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Free-living (FLC) and particle-associated (PAC) bacterial communities contribute differentially to the cycling of matter in the environment. In this work we have for the first time studied the taxonomic composition and diversity of FLC and PAC in the oligotrophic freshwater Lake Baikal during the under-ice plankton peak. The communities on the bottom ice surface and in the water column under the ice were studied. Analysis by light microscopy showed that the bottom surface of the ice was dominated by green algae Chlorella spp. A complex of microalgae developed in the water column: green algae Monoraphidium griffithii , Monoraphidium contortum , Chlorella spp. , chrysophyte Dinobryon cylindricum , haptophyte Chrysochromulina parva , and diatom Synedra acus. Algal abundance on the ice sub-surface was several orders of magnitude higher than that in the water column. According to pyrosequencing data of the bacterial 16S rRNA V3-V4 region, diversity of FLC (as measured by Shannon, Simpson, Chao1 and ACE indices) was higher than that of PAC. Proteobacteria (Burkholderiaceae) dominated the FLC associated with ice; FLC of the water column under ice were dominated by Actinobacteria (Sporichthyaceae and Ilumatobacteraceae) and Verrucomicrobia (Methylacidiphilaceae). PAC associated with ice were dominated by Bacteroidetes (Flavobacteriaceae), while water column-associated PAC were dominated by Verrucomicrobia (FukuN18_freshwater_group, Methylacidiphilaceae) and cyanobacteria (Cyanobiaceae). The difference between free-living and particle-associated, as well as between water column and ice sub-surface bacterial communities, were explored on operational taxonomic unit (OTU) and phylotype levels. [ABSTRACT FROM AUTHOR]

The composition of bacterial communities in Lake Baikal in different hydrological periods and at different depths (down to 1515 m) has been analyzed using pyrosequencing of the 16S rRNA gene V3 variable region. Most of the resulting 34 562 reads of the Bacteria domain have clustered into 1693 operational taxonomic units (OTUs) classified with the phyla Proteobacteria, Actinobacteria, Chloroflexi, Bacteroidetes, Firmicutes, Acidobacteria and Cyanobacteria. It has been found that their composition at the family level and relative contributions to bacterial communities distributed over the water column vary depending on hydrological period. The number of OTUs and the parameters of taxonomic richness (ACE, Chao1 indices) and diversity (Shannon and inverse Simpson index) reach the highest values in water layers. The composition of bacterial communities in these layers remains relatively constant, whereas that in surface layers differs between hydrological seasons. The dynamics of physicochemical conditions over the water column and their relative constancy in deep layers are decisive factors in shaping the pattern of bacterial communities in Lake Baikal. [ABSTRACT FROM AUTHOR]