1. Kinetics and thermodynamics of RRF, EF-G, and thiostrepton interaction on the Escherichia coli ribosome.
- Author
-
Seo HS, Kiel M, Pan D, Raj VS, Kaji A, and Cooperman BS
- Subjects
- Coumarins, Kinetics, Nucleotides chemistry, Nucleotides metabolism, Peptide Elongation Factor G chemistry, Protein Binding drug effects, Ribosomal Proteins, Ribosomes chemistry, Spectrometry, Fluorescence, Thermodynamics, Escherichia coli metabolism, Peptide Elongation Factor G metabolism, Proteins chemistry, Proteins metabolism, Ribosomes metabolism, Thiostrepton pharmacology
- Abstract
Ribosome recycling factor (RRF) and elongation factor-G (EF-G) are jointly essential for recycling bacterial ribosomes following termination of protein synthesis. Here we present equilibrium and rapid kinetic measurements permitting formulation of a minimal kinetic scheme that accounts quantitatively for RRF and EF-G interaction on the Escherichia coli ribosome. RRF and EF-G (a) each form a binary complex on binding to a bare ribosome which undergoes isomerization to a more stable complex, (b) form mixed ternary complexes on the ribosome in which the affinity for each factor is considerably lower than its affinity for binding to a bare ribosome, and (c) each bind to two sites per ribosome, with EF-G having considerably higher second-site affinity than RRF. Addition of EF-G to the ribosome-RRF complex induces rapid RRF dissociation, at a rate compatible with the rate of ribosome recycling in vivo, but added RRF does not increase the lability of ribosome-bound EF-G. Added thiostrepton slows the initial binding of EF-G, and prevents both formation of the more stable EF-G complex and EF-G-induced RRF dissociation. These findings are relevant for the mechanism of post-termination complex disassembly.
- Published
- 2004
- Full Text
- View/download PDF