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Stripe (yellow) rust, caused by fungal pathogen Puccinia striiformis f. sp. tritici (Pst), is a serious disease of wheat in the United States and many other countries. Growing resistant cultivars has been approved to be the best approach for control of stripe rust. To determine stripe rust resistance genes in U.S. winter wheat cultivars and breeding lines, we analyzed a winter wheat panel of 857 cultivars and breeding lines in a genome-wide association study (GWAS) using genotyping by multiplexed sequencing (GMS) and by genotyping with molecular markers of 18 important stripe rust resistance genes or quantitative trait loci (QTL). The accessions were phenotyped for stripe rust response at adult-plant stage under natural infection in Pullman and Mount Vernon, Washington in 2018 and 2019, and in the seedling stage with six predominant or most virulent races of Pst. A total of 51 loci were identified to be related to stripe rust resistance, and at least 10 of them (QYrww.wgp.1D-3 , QYrww.wgp.2B-2 , QYrww.wgp.2B-3 , QYrww.wgp.2B-4 , QYrww.wgp.3A , QYrww.wgp.5A , QYrww.wgp.5B , QYrww.wgp.5D , QYrww.wgp.6A-2 and QYrww.wgp.7B-3) were previously reported. These genes or QTL were found to be present at different frequencies in breeding lines and cultivars developed by breeding programs in various winter wheat growing regions. Both Yr5 and Yr15 , which are highly resistant to all races identified thus far in the U.S., as well as Yr46 providing resistance to many races, were found absent in the breeding lines and commercially grown cultivars. The identified genes or QTL and their markers are useful in breeding programs to improve the level and durability of resistance to stripe rust. [ABSTRACT FROM AUTHOR]

Stripe rust caused by Puccinia striiformis f. sp. tritici (Pst) is one the most important diseases of wheat in Ethiopia and worldwide. To identify resistance genes, 90 bread wheat lines and 10 cultivars were tested at the seedling stage against one Pst race from Ethiopia and six races from China as well as evaluated for the stripe rust response in an inoculated field nursery at Yangling, Shaanxi province and in a naturally infected field in Jiangyou, Sichuan, China. Resistance genes were postulated using molecular assays for Yr9, Yr17, Yr18, Yr26, Yr29, Yr36, Yr44 and Yr62. Of the 100 entries tested, 16 had all stage resistance to all races. Molecular markers were positive for Yr9 in five genotypes, Yr17 in 21 genotypes, Yr18 in 27 genotypes, Yr26 in ten genotypes, Yr29 in 22 genotypes, Yr36 in 12 genotypes, Yr44 in 30 genotypes, and Yr62 in 51 genotypes. No line had Yr5, Yr8, Yr10 or Yr15. Complete or all stage resistance was observed in genotypes carrying gene combinations Yr9 + Yr18 + Yr44 + Yr62, Yr29 + Yr62 + Yr26 and Yr9 + Yr17 + Yr26 + Yr44 + Yr62. The results are helpful for developing wheat cultivars with effective and more durable resistance to stripe rust both in China and Ethiopia. [ABSTRACT FROM AUTHOR]

Stripe rust, caused by Puccinia striiformis f. sp. tritici , is one of the most damaging diseases of wheat in the world. China is one of the most important regions of wheat production and stripe rust epidemics. The spread of Yr26 -virulent races V26 has threatened wheat production in China. It is urgent to identify new resistance sources for use in breeding programs. A total of 60 accessions from different wheat regions in the world, showing excellent field resistance in previous study were examined in more details at Yangling under artificially inoculation conditions and Tianshui under naturally infection from 2015 to 2017. Seedling tests were also conducted using two Yr26 -virulent races and eight Yr26 -avirulent races. The combined field and seedling response data and pedigrees of the 60 entries were used to postulate the resistance genes involved. Molecular markers that are linked to some previously reported stripe rust resistance genes were used to validate the postulated genes. Resistance genes in 4 accessions that were resistant in all race tests in the seedling stage and field tests could not be predicted. These 4 accessions with all stage resistance should combine with other Yr genes to obtain durable resistance. Resistance in 24 accessions was attributed, at least in part, to combinations of known genes. Fifty accessions were susceptible to the Yr26 -virulent races in the seedling stage, but resistant in the fields of both locations. With at least partial assurance, the genes for effective resistance in the 50 accessions are different from those already widely used in Chinese wheat varieties. Therefore, these 50 accessions should be used in breeding programs to developing new cultivars with effective resistance to the new emerging races and other predominant races. • Resistance genes in 4 accessions that were resistant in all Pst race tests in the seedling stage and field tests could not be predicted. • Resistance in 24 accessions was attributed, at least in part, to combinations of known genes. • Resistance genes in the 50 accessions with adult plant resistance are different from those already widely used in Chinese wheat varieties. [ABSTRACT FROM AUTHOR]

Key message: Two adult plant stripe rust resistance QTL, QYrto.swust-3AS and QYrto.swust-3BS, were identified and mapped in common wheat cultivar Toni. The two QTL were located to corresponding positions in the wheat physical map position based on flanking SNP markers. Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most important foliar diseases of wheat. Characterization and utilization of resistance genes are the most effective, economic and environmental-friendly way to control the disease. The wheat cultivar Toni resistant at the adult plant stage to predominant Chinese Pst races was crossed with the susceptible genotype Mingxian 169. A recombinant inbred line population comprising 171 lines was tested in the field at three locations in the 2016 and 2017 crop seasons. The Affymetrix Axiom® 35 K single-nucleotide polymorphism (SNP) Wheat Breeder's Genotyping Array was used to map quantitative trait loci (QTL) for adult plant resistance to stripe rust. Inclusive composite interval mapping identified stable QTL QYrto.swust-3AS and QYrto.swust-3BS that explained 31.6–48.2% and 21.9–56.3% of the variation in stripe rust severity and infection type, respectively. The two QTL regions were anchored to the wheat IWGSC Ref Seq v1.0 sequence. QYrto.swust-3AS was localized to a 2.22-Mb interval flanked by SNP markers AX-95240191 and AX-94828890. Among 65 HC (high confidence) annotated genes in this region, 11 (16.9%) contained NB-ARC domains and 9 (13.8%) contained protein kinase domains and thus could contribute to disease resistance. QYrto.swust-3BS was localized to a 4.77-Mb interval flanked by SNP markers AX-94509749 and AX-94998050. One hundred and thirty three HC genes are annotated in this region. Among them, 14 (10.5%) protein kinase domain genes may contribute to disease resistance. The linked markers should be useful for marker-assisted selection in breeding for resistance. [ABSTRACT FROM AUTHOR]

Key message: Co-localization of a major QTL for wheat stripe rust resistance to a 3.9-cM interval on chromosome 6BL across both populations and another QTL on chromosome 2B with epistatic interaction. Cultivars with diverse resistance are the optimal strategy to minimize yield losses caused by wheat stripe rust (Puccinia striiformis f. sp. tritici). Two wheat populations involving resistant wheat lines P10078 and Snb"S" from CIMMYT were evaluated for stripe rust response in multiple environments. Pool analysis by Wheat660K SNP array showed that the overlapping interval on chromosome 6B likely harbored a major QTL between two populations. Then, linkage maps were constructed using KASP markers, and a co-localized locus with large effect on chromosome 6BL was detected using QTL analysis in both populations. The coincident QTL, named QYr.nwafu-6BL.2, explained 59.7% of the phenotypic maximum variation in the Mingxian 169 × P10078 and 52.5% in the Zhengmai 9023 × Snb"S" populations, respectively. This co-localization interval spanning 3.9 cM corresponds to ~ 30.5-Mb genomic region of the newest common wheat reference genome (IWGSC RefSeq v.1.0). In addition, another QTL was also detected on chromosome 2B in Zhengmai 9023 × Snb"S" population and it can accelerate expression of QYr.nwafu-6BL.2 to enhance resistance with epistatic interaction. Allowing for Pst response, marker genotypes, pedigree analysis and relative genetic distance, QYr.nwafu-6BL.2 is likely to be a distinct adult plant resistance QTL. Haplotype analysis of QYr.nwafu-6BL.2 revealed specific SNPs or alleles in the target region from a diversity panel of 176 unrelated wheat accessions. This QTL region provides opportunity for further map-based cloning, and haplotypes analysis enables pyramiding favorable alleles into commercial cultivars by marker-assisted selection. [ABSTRACT FROM AUTHOR]

Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most serious diseases of wheat; therefore, exploring effective resistance-related genes is critical for breeding and studying resistance mechanisms. However, only a few stripe rust resistance genes and defence-related genes have been cloned. Moreover, transgenic wheat with enhanced stripe rust resistance has rarely been reported. Receptor-like proteins (RLPs) are known to be involved in defence and developmental pathways. In this research, a novel RLP gene TaRLP1.1 was characterized as an important stripe rust defence gene. TaRLP1.1 was screened by GeneChip and was found to be induced by Pst specifically in the resistant variety. Knock down of TaRLP1.1 in the stripe rust-resistant plants resulted in increased susceptibility to Pst, and phenolic autofluorogen accumulation at the pathogen–host interaction sites, usually correlated with the hypersensitive response, was decreased dramatically. However, when the TaRLP1.1 gene was transformed into the susceptible wheat variety Yangmai158, the transgenic plants showed highly increased resistance to Pst, and the hypersensitive response was enhanced at the infection sites. Meanwhile, the expression of pathogenesis-related genes decreased in the TaRLP1.1-silenced plants and increased in the TaRLP1.1-overexpressing plants. Thus, it was proposed that TaRLP1.1 greatly contributed to the hypersensitive response during the pathogen–host interaction. Along with the functional analysis, an evolutionary study of the TaRLP1 family was performed. Characterization of TaRLP1.1 may facilitate breeding for stripe rust resistance and better understanding of the evolution of the RLP genes in wheat. [ABSTRACT FROM AUTHOR]

The Yr26 gene, conferring resistance to all currently important races of Puccinia striiformis f. sp. tritici (Pst) in China, was previously mapped to wheat chromosome deletion bin C-1BL-6-0.32 with low-density markers. In this study, collinearity of wheat to Brachypodium distachyon and rice was used to develop markers to saturate the chromosomal region containing the Yr26 locus, and a total of 2,341 F2 plants and 551 F2∶3 progenies derived from Avocet S×92R137 were used to develop a fine map of Yr26. Wheat expressed sequence tags (ESTs) located in deletion bin C-1BL-6-0.32 were used to develop sequence tagged site (STS) markers. The EST-STS markers flanking Yr26 were used to identify collinear regions of the rice and B. distachyon genomes. Wheat ESTs with significant similarities in the two collinear regions were selected to develop conserved markers for fine mapping of Yr26. Thirty-one markers were mapped to the Yr26 region, and six of them cosegregated with the resistance gene. Marker orders were highly conserved between rice and B. distachyon, but some rearrangements were observed between rice and wheat. Two flanking markers (CON-4 and CON-12) further narrowed the genomic region containing Yr26 to a 1.92 Mb region in B. distachyon chromosome 3 and a 1.17 Mb region in rice chromosome 10, and two putative resistance gene analogs were identified in the collinear region of B. distachyon. The markers developed in this study provide a potential target site for further map-based cloning of Yr26 and should be useful in marker assisted selection for pyramiding the gene with other resistance genes. [ABSTRACT FROM AUTHOR]