in automated targeting for PCNL and PCNL training between Period 2 and Period 3 was +247% (p=0.0055) and +200% (p=0.0161), respectively. Conclusion: An interest in the application of AI in PCNL procedures has increased in the last 30years, and a steep rise has been witnessed in the last 10years. As new technologies are developed, their application in devices for training and automated systems for precise renal puncture and outcome prediction seems to play a leading role in modern-day AI-based publication trends on PCNL. [ABSTRACT FROM AUTHOR]
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- 2023
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38. 3D‐printed iodine‐ink CT phantom for radiomics feature extraction ‐ advantages and challenges.
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Bach, Michael, Aberle, Christoph, Depeursinge, Adrien, Jimenez‐del‐Toro, Oscar, Schaer, Roger, Flouris, Kyriakos, Konukoglu, Ender, Müller, Henning, Stieltjes, Bram, and Obmann, Markus M.
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IMAGING phantoms ,FEATURE extraction ,RADIOMICS ,COMPUTED tomography ,NO-tillage ,DISTRIBUTION (Probability theory) - Abstract
Background: To test and validate novel CT techniques, such as texture analysis in radiomics, repeat measurements are required. Current anthropomorphic phantoms lack fine texture and true anatomic representation. 3D‐printing of iodinated ink on paper is a promising phantom manufacturing technique. Previously acquired or artificially created CT data can be used to generate realistic phantoms. Purpose: To present the design process of an anthropomorphic 3D‐printed iodine ink phantom, highlighting the different advantages and pitfalls in its use. To analyze the phantom's X‐ray attenuation properties, and the influences of the printing process on the imaging characteristics, by comparing it to the original input dataset. Methods: Two patient CT scans and artificially generated test patterns were combined in a single dataset for phantom printing and cropped to a size of 26 × 19 × 30 cm3. This DICOM dataset was printed on paper using iodinated ink. The phantom was CT‐scanned and compared to the original image dataset used for printing the phantom. The water‐equivalent diameter of the phantom was compared to that of a patient cohort (N = 104). Iodine concentrations in the phantom were measured using dual‐energy CT. 86 radiomics features were extracted from 10 repeat phantom scans and the input dataset. Features were compared using a histogram analysis and a PCA individually and overall, respectively. The frequency content was compared using the normalized spectrum modulus. Results: Low density structures are depicted incorrectly, while soft tissue structures show excellent visual accordance with the input dataset. Maximum deviations of around 30 HU between the original dataset and phantom HU values were observed. The phantom has X‐ray attenuation properties comparable to a lightweight adult patient (∼54 kg, BMI 19 kg/m2). Iodine concentrations in the phantom varied between 0 and 50 mg/ml. PCA of radiomics features shows different tissue types separate in similar areas of PCA representation in the phantom scans as in the input dataset. Individual feature analysis revealed systematic shift of first order radiomics features compared to the original dataset, while some higher order radiomics features did not. The normalized frequency modulus |f(ω)| of the phantom data agrees well with the original data. However, all frequencies systematically occur more frequently in the phantom compared to the maximum of the spectrum modulus than in the original data set, especially for mid‐frequencies (e.g., for ω = 0.3942 mm−1, |f(ω)|original = 0.09 * |fmax|original and |f(ω)|phantom = 0.12 * |fmax|phantom). Conclusions: 3D‐iodine‐ink‐printing technology can be used to print anthropomorphic phantoms with a water‐equivalent diameter of a lightweight adult patient. Challenges include small residual air enclosures and the fidelity of HU values. For soft tissue, there is a good agreement between the HU values of the phantom and input data set. Radiomics texture features of the phantom scans are similar to the input data set, but systematic shifts of radiomics features in first order features, due to differences in HU values, need to be considered. The paper substrate influences the spatial frequency distribution of the phantom scans. This phantom type is of very limited use for dual‐energy CT analyses. [ABSTRACT FROM AUTHOR]
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- 2023
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39. Radiomics in precision medicine for colorectal cancer: a bibliometric analysis (2013–2023).
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Li, Hao, Zhuang, Yupei, Yuan, Weichen, Gu, Yutian, Dai, Xinyan, Li, Muhan, Chen, Haibin, and Zhou, Hongguang
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COMPUTER-assisted image analysis (Medicine) ,BIBLIOMETRICS ,TEXTURE analysis (Image processing) ,IMAGE analysis ,RADIOMICS - Abstract
Background: The incidence and mortality of colorectal cancer (CRC) have been rising steadily. Early diagnosis and precise treatment are essential for improving patient survival outcomes. Over the past decade, the integration of artificial intelligence (AI) and medical imaging technologies has positioned radiomics as a critical area of research in the diagnosis, treatment, and prognosis of CRC. Methods: We conducted a comprehensive review of CRC-related radiomics literature published between 1 January 2013 and 31 December 2023 using the Web of Science Core Collection database. Bibliometric tools such as Bibliometrix, VOSviewer, and CiteSpace were employed to perform an in-depth bibliometric analysis. Results: Our search yielded 1,226 publications, revealing a consistent annual growth in CRC radiomics research, with a significant rise after 2019. China led in publication volume (406 papers), followed by the United States (263 papers), whereas the United States dominated in citation numbers. Notable institutions included General Electric, Harvard University, University of London, Maastricht University, and the Chinese Academy of Sciences. Prominent researchers in this field are Tian J from the Chinese Academy of Sciences, with the highest publication count, and Ganeshan B from the University of London, with the most citations. Journals leading in publication and citation counts are Frontiers in Oncology and Radiology. Keyword and citation analysis identified deep learning, texture analysis, rectal cancer, image analysis, and management as prevailing research themes. Additionally, recent trends indicate the growing importance of AI and multi-omics integration, with a focus on improving precision medicine applications in CRC. Emerging keywords such as deep learning and AI have shown rapid growth in citation bursts over the past 3 years, reflecting a shift toward more advanced technological applications. Conclusions: Radiomics plays a crucial role in the clinical management of CRC, providing valuable insights for precision medicine. It significantly contributes to predicting molecular biomarkers, assessing tumor aggressiveness, and monitoring treatment efficacy. Future research should prioritize advancing AI algorithms, enhancing multi-omics data integration, and further expanding radiomics applications in CRC precision medicine. [ABSTRACT FROM AUTHOR]
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- 2024
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40. Exploring the potential of Radiomics in identification and treatment of lung cancer: A systematic evaluation.
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Balekai, Raviteja and Holi, Mallikarjun S.
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RADIOMICS ,LUNG cancer ,POSITRON emission tomography ,COMPUTED tomography ,CANCER treatment - Abstract
Lung cancer is one of the most serious and life-threatening diseases in the world. Imaging modalities like computed tomography (CT) and Positron emission tomography (PET) play a crucial role in cancer diagnosis. Radiomics is an emerging field in medical imaging that uses advanced computational algorithms to extract quantitative features from medical images. Machine learning makes radiomics method of cancer diagnosis easier and more efficient by automating the process of feature selection and classification, which can save time and reduce the risk of human error in the diagnosis. It has the potential to revolutionize cancer detection by providing clinicians with valuable insights into tumour biology that can help in clinical decision-making and improve patient care outcomes. In this review paper, we primarily summarize the workflow of radiomics studies in the context of lung cancer and discussed the practical uses of radiomics in lung cancer, such as malignant tumour identification, classification of histologic subtypes, identification of tumour genotypes, and prediction of treatment response. Additionally, the paper addresses the key challenges associated with the clinical transition of radiomics, the limitations of current approaches, and potential future directions in this field. [ABSTRACT FROM AUTHOR]
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- 2024
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41. Reproducibility of radiomics quality score: an intra- and inter-rater reliability study.
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Akinci D'Antonoli, Tugba, Cavallo, Armando Ugo, Vernuccio, Federica, Stanzione, Arnaldo, Klontzas, Michail E., Cannella, Roberto, Ugga, Lorenzo, Baran, Agah, Fanni, Salvatore Claudio, Petrash, Ekaterina, Ambrosini, Ilaria, Cappellini, Luca Alessandro, van Ooijen, Peter, Kotter, Elmar, Pinto dos Santos, Daniel, and Cuocolo, Renato
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RADIOMICS ,EVIDENCE gaps ,RESEARCH implementation ,TOTAL quality management - Abstract
Objectives: To investigate the intra- and inter-rater reliability of the total radiomics quality score (RQS) and the reproducibility of individual RQS items' score in a large multireader study. Methods: Nine raters with different backgrounds were randomly assigned to three groups based on their proficiency with RQS utilization: Groups 1 and 2 represented the inter-rater reliability groups with or without prior training in RQS, respectively; group 3 represented the intra-rater reliability group. Thirty-three original research papers on radiomics were evaluated by raters of groups 1 and 2. Of the 33 papers, 17 were evaluated twice with an interval of 1 month by raters of group 3. Intraclass coefficient (ICC) for continuous variables, and Fleiss' and Cohen's kappa (k) statistics for categorical variables were used. Results: The inter-rater reliability was poor to moderate for total RQS (ICC 0.30–055, p < 0.001) and very low to good for item's reproducibility (k − 0.12 to 0.75) within groups 1 and 2 for both inexperienced and experienced raters. The intra-rater reliability for total RQS was moderate for the less experienced rater (ICC 0.522, p = 0.009), whereas experienced raters showed excellent intra-rater reliability (ICC 0.91–0.99, p < 0.001) between the first and second read. Intra-rater reliability on RQS items' score reproducibility was higher and most of the items had moderate to good intra-rater reliability (k − 0.40 to 1). Conclusions: Reproducibility of the total RQS and the score of individual RQS items is low. There is a need for a robust and reproducible assessment method to assess the quality of radiomics research. Clinical relevance statement: There is a need for reproducible scoring systems to improve quality of radiomics research and consecutively close the translational gap between research and clinical implementation. Key Points: • Radiomics quality score has been widely used for the evaluation of radiomics studies. • Although the intra-rater reliability was moderate to excellent, intra- and inter-rater reliability of total score and point-by-point scores were low with radiomics quality score. • A robust, easy-to-use scoring system is needed for the evaluation of radiomics research. [ABSTRACT FROM AUTHOR]
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- 2024
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42. CT and MRI radiomics of bone and soft-tissue sarcomas: an updated systematic review of reproducibility and validation strategies.
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Gitto, Salvatore, Cuocolo, Renato, Huisman, Merel, Messina, Carmelo, Albano, Domenico, Omoumi, Patrick, Kotter, Elmar, Maas, Mario, Van Ooijen, Peter, and Sconfienza, Luca Maria
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OSTEOSARCOMA ,RADIOMICS ,MAGNETIC resonance imaging ,MODEL validation ,MACHINE learning - Abstract
Objective: To systematically review radiomic feature reproducibility and model validation strategies in recent studies dealing with CT and MRI radiomics of bone and soft-tissue sarcomas, thus updating a previous version of this review which included studies published up to 2020. Methods: A literature search was conducted on EMBASE and PubMed databases for papers published between January 2021 and March 2023. Data regarding radiomic feature reproducibility and model validation strategies were extracted and analyzed. Results: Out of 201 identified papers, 55 were included. They dealt with radiomics of bone (n = 23) or soft-tissue (n = 32) tumors. Thirty-two (out of 54 employing manual or semiautomatic segmentation, 59%) studies included a feature reproducibility analysis. Reproducibility was assessed based on intra/interobserver segmentation variability in 30 (55%) and geometrical transformations of the region of interest in 2 (4%) studies. At least one machine learning validation technique was used for model development in 34 (62%) papers, and K-fold cross-validation was employed most frequently. A clinical validation of the model was reported in 38 (69%) papers. It was performed using a separate dataset from the primary institution (internal test) in 22 (40%), an independent dataset from another institution (external test) in 14 (25%) and both in 2 (4%) studies. Conclusions: Compared to papers published up to 2020, a clear improvement was noted with almost double publications reporting methodological aspects related to reproducibility and validation. Larger multicenter investigations including external clinical validation and the publication of databases in open-access repositories could further improve methodology and bring radiomics from a research area to the clinical stage. Critical relevance statement: An improvement in feature reproducibility and model validation strategies has been shown in this updated systematic review on radiomics of bone and soft-tissue sarcomas, highlighting efforts to enhance methodology and bring radiomics from a research area to the clinical stage. Key points: • 2021–2023 radiomic studies on CT and MRI of musculoskeletal sarcomas were reviewed. • Feature reproducibility was assessed in more than half (59%) of the studies. • Model clinical validation was performed in 69% of the studies. • Internal (44%) and/or external (29%) test datasets were employed for clinical validation. [ABSTRACT FROM AUTHOR]
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- 2024
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43. The application of radiomics in cancer imaging with a focus on lung cancer, renal cell carcinoma, gastrointestinal cancer, and head and neck cancer: A systematic review
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Fusco, Roberta, Granata, Vincenza, Setola, Sergio Venanzio, Trovato, Piero, Galdiero, Roberta, Mattace Raso, Mauro, Maio, Francesca, Porto, Annamaria, Pariante, Paolo, Cerciello, Vincenzo, Sorgente, Eugenio, Pecori, Biagio, Castaldo, Mimma, Izzo, Francesco, and Petrillo, Antonella
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- 2025
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44. Machine learning model based on radiomics features for AO/OTA classification of pelvic fractures on pelvic radiographs.
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Park, Jun Young, Lee, Seung Hwan, Kim, Young Jae, Kim, Kwang Gi, and Lee, Gil Jae
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PELVIC fractures ,NAIVE Bayes classification ,RECEIVER operating characteristic curves ,RADIOMICS ,MACHINE learning ,RADIOGRAPHS ,FEATURE selection ,KEGEL exercises - Abstract
Depending on the degree of fracture, pelvic fracture can be accompanied by vascular damage, and in severe cases, it may progress to hemorrhagic shock. Pelvic radiography can quickly diagnose pelvic fractures, and the Association for Osteosynthesis Foundation and Orthopedic Trauma Association (AO/OTA) classification system is useful for evaluating pelvic fracture instability. This study aimed to develop a radiomics-based machine-learning algorithm to quickly diagnose fractures on pelvic X-ray and classify their instability. data used were pelvic anteroposterior radiographs of 990 adults over 18 years of age diagnosed with pelvic fractures, and 200 normal subjects. A total of 93 features were extracted based on radiomics:18 first-order, 24 GLCM, 16 GLRLM, 16 GLSZM, 5 NGTDM, and 14 GLDM features. To improve the performance of machine learning, the feature selection methods RFE, SFS, LASSO, and Ridge were used, and the machine learning models used LR, SVM, RF, XGB, MLP, KNN, and LGBM. Performance measurement was evaluated by area under the curve (AUC) by analyzing the receiver operating characteristic curve. The machine learning model was trained based on the selected features using four feature-selection methods. When the RFE feature selection method was used, the average AUC was higher than that of the other methods. Among them, the combination with the machine learning model SVM showed the best performance, with an average AUC of 0.75±0.06. By obtaining a feature-importance graph for the combination of RFE and SVM, it is possible to identify features with high importance. The AO/OTA classification of normal pelvic rings and pelvic fractures on pelvic AP radiographs using a radiomics-based machine learning model showed the highest AUC when using the SVM classification combination. Further research on the radiomic features of each part of the pelvic bone constituting the pelvic ring is needed. [ABSTRACT FROM AUTHOR]
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- 2024
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45. A Heuristic Radiomics Feature SelectionMethod Based on Frequency Iteration andMulti-Supervised TrainingMode.
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Zhigao Zeng, Aoting Tang, Shengqiu Yi, Xinpan Yuan, and Yanhui Zhu
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Radiomics is a non-invasive method for extracting quantitative and higher-dimensional features from medical images for diagnosis. It has received great attention due to its huge application prospects in recent years. We can know that the number of features selected by the existing radiomics feature selectionmethods is basically about ten. In this paper, a heuristic feature selection method based on frequency iteration and multiple supervised training mode is proposed. Based on the combination between features, it decomposes all features layer by layer to select the optimal features for each layer, then fuses the optimal features to form a local optimal group layer by layer and iterates to the global optimal combination finally. Compared with the currentmethod with the best prediction performance in the three data sets, thismethod proposed in this paper can reduce the number of features fromabout ten to about three without losing classification accuracy and even significantly improving classification accuracy. The proposed method has better interpretability and generalization ability, which gives it great potential in the feature selection of radiomics. [ABSTRACT FROM AUTHOR]
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- 2024
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46. Delta magnetic resonance imaging radiomics features‑based nomogram predicts long‑term efficacy after induction chemotherapy in locoregionally advanced nasopharyngeal carcinoma.
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Pan GS, Sun XM, Kong FF, Wang JZ, He XY, Lu XG, Hu CS, Dong SX, and Ying HM
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- Adult, Aged, Female, Humans, Male, Middle Aged, Prognosis, Treatment Outcome, Induction Chemotherapy methods, Magnetic Resonance Imaging methods, Nasopharyngeal Carcinoma diagnostic imaging, Nasopharyngeal Carcinoma drug therapy, Nasopharyngeal Carcinoma mortality, Nasopharyngeal Carcinoma radiotherapy, Nasopharyngeal Neoplasms diagnostic imaging, Nasopharyngeal Neoplasms drug therapy, Nasopharyngeal Neoplasms mortality, Nasopharyngeal Neoplasms radiotherapy, Nomograms, Radiomics
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Purpose: To establish and validate a delta-radiomics-based model for predicting progression-free survival (PFS) in patients with locoregionally advanced nasopharyngeal carcinoma (LA-NPC) following induction chemotherapy (IC)., Methods and Materials: A total of 250 LA-NPC patients (training cohort: n = 145; validation cohort: n = 105) were enrolled. Radiomic features were extracted from MRI scans taken before and after IC, and changes in these features were calculated. Following feature selection, a delta-radiomics signature was constructed using LASSO-Cox regression analysis. A prognostic nomogram incorporating independent clinical indicators and the delta-radiomics signature was developed and assessed for calibration and discrimination. Risk stratification by the nomogram was evaluated using Kaplan-Meier methods., Results: The delta-radiomics signature, consisting of 12 features, was independently associated with prognosis. The nomogram, integrating the delta-radiomics signature and clinical factors demonstrated excellent calibration and discrimination. The model achieved a Harrell's concordance index (C-index) of 0.848 in the training cohort and 0.820 in the validation cohort. Risk stratification identified two groups with significantly different PFS rates. The three-year PFS for high-risk patients who received concurrent chemoradiotherapy (CCRT) or radiotherapy plus adjuvant chemotherapy (RT+AC) after IC was significantly higher than for those who received RT alone, reaching statistical significance. In contrast, for low-risk patients, the three-year PFS after IC was slightly higher for those who received CCRT or RT+AC compared to those who received RT alone; however, this difference did not reach statistical significance., Conclusions: Our delta MRI-based radiomics model could be useful for predicting PFS and may guide subsequent treatment decisions after IC in LA-NPC., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)
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- 2024
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47. Differential diagnostic value of radiomics models in benign versus malignant vertebral compression fractures: A systematic review and meta-analysis.
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Zheng J, Liu W, Chen J, Sun Y, Chen C, Li J, Yi C, Zeng G, Chen Y, and Song W
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- Humans, Diagnosis, Differential, Sensitivity and Specificity, Fractures, Compression diagnostic imaging, Fractures, Compression etiology, Radiomics, Spinal Fractures diagnostic imaging, Spinal Fractures etiology, Spinal Neoplasms diagnostic imaging, Spinal Neoplasms complications
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Purpose: Early diagnosis of benign and malignant vertebral compression fractures by analyzing imaging data is crucial to guide treatment and assess prognosis, and the development of radiomics made it an alternative option to biopsy examination. This systematic review and meta-analysis was conducted with the purpose of quantifying the diagnostic efficacy of radiomics models in distinguishing between benign and malignant vertebral compression fractures., Methods: Searching on PubMed, Embase, Web of Science and Cochrane Library was conducted to identify eligible studies published before September 23, 2023. After evaluating for methodological quality and risk of bias using the Radiomics Quality Score (RQS) and the Quality Assessment of Diagnostic Accuracy Studies-2 (QUADAS-2), we selected studies providing confusion matrix results to be included in random-effects meta-analysis., Results: A total of sixteen articles, involving 1,519 vertebrae with pathological-diagnosed tumor infiltration, were included in our meta-analysis. The combined sensitivity and specificity of the top-performing models were 0.92 (95 % CI: 0.87-0.96) and 0.93 (95 % CI: 0.88-0.96), respectively. Their AUC was 0.97 (95 % CI: 0.96-0.99). By contrast, radiologists' combined sensitivity was 0.90 (95 %CI: 0.75-0.97) and specificity was 0.92 (95 %CI: 0.67-0.98). The AUC was 0.96 (95 %CI: 0.94-0.97). Subsequent subgroup analysis and sensitivity test suggested that part of the heterogeneity might be explained by differences in imaging modality, segmentation, deep learning and cross-validation., Conclusion: We found remarkable diagnosis potential in correctly distinguishing vertebral compression fractures in complex clinical contexts. However, the published radiomics models still have a great heterogeneity, and more large-scale clinical trials are essential to validate their generalizability., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024. Published by Elsevier B.V.)
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- 2024
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48. Diagnostic accuracy of CT-based radiomics and deep learning for predicting lymph node metastasis in esophageal cancer.
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Jannatdoust P, Valizadeh P, Pahlevan-Fallahy MT, Hassankhani A, Amoukhteh M, Behrouzieh S, Ghadimi DJ, Bilgin C, and Gholamrezanezhad A
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- Humans, Lymph Nodes diagnostic imaging, Lymph Nodes pathology, Predictive Value of Tests, Sensitivity and Specificity, Tomography, X-Ray Computed methods, Deep Learning, Esophageal Neoplasms diagnostic imaging, Esophageal Neoplasms pathology, Lymphatic Metastasis diagnostic imaging, Radiomics
- Abstract
Background: Esophageal cancer remains a global challenge due to late diagnoses and limited treatments. Lymph node metastasis (LNM) is crucial for prognosis, yet traditional diagnostics fall short. Integrating radiomics and deep learning (DL) with CT imaging for LNM diagnosis could revolutionize prognostic assessment and treatment planning., Methods: A systematic review and meta-analysis were conducted by searching PubMed, Scopus, Web of Science, and Embase up to October 1, 2023. The focus was on studies developing CT-based radiomics and/or DL models for preoperative LNM detection in esophageal cancer. Methodological quality was assessed using the METhodological RadiomICs Score (METRICS)., Results: Twelve studies were reviewed, and seven were included in the meta-analysis, most showing excellent methodological quality. Training sets revealed a pooled AUC of 87 % (95 % CI: 78 %-90 %), and internal validation sets showed an AUC of 85 % (95 % CI: 76 %-89 %), with no significant difference (p = 0.39). Sensitivity and specificity for training sets were 78.7 % and 81.8 %, respectively, with validation sets at 81.2 % and 76.2 %. DL models in training sets showed better diagnostic accuracy than radiomics (p = 0.054), significant after removing outliers (p < 0.01). Incorporating clinical data improved sensitivity in validation sets (p = 0.029). No significant difference was found between models based on CE or non-CE imaging (p = 0.281) or arterial or venous phase imaging (p = 0.927)., Conclusion: Integrating CT-based radiomics and DL improves LNM detection in esophageal cancer. Including clinical data could enhance model performance. Future research should focus on multicenter studies with independent validations to confirm these findings and promote broader clinical adoption., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
- Full Text
- View/download PDF
49. Development and validation of a radiomics-based model for predicting osteoporosis in patients with lumbar compression fractures.
- Author
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Nian S, Zhao Y, Li C, Zhu K, Li N, Li W, and Chen J
- Subjects
- Aged, Aged, 80 and over, Female, Humans, Male, Middle Aged, Machine Learning, Retrospective Studies, Fractures, Compression diagnostic imaging, Fractures, Compression etiology, Lumbar Vertebrae diagnostic imaging, Lumbar Vertebrae injuries, Magnetic Resonance Imaging, Osteoporosis diagnostic imaging, Osteoporosis complications, Osteoporotic Fractures diagnostic imaging, Radiomics, Spinal Fractures diagnostic imaging, Spinal Fractures etiology
- Abstract
Background: Osteoporosis, a metabolic bone disorder, markedly elevates fracture risks, with vertebral compression fractures being predominant. Antiosteoporotic treatments for patients with osteoporotic vertebral compression fractures (OVCF) lessen both the occurrence of subsequent fractures and associated pain. Thus, diagnosing osteoporosis in OVCF patients is vital., Purpose: The aim of this study was to develop a predictive radiographic model using T1 sequence MRI images to accurately determine whether patients with lumbar spine compression fractures also have osteoporosis., Study Design: Retrospective cohort study., Patient Sample: Patients over 45 years of age diagnosed with a fresh lumbar compression fracture., Outcome Measures: Diagnostic accuracy of the model (area under the ROC curve)., Methods: The study retrospectively collected clinical and imaging data (MRI and DEXA) from hospitalized lumbar compression fracture patients (L1-L4) aged 45 years or older between January 2021 and June 2023. Using the pyradiomics package in Python, features from the lumbar compression fracture vertebral region of interest (ROI) were extracted. Downscaling of the extracted features was performed using the Mann-Whitney U test and the least absolute shrinkage selection operator (LASSO) algorithm. Subsequently, six machine learning models (Naive Bayes, Support Vector Machine [SVM], Decision Tree, Random Forest, Extreme Gradient Boosting [XGBoost], and Light Gradient Boosting Machine [LightGBM]) were employed to train and validate these features in predicting osteoporosis comorbidity in OVCF patients., Results: A total of 128 participants, 79 in the osteoporotic group and 49 in the nonosteoporotic group, met the study's inclusion and exclusion criteria. From the T1 sequence MRI images, 1906 imaging features were extracted in both groups. Utilizing the Mann-Whitney U test, 365 radiologic features were selected out of the initial 1,906. Ultimately, the lasso algorithm identified 14 significant radiological features. These features, incorporated into six conventional machine learning algorithms, demonstrated successful prediction of osteoporosis in the validation set. The NaiveBayes model yielded an area under the receiver operating characteristic curve (AUC) of 0.84, sensitivity of 0.87, specificity of 0.70, and accuracy of 0.81., Conclusions: A NaiveBayes machine learning algorithm can predict osteoporosis in OVCF patients using t1-sequence MRI images of lumbar compression fractures. This approach aims to obviate the necessity for further osteoporosis assessments, diminish patient exposure to radiation, and bolster the clinical care of patients with OVCF., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
- Full Text
- View/download PDF
50. MRI-based radiomics signatures for preoperative prediction of Ki-67 index in primary central nervous system lymphoma.
- Author
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Liu J, Tu J, Xu L, Liu F, Lu Y, He F, Li A, Li Y, Liu S, and Xiong J
- Subjects
- Humans, Magnetic Resonance Imaging methods, Nomograms, Predictive Value of Tests, Retrospective Studies, Central Nervous System Neoplasms diagnostic imaging, Central Nervous System Neoplasms metabolism, Ki-67 Antigen metabolism, Lymphoma diagnostic imaging, Lymphoma metabolism, Radiomics
- Abstract
Purpose: The aim of this study was to develop and validate radiomics signatures based on MRI for preoperative prediction of Ki-67 proliferative index (PI) expression in primary central nervous system lymphoma (PCNSL)., Methods: A total of 341 patients with PCNSL were retrospectively analyzed, including 286 patients in one center as the training set and 55 patients in another two centers as the external validation set. Radiomics features were extracted and selected from preoperative contrast-enhanced T1-weighted images, fluid attenuation inversion recovery to build radiomics signatures according to the Ki-67 PI. The predictive performances of the radiomics model were evaluated using four classifiers including random forest, K-Nearest Neighbors, Neural Network and Decision Tree. A combined model was built by incorporating radiomics signature, clinical variables and MRI radiological characteristics using multivariate logistic regression analysis, and a nomogram was established to predict the expression of Ki-67 individually. The predictive performances of the models were evaluated using area under receiver operating characteristic curve (AUC) and decision curve analysis (DCA)., Results: Radiomics signatures were independent predictors of the expression level of Ki-67 (OR: 2.523, P < 0.001). RF radiomics models had the highest accuracy (0.934 in the training set and 0.811 in the external validation set) and F1 Score (0.920 in the training set and 0.836 in the external validation set). The clinic-radiologic-radiomics nomogram showed better predictive performance with AUCs of 0.877(95 % CI: 0.837-0.918) in the training set and 0.866(95 % CI: 0.774-0.957) in the external validation set. The calibration curve and DCA demonstrated goodness-of-fit and improved benefits in clinical practice of the nomogram., Conclusions: Nomograms integrating MRI-based radiomics and clinical-radiological characteristics could effectively predict Ki-67 PI in primary PCNSL., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
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